Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1553:1538
Extra
PDB:
ATOM 1 O3' A A 552 98.916 -22.281 22.371 1.00 49.77 O
ATOM 2 P G A 553 98.470 -21.520 23.691 1.00 47.68 P
ATOM 3 OP1 G A 553 97.639 -22.439 24.430 1.00 47.43 O
ATOM 4 OP2 G A 553 97.925 -20.239 23.293 1.00 47.50 O
ATOM 5 O5' G A 553 99.803 -21.254 24.467 1.00 47.78 O
ATOM 6 C5' G A 553 100.254 -22.095 25.498 1.00 47.76 C
ATOM 7 C4' G A 553 99.314 -22.166 26.644 1.00 47.30 C
ATOM 8 O4' G A 553 99.219 -23.535 27.022 1.00 47.37 O
ATOM 9 C3' G A 553 99.738 -21.402 27.881 1.00 47.06 C
ATOM 10 O3' G A 553 99.144 -20.116 27.918 1.00 46.78 O
ATOM 11 C2' G A 553 99.351 -22.318 29.053 1.00 46.85 C
ATOM 12 O2' G A 553 98.116 -21.943 29.636 1.00 46.40 O
ATOM 13 C1' G A 553 99.196 -23.690 28.389 1.00 47.11 C
ATOM 14 N9 G A 553 100.260 -24.636 28.779 1.00 47.41 N
ATOM 15 C8 G A 553 100.076 -25.934 29.170 1.00 47.47 C
ATOM 16 N7 G A 553 101.152 -26.568 29.528 1.00 47.75 N
ATOM 17 C5 G A 553 102.121 -25.605 29.382 1.00 47.88 C
ATOM 18 C6 G A 553 103.498 -25.696 29.641 1.00 48.20 C
ATOM 19 O6 G A 553 104.124 -26.676 30.055 1.00 48.42 O
ATOM 20 N1 G A 553 104.167 -24.528 29.339 1.00 48.27 N
ATOM 21 C2 G A 553 103.557 -23.398 28.877 1.00 48.05 C
ATOM 22 N2 G A 553 104.392 -22.352 28.653 1.00 48.18 N
ATOM 23 N3 G A 553 102.266 -23.290 28.657 1.00 47.75 N
ATOM 24 C4 G A 553 101.609 -24.420 28.915 1.00 47.68 C
ATOM 25 P G A 554 99.702 -18.924 28.834 1.00 43.10 P
ATOM 26 OP1 G A 554 100.805 -18.281 28.099 1.00 43.45 O
ATOM 27 OP2 G A 554 99.941 -19.454 30.183 1.00 42.96 O
ATOM 28 O5' G A 554 98.480 -17.938 28.869 1.00 42.72 O
TER
ATOM 1 O3' C B 537 109.279 -23.924 30.033 1.00 50.83 O
ATOM 2 P U B 538 107.864 -24.243 29.392 1.00 62.06 P
ATOM 3 OP1 U B 538 107.999 -24.030 27.927 1.00 62.35 O
ATOM 4 OP2 U B 538 106.859 -23.461 30.158 1.00 61.55 O
ATOM 5 O5' U B 538 107.668 -25.778 29.699 1.00 62.16 O
ATOM 6 C5' U B 538 108.771 -26.654 29.729 1.00 62.59 C
ATOM 7 C4' U B 538 108.456 -27.894 30.496 1.00 62.56 C
ATOM 8 O4' U B 538 108.368 -27.571 31.902 1.00 62.24 O
ATOM 9 C3' U B 538 107.143 -28.571 30.118 1.00 62.37 C
ATOM 10 O3' U B 538 107.372 -29.934 29.782 1.00 62.72 O
ATOM 11 C2' U B 538 106.288 -28.476 31.384 1.00 61.89 C
ATOM 12 O2' U B 538 105.482 -29.600 31.632 1.00 61.81 O
ATOM 13 C1' U B 538 107.316 -28.290 32.480 1.00 61.96 C
ATOM 14 N1 U B 538 106.806 -27.530 33.592 1.00 61.52 N
ATOM 15 C2 U B 538 106.598 -28.123 34.808 1.00 61.36 C
ATOM 16 O2 U B 538 106.869 -29.284 35.035 1.00 61.58 O
ATOM 17 N3 U B 538 106.083 -27.312 35.787 1.00 60.95 N
ATOM 18 C4 U B 538 105.743 -25.983 35.643 1.00 60.68 C
ATOM 19 O4 U B 538 105.252 -25.344 36.582 1.00 60.32 O
ATOM 20 C5 U B 538 105.989 -25.462 34.329 1.00 60.87 C
ATOM 21 C6 U B 538 106.484 -26.238 33.364 1.00 61.27 C
