Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12864:12873
Extra
PDB:
ATOM 1 O3' U A2863 22.309 26.779 -9.931 1.00 59.51 O
ATOM 2 P G A2864 21.822 25.445 -10.663 1.00 54.66 P
ATOM 3 OP1 G A2864 22.120 25.560 -12.089 1.00 55.33 O
ATOM 4 OP2 G A2864 20.420 25.198 -10.232 1.00 54.63 O
ATOM 5 O5' G A2864 22.756 24.355 -10.005 1.00 53.98 O
ATOM 6 C5' G A2864 24.162 24.413 -10.097 1.00 53.82 C
ATOM 7 C4' G A2864 24.764 23.271 -9.357 1.00 53.16 C
ATOM 8 O4' G A2864 24.400 23.349 -7.956 1.00 52.57 O
ATOM 9 C3' G A2864 24.262 21.917 -9.772 1.00 53.19 C
ATOM 10 O3' G A2864 24.815 21.482 -11.009 1.00 53.63 O
ATOM 11 C2' G A2864 24.585 21.045 -8.548 1.00 52.42 C
ATOM 12 O2' G A2864 25.937 20.623 -8.533 1.00 52.14 O
ATOM 13 C1' G A2864 24.361 22.047 -7.398 1.00 52.08 C
ATOM 14 N9 G A2864 23.041 21.851 -6.793 1.00 51.97 N
ATOM 15 C8 G A2864 21.922 22.531 -7.198 1.00 52.45 C
ATOM 16 N7 G A2864 20.858 22.139 -6.576 1.00 52.27 N
ATOM 17 C5 G A2864 21.296 21.120 -5.765 1.00 51.65 C
ATOM 18 C6 G A2864 20.558 20.339 -4.879 1.00 51.23 C
ATOM 19 O6 G A2864 19.350 20.475 -4.684 1.00 51.37 O
ATOM 20 N1 G A2864 21.334 19.398 -4.165 1.00 50.63 N
ATOM 21 C2 G A2864 22.697 19.254 -4.322 1.00 50.47 C
ATOM 22 N2 G A2864 23.288 18.305 -3.584 1.00 49.90 N
ATOM 23 N3 G A2864 23.398 20.012 -5.172 1.00 50.87 N
ATOM 24 C4 G A2864 22.640 20.913 -5.858 1.00 51.44 C
ATOM 25 P A A2865 23.948 20.563 -11.994 1.00 58.36 P
ATOM 26 OP1 A A2865 24.589 20.583 -13.319 1.00 58.92 O
ATOM 27 OP2 A A2865 22.573 20.999 -11.876 1.00 58.58 O
ATOM 28 O5' A A2865 24.091 19.134 -11.314 1.00 57.77 O
TER
ATOM 1 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 2 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 3 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 4 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 5 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
ATOM 6 C5' U B2873 22.676 16.542 0.456 1.00 51.23 C
ATOM 7 C4' U B2873 24.076 16.883 0.939 1.00 50.88 C
ATOM 8 O4' U B2873 24.729 17.662 -0.082 1.00 51.32 O
ATOM 9 C3' U B2873 24.139 17.736 2.209 1.00 50.48 C
ATOM 10 O3' U B2873 25.384 17.546 2.897 1.00 50.00 O
ATOM 11 C2' U B2873 24.159 19.129 1.618 1.00 50.93 C
ATOM 12 O2' U B2873 24.642 20.122 2.482 1.00 50.67 O
ATOM 13 C1' U B2873 25.095 18.903 0.456 1.00 51.24 C
ATOM 14 N1 U B2873 25.009 19.911 -0.587 1.00 51.85 N
ATOM 15 C2 U B2873 26.224 20.269 -1.118 1.00 51.96 C
ATOM 16 O2 U B2873 27.283 19.766 -0.760 1.00 51.59 O
ATOM 17 N3 U B2873 26.135 21.230 -2.074 1.00 52.55 N
ATOM 18 C4 U B2873 25.013 21.859 -2.506 1.00 53.00 C
ATOM 19 O4 U B2873 25.150 22.718 -3.354 1.00 53.50 O
ATOM 20 C5 U B2873 23.782 21.449 -1.909 1.00 52.85 C
ATOM 21 C6 U B2873 23.828 20.506 -0.958 1.00 52.27 C
