Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X62:X10
Extra
PDB:
ATOM 1 O3' U A 61 -18.057 -15.736 10.753 1.00 32.25 O
ATOM 2 P G A 62 -19.327 -16.286 9.955 1.00 31.76 P
ATOM 3 OP1 G A 62 -20.480 -15.470 10.397 1.00 32.26 O
ATOM 4 OP2 G A 62 -19.382 -17.759 10.068 1.00 32.19 O
ATOM 5 O5' G A 62 -18.979 -15.914 8.441 1.00 32.08 O
ATOM 6 C5' G A 62 -19.735 -16.459 7.372 1.00 31.66 C
ATOM 7 C4' G A 62 -19.638 -15.563 6.153 1.00 32.62 C
ATOM 8 O4' G A 62 -20.389 -14.339 6.371 1.00 32.88 O
ATOM 9 C3' G A 62 -18.241 -15.047 5.853 1.00 32.86 C
ATOM 10 O3' G A 62 -17.457 -16.024 5.195 1.00 33.89 O
ATOM 11 C2' G A 62 -18.575 -13.899 4.917 1.00 32.85 C
ATOM 12 O2' G A 62 -18.932 -14.367 3.629 1.00 32.65 O
ATOM 13 C1' G A 62 -19.771 -13.288 5.645 1.00 33.49 C
ATOM 14 N9 G A 62 -19.371 -12.205 6.545 1.00 34.78 N
ATOM 15 C8 G A 62 -19.107 -12.258 7.897 1.00 34.91 C
ATOM 16 N7 G A 62 -18.752 -11.104 8.403 1.00 35.64 N
ATOM 17 C5 G A 62 -18.786 -10.231 7.320 1.00 34.62 C
ATOM 18 C6 G A 62 -18.507 -8.842 7.236 1.00 34.69 C
ATOM 19 O6 G A 62 -18.157 -8.068 8.137 1.00 35.27 O
ATOM 20 N1 G A 62 -18.658 -8.356 5.937 1.00 34.38 N
ATOM 21 C2 G A 62 -19.033 -9.117 4.854 1.00 34.43 C
ATOM 22 N2 G A 62 -19.130 -8.490 3.673 1.00 35.22 N
ATOM 23 N3 G A 62 -19.305 -10.411 4.922 1.00 34.57 N
ATOM 24 C4 G A 62 -19.158 -10.899 6.176 1.00 34.10 C
ATOM 25 P C A 63 -15.886 -15.779 4.999 1.00 33.13 P
ATOM 26 OP1 C A 63 -15.294 -15.512 6.328 1.00 35.23 O
ATOM 27 OP2 C A 63 -15.688 -14.820 3.895 1.00 32.87 O
ATOM 28 O5' C A 63 -15.441 -17.229 4.507 1.00 33.27 O
TER
ATOM 1 O3' G B 9 -18.409 -5.648 2.944 1.00 31.78 O
ATOM 2 P U B 10 -18.045 -4.834 4.275 1.00 32.61 P
ATOM 3 OP1 U B 10 -18.561 -5.613 5.423 1.00 31.72 O
ATOM 4 OP2 U B 10 -18.420 -3.414 4.101 1.00 32.52 O
ATOM 5 O5' U B 10 -16.454 -4.897 4.286 1.00 32.18 O
ATOM 6 C5' U B 10 -15.788 -6.124 4.534 1.00 33.17 C
ATOM 7 C4' U B 10 -14.323 -5.938 4.207 1.00 32.98 C
ATOM 8 O4' U B 10 -14.208 -5.659 2.792 1.00 33.09 O
ATOM 9 C3' U B 10 -13.684 -4.720 4.854 1.00 33.97 C
ATOM 10 O3' U B 10 -13.291 -5.004 6.185 1.00 35.47 O
ATOM 11 C2' U B 10 -12.478 -4.507 3.944 1.00 33.10 C
ATOM 12 O2' U B 10 -11.386 -5.341 4.281 1.00 33.06 O
ATOM 13 C1' U B 10 -13.039 -4.893 2.575 1.00 32.97 C
ATOM 14 N1 U B 10 -13.339 -3.694 1.744 1.00 32.78 N
ATOM 15 C2 U B 10 -12.440 -3.360 0.754 1.00 32.64 C
ATOM 16 O2 U B 10 -11.452 -4.030 0.512 1.00 32.10 O
ATOM 17 N3 U B 10 -12.752 -2.228 0.046 1.00 31.47 N
ATOM 18 C4 U B 10 -13.848 -1.406 0.237 1.00 32.73 C
ATOM 19 O4 U B 10 -13.997 -0.421 -0.478 1.00 31.63 O
ATOM 20 C5 U B 10 -14.735 -1.812 1.300 1.00 32.62 C
ATOM 21 C6 U B 10 -14.451 -2.916 2.004 1.00 32.70 C