ATOM 22 P G B 539 107.147 -30.417 28.260 1.00 58.63 P
ATOM 23 OP1 G B 539 107.460 -31.869 28.196 1.00 58.99 O
ATOM 24 OP2 G B 539 107.901 -29.465 27.361 1.00 58.86 O
ATOM 25 O5' G B 539 105.590 -30.226 28.087 1.00 58.21 O
TER
ATOM 2 P G A 553 98.470 -21.520 23.691 1.00 47.68 P
ATOM 3 OP1 G A 553 97.639 -22.439 24.430 1.00 47.43 O
ATOM 4 OP2 G A 553 97.925 -20.239 23.293 1.00 47.50 O
ATOM 5 O5' G A 553 99.803 -21.254 24.467 1.00 47.78 O
ATOM 6 C5' G A 553 100.254 -22.095 25.498 1.00 47.76 C
ATOM 7 C4' G A 553 99.314 -22.166 26.644 1.00 47.30 C
ATOM 8 O4' G A 553 99.219 -23.535 27.022 1.00 47.37 O
ATOM 9 C3' G A 553 99.738 -21.402 27.881 1.00 47.06 C
ATOM 10 O3' G A 553 99.144 -20.116 27.918 1.00 46.78 O
ATOM 11 C2' G A 553 99.351 -22.318 29.053 1.00 46.85 C
ATOM 12 O2' G A 553 98.116 -21.943 29.636 1.00 46.40 O
ATOM 13 C1' G A 553 99.196 -23.690 28.389 1.00 47.11 C
ATOM 14 N9 G A 553 100.260 -24.636 28.779 1.00 47.41 N
ATOM 15 C8 G A 553 100.076 -25.934 29.170 1.00 47.47 C
ATOM 16 N7 G A 553 101.152 -26.568 29.528 1.00 47.75 N
ATOM 17 C5 G A 553 102.121 -25.605 29.382 1.00 47.88 C
ATOM 18 C6 G A 553 103.498 -25.696 29.641 1.00 48.20 C
ATOM 19 O6 G A 553 104.124 -26.676 30.055 1.00 48.42 O
ATOM 20 N1 G A 553 104.167 -24.528 29.339 1.00 48.27 N
ATOM 21 C2 G A 553 103.557 -23.398 28.877 1.00 48.05 C
ATOM 22 N2 G A 553 104.392 -22.352 28.653 1.00 48.18 N
ATOM 23 N3 G A 553 102.266 -23.290 28.657 1.00 47.75 N
ATOM 24 C4 G A 553 101.609 -24.420 28.915 1.00 47.68 C
ATOM 25 P G A 554 99.702 -18.924 28.834 1.00 43.10 P
ATOM 26 OP1 G A 554 100.805 -18.281 28.099 1.00 43.45 O
ATOM 27 OP2 G A 554 99.941 -19.454 30.183 1.00 42.96 O
ATOM 28 O5' G A 554 98.480 -17.938 28.869 1.00 42.72 O
TER
ATOM 1 O3' C B 537 109.279 -23.924 30.033 1.00 50.83 O
ATOM 2 P U B 538 107.864 -24.243 29.392 1.00 62.06 P
ATOM 3 OP1 U B 538 107.999 -24.030 27.927 1.00 62.35 O
ATOM 4 OP2 U B 538 106.859 -23.461 30.158 1.00 61.55 O
ATOM 5 O5' U B 538 107.668 -25.778 29.699 1.00 62.16 O
ATOM 6 C5' U B 538 108.771 -26.654 29.729 1.00 62.59 C
ATOM 7 C4' U B 538 108.456 -27.894 30.496 1.00 62.56 C
ATOM 8 O4' U B 538 108.368 -27.571 31.902 1.00 62.24 O
ATOM 9 C3' U B 538 107.143 -28.571 30.118 1.00 62.37 C
ATOM 10 O3' U B 538 107.372 -29.934 29.782 1.00 62.72 O
ATOM 11 C2' U B 538 106.288 -28.476 31.384 1.00 61.89 C
ATOM 12 O2' U B 538 105.482 -29.600 31.632 1.00 61.81 O
ATOM 13 C1' U B 538 107.316 -28.290 32.480 1.00 61.96 C
ATOM 14 N1 U B 538 106.806 -27.530 33.592 1.00 61.52 N
ATOM 15 C2 U B 538 106.598 -28.123 34.808 1.00 61.36 C
ATOM 16 O2 U B 538 106.869 -29.284 35.035 1.00 61.58 O
ATOM 17 N3 U B 538 106.083 -27.312 35.787 1.00 60.95 N
ATOM 18 C4 U B 538 105.743 -25.983 35.643 1.00 60.68 C
ATOM 19 O4 U B 538 105.252 -25.344 36.582 1.00 60.32 O
ATOM 20 C5 U B 538 105.989 -25.462 34.329 1.00 60.87 C