ATOM 22 P A B2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 23 OP1 A B2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 24 OP2 A B2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 25 O5' A B2874 26.891 15.766 1.987 1.00 51.91 O
TER
ATOM 2 P G A2864 21.822 25.445 -10.663 1.00 54.66 P
ATOM 3 OP1 G A2864 22.120 25.560 -12.089 1.00 55.33 O
ATOM 4 OP2 G A2864 20.420 25.198 -10.232 1.00 54.63 O
ATOM 5 O5' G A2864 22.756 24.355 -10.005 1.00 53.98 O
ATOM 6 C5' G A2864 24.162 24.413 -10.097 1.00 53.82 C
ATOM 7 C4' G A2864 24.764 23.271 -9.357 1.00 53.16 C
ATOM 8 O4' G A2864 24.400 23.349 -7.956 1.00 52.57 O
ATOM 9 C3' G A2864 24.262 21.917 -9.772 1.00 53.19 C
ATOM 10 O3' G A2864 24.815 21.482 -11.009 1.00 53.63 O
ATOM 11 C2' G A2864 24.585 21.045 -8.548 1.00 52.42 C
ATOM 12 O2' G A2864 25.937 20.623 -8.533 1.00 52.14 O
ATOM 13 C1' G A2864 24.361 22.047 -7.398 1.00 52.08 C
ATOM 14 N9 G A2864 23.041 21.851 -6.793 1.00 51.97 N
ATOM 15 C8 G A2864 21.922 22.531 -7.198 1.00 52.45 C
ATOM 16 N7 G A2864 20.858 22.139 -6.576 1.00 52.27 N
ATOM 17 C5 G A2864 21.296 21.120 -5.765 1.00 51.65 C
ATOM 18 C6 G A2864 20.558 20.339 -4.879 1.00 51.23 C
ATOM 19 O6 G A2864 19.350 20.475 -4.684 1.00 51.37 O
ATOM 20 N1 G A2864 21.334 19.398 -4.165 1.00 50.63 N
ATOM 21 C2 G A2864 22.697 19.254 -4.322 1.00 50.47 C
ATOM 22 N2 G A2864 23.288 18.305 -3.584 1.00 49.90 N
ATOM 23 N3 G A2864 23.398 20.012 -5.172 1.00 50.87 N
ATOM 24 C4 G A2864 22.640 20.913 -5.858 1.00 51.44 C
ATOM 25 P A A2865 23.948 20.563 -11.994 1.00 58.36 P
ATOM 26 OP1 A A2865 24.589 20.583 -13.319 1.00 58.92 O
ATOM 27 OP2 A A2865 22.573 20.999 -11.876 1.00 58.58 O
ATOM 28 O5' A A2865 24.091 19.134 -11.314 1.00 57.77 O
TER
ATOM 1 O3' C B2872 20.779 19.566 -0.733 1.00 54.65 O
ATOM 2 P U B2873 20.732 17.958 -0.612 1.00 52.19 P
ATOM 3 OP1 U B2873 21.225 17.420 -1.896 1.00 52.58 O
ATOM 4 OP2 U B2873 19.388 17.582 -0.159 1.00 52.16 O
ATOM 5 O5' U B2873 21.791 17.661 0.532 1.00 51.50 O
ATOM 6 C5' U B2873 22.676 16.542 0.456 1.00 51.23 C
ATOM 7 C4' U B2873 24.076 16.883 0.939 1.00 50.88 C
ATOM 8 O4' U B2873 24.729 17.662 -0.082 1.00 51.32 O
ATOM 9 C3' U B2873 24.139 17.736 2.209 1.00 50.48 C
ATOM 10 O3' U B2873 25.384 17.546 2.897 1.00 50.00 O
ATOM 11 C2' U B2873 24.159 19.129 1.618 1.00 50.93 C
ATOM 12 O2' U B2873 24.642 20.122 2.482 1.00 50.67 O
ATOM 13 C1' U B2873 25.095 18.903 0.456 1.00 51.24 C
ATOM 14 N1 U B2873 25.009 19.911 -0.587 1.00 51.85 N
ATOM 15 C2 U B2873 26.224 20.269 -1.118 1.00 51.96 C
ATOM 16 O2 U B2873 27.283 19.766 -0.760 1.00 51.59 O
ATOM 17 N3 U B2873 26.135 21.230 -2.074 1.00 52.55 N
ATOM 18 C4 U B2873 25.013 21.859 -2.506 1.00 53.00 C