ATOM 22 P G B 11 -14.012 -4.286 7.420 1.00 38.23 P
ATOM 23 OP1 G B 11 -15.038 -3.347 6.910 1.00 37.68 O
ATOM 24 OP2 G B 11 -12.942 -3.799 8.316 1.00 38.02 O
ATOM 25 O5' G B 11 -14.758 -5.514 8.131 1.00 36.73 O
TER
ATOM 2 P G A 62 -19.327 -16.286 9.955 1.00 31.76 P
ATOM 3 OP1 G A 62 -20.480 -15.470 10.397 1.00 32.26 O
ATOM 4 OP2 G A 62 -19.382 -17.759 10.068 1.00 32.19 O
ATOM 5 O5' G A 62 -18.979 -15.914 8.441 1.00 32.08 O
ATOM 6 C5' G A 62 -19.735 -16.459 7.372 1.00 31.66 C
ATOM 7 C4' G A 62 -19.638 -15.563 6.153 1.00 32.62 C
ATOM 8 O4' G A 62 -20.389 -14.339 6.371 1.00 32.88 O
ATOM 9 C3' G A 62 -18.241 -15.047 5.853 1.00 32.86 C
ATOM 10 O3' G A 62 -17.457 -16.024 5.195 1.00 33.89 O
ATOM 11 C2' G A 62 -18.575 -13.899 4.917 1.00 32.85 C
ATOM 12 O2' G A 62 -18.932 -14.367 3.629 1.00 32.65 O
ATOM 13 C1' G A 62 -19.771 -13.288 5.645 1.00 33.49 C
ATOM 14 N9 G A 62 -19.371 -12.205 6.545 1.00 34.78 N
ATOM 15 C8 G A 62 -19.107 -12.258 7.897 1.00 34.91 C
ATOM 16 N7 G A 62 -18.752 -11.104 8.403 1.00 35.64 N
ATOM 17 C5 G A 62 -18.786 -10.231 7.320 1.00 34.62 C
ATOM 18 C6 G A 62 -18.507 -8.842 7.236 1.00 34.69 C
ATOM 19 O6 G A 62 -18.157 -8.068 8.137 1.00 35.27 O
ATOM 20 N1 G A 62 -18.658 -8.356 5.937 1.00 34.38 N
ATOM 21 C2 G A 62 -19.033 -9.117 4.854 1.00 34.43 C
ATOM 22 N2 G A 62 -19.130 -8.490 3.673 1.00 35.22 N
ATOM 23 N3 G A 62 -19.305 -10.411 4.922 1.00 34.57 N
ATOM 24 C4 G A 62 -19.158 -10.899 6.176 1.00 34.10 C
ATOM 25 P C A 63 -15.886 -15.779 4.999 1.00 33.13 P
ATOM 26 OP1 C A 63 -15.294 -15.512 6.328 1.00 35.23 O
ATOM 27 OP2 C A 63 -15.688 -14.820 3.895 1.00 32.87 O
ATOM 28 O5' C A 63 -15.441 -17.229 4.507 1.00 33.27 O
TER
ATOM 1 O3' G B 9 -18.409 -5.648 2.944 1.00 31.78 O
ATOM 2 P U B 10 -18.045 -4.834 4.275 1.00 32.61 P
ATOM 3 OP1 U B 10 -18.561 -5.613 5.423 1.00 31.72 O
ATOM 4 OP2 U B 10 -18.420 -3.414 4.101 1.00 32.52 O
ATOM 5 O5' U B 10 -16.454 -4.897 4.286 1.00 32.18 O
ATOM 6 C5' U B 10 -15.788 -6.124 4.534 1.00 33.17 C
ATOM 7 C4' U B 10 -14.323 -5.938 4.207 1.00 32.98 C
ATOM 8 O4' U B 10 -14.208 -5.659 2.792 1.00 33.09 O
ATOM 9 C3' U B 10 -13.684 -4.720 4.854 1.00 33.97 C
ATOM 10 O3' U B 10 -13.291 -5.004 6.185 1.00 35.47 O
ATOM 11 C2' U B 10 -12.478 -4.507 3.944 1.00 33.10 C
ATOM 12 O2' U B 10 -11.386 -5.341 4.281 1.00 33.06 O
ATOM 13 C1' U B 10 -13.039 -4.893 2.575 1.00 32.97 C
ATOM 14 N1 U B 10 -13.339 -3.694 1.744 1.00 32.78 N
ATOM 15 C2 U B 10 -12.440 -3.360 0.754 1.00 32.64 C
ATOM 16 O2 U B 10 -11.452 -4.030 0.512 1.00 32.10 O
ATOM 17 N3 U B 10 -12.752 -2.228 0.046 1.00 31.47 N
ATOM 18 C4 U B 10 -13.848 -1.406 0.237 1.00 32.73 C
ATOM 19 O4 U B 10 -13.997 -0.421 -0.478 1.00 31.63 O
ATOM 20 C5 U B 10 -14.735 -1.812 1.300 1.00 32.62 C