ATOM 21 C6 U B 538 106.484 -26.238 33.364 1.00 61.27 C
ATOM 22 P G B 539 107.147 -30.417 28.260 1.00 58.63 P
ATOM 23 OP1 G B 539 107.460 -31.869 28.196 1.00 58.99 O
ATOM 24 OP2 G B 539 107.901 -29.465 27.361 1.00 58.86 O
ATOM 25 O5' G B 539 105.590 -30.226 28.087 1.00 58.21 O
TER
Atoms:
OP1: (97.639,-22.439,24.430)
OP2: (97.925,-20.239,23.293)
C3': (99.738,-21.402,27.881)
C1': (99.196,-23.690,28.389)
C5': (100.254,-22.095,25.498)
O6: (104.124,-26.676,30.055)
O4': (99.219,-23.535,27.022)
C8: (100.076,-25.934,29.170)
C2: (103.557,-23.398,28.877)
C6: (103.498,-25.696,29.641)
C5: (102.121,-25.605,29.382)
C4: (101.609,-24.420,28.915)
P: (98.470,-21.520,23.691)
C4': (99.314,-22.166,26.644)
C2': (99.351,-22.318,29.053)
O2': (98.116,-21.943,29.636)
N1: (104.167,-24.528,29.339)
N2: (104.392,-22.352,28.653)
N3: (102.266,-23.290,28.657)
N7: (101.152,-26.568,29.528)
N9: (100.260,-24.636,28.779)
O5': (99.803,-21.254,24.467)
O3': (99.144,-20.116,27.918)
OP2: (97.925,-20.239,23.293)
C3': (99.738,-21.402,27.881)
C1': (99.196,-23.690,28.389)
C5': (100.254,-22.095,25.498)
O6: (104.124,-26.676,30.055)
O4': (99.219,-23.535,27.022)
C8: (100.076,-25.934,29.170)
C2: (103.557,-23.398,28.877)
C6: (103.498,-25.696,29.641)
C5: (102.121,-25.605,29.382)
C4: (101.609,-24.420,28.915)
P: (98.470,-21.520,23.691)
C4': (99.314,-22.166,26.644)
C2': (99.351,-22.318,29.053)
O2': (98.116,-21.943,29.636)
N1: (104.167,-24.528,29.339)
N2: (104.392,-22.352,28.653)
N3: (102.266,-23.290,28.657)
N7: (101.152,-26.568,29.528)
N9: (100.260,-24.636,28.779)
O5': (99.803,-21.254,24.467)
O3': (99.144,-20.116,27.918)
C4: (105.743,-25.983,35.643)
N3: (106.083,-27.312,35.787)
OP1: (107.999,-24.030,27.927)
OP2: (106.859,-23.461,30.158)
C2: (106.598,-28.123,34.808)
C1': (107.316,-28.290,32.480)
C3': (107.143,-28.571,30.118)
O5': (107.668,-25.778,29.699)
O4': (108.368,-27.571,31.902)
C5': (108.771,-26.654,29.729)
P: (107.864,-24.243,29.392)
C4': (108.456,-27.894,30.496)
C2': (106.288,-28.476,31.384)
O2': (105.482,-29.600,31.632)
N1: (106.806,-27.530,33.592)
O4: (105.252,-25.344,36.582)
O2: (106.869,-29.284,35.035)
C6: (106.484,-26.238,33.364)
C5: (105.989,-25.462,34.329)
O3': (107.372,-29.934,29.782)
N3: (106.083,-27.312,35.787)
OP1: (107.999,-24.030,27.927)
OP2: (106.859,-23.461,30.158)
C2: (106.598,-28.123,34.808)
C1': (107.316,-28.290,32.480)
C3': (107.143,-28.571,30.118)
O5': (107.668,-25.778,29.699)
O4': (108.368,-27.571,31.902)
C5': (108.771,-26.654,29.729)
P: (107.864,-24.243,29.392)
C4': (108.456,-27.894,30.496)
C2': (106.288,-28.476,31.384)
O2': (105.482,-29.600,31.632)
N1: (106.806,-27.530,33.592)
O4: (105.252,-25.344,36.582)
O2: (106.869,-29.284,35.035)
C6: (106.484,-26.238,33.364)
C5: (105.989,-25.462,34.329)
O3': (107.372,-29.934,29.782)
Image (generated by PyMOL):