ATOM 19 O4 U B2873 25.150 22.718 -3.354 1.00 53.50 O
ATOM 20 C5 U B2873 23.782 21.449 -1.909 1.00 52.85 C
ATOM 21 C6 U B2873 23.828 20.506 -0.958 1.00 52.27 C
ATOM 22 P A B2874 26.010 16.096 3.258 1.00 51.56 P
ATOM 23 OP1 A B2874 24.919 15.126 3.366 1.00 51.53 O
ATOM 24 OP2 A B2874 26.888 16.312 4.432 1.00 51.01 O
ATOM 25 O5' A B2874 26.891 15.766 1.987 1.00 51.91 O
TER
Atoms:
OP1: (22.120,25.560,-12.089)
OP2: (20.420,25.198,-10.232)
C3': (24.262,21.917,-9.772)
C1': (24.361,22.047,-7.398)
C5': (24.162,24.413,-10.097)
O6: (19.350,20.475,-4.684)
O4': (24.400,23.349,-7.956)
C8: (21.922,22.531,-7.198)
C2: (22.697,19.254,-4.322)
C6: (20.558,20.339,-4.879)
C5: (21.296,21.120,-5.765)
C4: (22.640,20.913,-5.858)
P: (21.822,25.445,-10.663)
C4': (24.764,23.271,-9.357)
C2': (24.585,21.045,-8.548)
O2': (25.937,20.623,-8.533)
N1: (21.334,19.398,-4.165)
N2: (23.288,18.305,-3.584)
N3: (23.398,20.012,-5.172)
N7: (20.858,22.139,-6.576)
N9: (23.041,21.851,-6.793)
O5': (22.756,24.355,-10.005)
O3': (24.815,21.482,-11.009)
OP2: (20.420,25.198,-10.232)
C3': (24.262,21.917,-9.772)
C1': (24.361,22.047,-7.398)
C5': (24.162,24.413,-10.097)
O6: (19.350,20.475,-4.684)
O4': (24.400,23.349,-7.956)
C8: (21.922,22.531,-7.198)
C2: (22.697,19.254,-4.322)
C6: (20.558,20.339,-4.879)
C5: (21.296,21.120,-5.765)
C4: (22.640,20.913,-5.858)
P: (21.822,25.445,-10.663)
C4': (24.764,23.271,-9.357)
C2': (24.585,21.045,-8.548)
O2': (25.937,20.623,-8.533)
N1: (21.334,19.398,-4.165)
N2: (23.288,18.305,-3.584)
N3: (23.398,20.012,-5.172)
N7: (20.858,22.139,-6.576)
N9: (23.041,21.851,-6.793)
O5': (22.756,24.355,-10.005)
O3': (24.815,21.482,-11.009)
C4: (25.013,21.859,-2.506)
N3: (26.135,21.230,-2.074)
OP1: (21.225,17.420,-1.896)
OP2: (19.388,17.582,-0.159)
C2: (26.224,20.269,-1.118)
C1': (25.095,18.903,0.456)
C3': (24.139,17.736,2.209)
O5': (21.791,17.661,0.532)
O4': (24.729,17.662,-0.082)
C5': (22.676,16.542,0.456)
P: (20.732,17.958,-0.612)
C4': (24.076,16.883,0.939)
C2': (24.159,19.129,1.618)
O2': (24.642,20.122,2.482)
N1: (25.009,19.911,-0.587)
O4: (25.150,22.718,-3.354)
O2: (27.283,19.766,-0.760)
C6: (23.828,20.506,-0.958)
C5: (23.782,21.449,-1.909)
O3': (25.384,17.546,2.897)
N3: (26.135,21.230,-2.074)
OP1: (21.225,17.420,-1.896)
OP2: (19.388,17.582,-0.159)
C2: (26.224,20.269,-1.118)
C1': (25.095,18.903,0.456)
C3': (24.139,17.736,2.209)
O5': (21.791,17.661,0.532)
O4': (24.729,17.662,-0.082)
C5': (22.676,16.542,0.456)
P: (20.732,17.958,-0.612)
C4': (24.076,16.883,0.939)
C2': (24.159,19.129,1.618)
O2': (24.642,20.122,2.482)
N1: (25.009,19.911,-0.587)
O4: (25.150,22.718,-3.354)
O2: (27.283,19.766,-0.760)
C6: (23.828,20.506,-0.958)
C5: (23.782,21.449,-1.909)
O3': (25.384,17.546,2.897)
Image (generated by PyMOL):