ATOM 21 C6 U B 10 -14.451 -2.916 2.004 1.00 32.70 C
ATOM 22 P G B 11 -14.012 -4.286 7.420 1.00 38.23 P
ATOM 23 OP1 G B 11 -15.038 -3.347 6.910 1.00 37.68 O
ATOM 24 OP2 G B 11 -12.942 -3.799 8.316 1.00 38.02 O
ATOM 25 O5' G B 11 -14.758 -5.514 8.131 1.00 36.73 O
TER
Atoms:
OP1: (-20.480,-15.470,10.397)
OP2: (-19.382,-17.759,10.068)
C3': (-18.241,-15.047,5.853)
C1': (-19.771,-13.288,5.645)
C5': (-19.735,-16.459,7.372)
O6: (-18.157,-8.068,8.137)
O4': (-20.389,-14.339,6.371)
C8: (-19.107,-12.258,7.897)
C2: (-19.033,-9.117,4.854)
C6: (-18.507,-8.842,7.236)
C5: (-18.786,-10.231,7.320)
C4: (-19.158,-10.899,6.176)
P: (-19.327,-16.286,9.955)
C4': (-19.638,-15.563,6.153)
C2': (-18.575,-13.899,4.917)
O2': (-18.932,-14.367,3.629)
N1: (-18.658,-8.356,5.937)
N2: (-19.130,-8.490,3.673)
N3: (-19.305,-10.411,4.922)
N7: (-18.752,-11.104,8.403)
N9: (-19.371,-12.205,6.545)
O5': (-18.979,-15.914,8.441)
O3': (-17.457,-16.024,5.195)
OP2: (-19.382,-17.759,10.068)
C3': (-18.241,-15.047,5.853)
C1': (-19.771,-13.288,5.645)
C5': (-19.735,-16.459,7.372)
O6: (-18.157,-8.068,8.137)
O4': (-20.389,-14.339,6.371)
C8: (-19.107,-12.258,7.897)
C2: (-19.033,-9.117,4.854)
C6: (-18.507,-8.842,7.236)
C5: (-18.786,-10.231,7.320)
C4: (-19.158,-10.899,6.176)
P: (-19.327,-16.286,9.955)
C4': (-19.638,-15.563,6.153)
C2': (-18.575,-13.899,4.917)
O2': (-18.932,-14.367,3.629)
N1: (-18.658,-8.356,5.937)
N2: (-19.130,-8.490,3.673)
N3: (-19.305,-10.411,4.922)
N7: (-18.752,-11.104,8.403)
N9: (-19.371,-12.205,6.545)
O5': (-18.979,-15.914,8.441)
O3': (-17.457,-16.024,5.195)
C4: (-13.848,-1.406,0.237)
N3: (-12.752,-2.228,0.046)
OP1: (-18.561,-5.613,5.423)
OP2: (-18.420,-3.414,4.101)
C2: (-12.440,-3.360,0.754)
C1': (-13.039,-4.893,2.575)
C3': (-13.684,-4.720,4.854)
O5': (-16.454,-4.897,4.286)
O4': (-14.208,-5.659,2.792)
C5': (-15.788,-6.124,4.534)
P: (-18.045,-4.834,4.275)
C4': (-14.323,-5.938,4.207)
C2': (-12.478,-4.507,3.944)
O2': (-11.386,-5.341,4.281)
N1: (-13.339,-3.694,1.744)
O4: (-13.997,-0.421,-0.478)
O2: (-11.452,-4.030,0.512)
C6: (-14.451,-2.916,2.004)
C5: (-14.735,-1.812,1.300)
O3': (-13.291,-5.004,6.185)
N3: (-12.752,-2.228,0.046)
OP1: (-18.561,-5.613,5.423)
OP2: (-18.420,-3.414,4.101)
C2: (-12.440,-3.360,0.754)
C1': (-13.039,-4.893,2.575)
C3': (-13.684,-4.720,4.854)
O5': (-16.454,-4.897,4.286)
O4': (-14.208,-5.659,2.792)
C5': (-15.788,-6.124,4.534)
P: (-18.045,-4.834,4.275)
C4': (-14.323,-5.938,4.207)
C2': (-12.478,-4.507,3.944)
O2': (-11.386,-5.341,4.281)
N1: (-13.339,-3.694,1.744)
O4: (-13.997,-0.421,-0.478)
O2: (-11.452,-4.030,0.512)
C6: (-14.451,-2.916,2.004)
C5: (-14.735,-1.812,1.300)
O3': (-13.291,-5.004,6.185)
Image (generated by PyMOL):