ClaRNA

Doublet info:

Details

Nucleotide types: AC
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A407:A1878

Extra

PDB:
ATOM 1 O3' C A 406 83.686 85.637 33.960 1.00 62.75 O
ATOM 2 P A A 407 84.344 85.362 32.510 1.00 65.67 P
ATOM 3 OP1 A A 407 84.641 86.688 31.887 1.00 66.21 O
ATOM 4 OP2 A A 407 83.454 84.401 31.797 1.00 66.29 O
ATOM 5 O5' A A 407 85.725 84.612 32.801 1.00 65.45 O
ATOM 6 C5' A A 407 86.835 85.317 33.397 1.00 66.89 C
ATOM 7 C4' A A 407 88.045 84.424 33.477 1.00 68.04 C
ATOM 8 O4' A A 407 87.777 83.317 34.375 1.00 68.38 O
ATOM 9 C3' A A 407 88.422 83.771 32.161 1.00 69.18 C
ATOM 10 O3' A A 407 89.222 84.654 31.398 1.00 72.87 O
ATOM 11 C2' A A 407 89.169 82.529 32.618 1.00 68.21 C
ATOM 12 O2' A A 407 90.493 82.823 33.022 1.00 67.23 O
ATOM 13 C1' A A 407 88.335 82.127 33.844 1.00 67.97 C
ATOM 14 N9 A A 407 87.223 81.212 33.569 1.00 67.25 N
ATOM 15 C8 A A 407 85.901 81.544 33.363 1.00 66.62 C
ATOM 16 N7 A A 407 85.123 80.510 33.140 1.00 66.11 N
ATOM 17 C5 A A 407 85.989 79.421 33.206 1.00 66.36 C
ATOM 18 C6 A A 407 85.786 78.030 33.063 1.00 66.05 C
ATOM 19 N6 A A 407 84.599 77.476 32.797 1.00 65.10 N
ATOM 20 N1 A A 407 86.865 77.220 33.204 1.00 66.18 N
ATOM 21 C2 A A 407 88.060 77.774 33.461 1.00 65.94 C
ATOM 22 N3 A A 407 88.377 79.058 33.613 1.00 65.50 N
ATOM 23 C4 A A 407 87.286 79.840 33.472 1.00 66.47 C
ATOM 24 P U A 408 89.090 84.669 29.797 1.00 75.38 P
ATOM 25 OP1 U A 408 89.901 85.832 29.325 1.00 74.55 O
ATOM 26 OP2 U A 408 87.660 84.561 29.386 1.00 75.61 O
ATOM 27 O5' U A 408 89.841 83.334 29.367 1.00 75.40 O
TER

ATOM 1 O3' A B1877 98.041 76.906 30.274 1.00 89.64 O
ATOM 2 P C B1878 98.572 77.468 31.690 1.00 89.28 P
ATOM 3 OP1 C B1878 100.065 77.453 31.696 1.00 88.34 O
ATOM 4 OP2 C B1878 97.832 76.688 32.721 1.00 90.10 O
ATOM 5 O5' C B1878 98.099 78.995 31.743 1.00 87.48 O
ATOM 6 C5' C B1878 98.700 80.009 30.898 1.00 85.58 C
ATOM 7 C4' C B1878 97.936 81.322 31.019 1.00 83.70 C
ATOM 8 O4' C B1878 96.593 81.160 30.481 1.00 83.72 O
ATOM 9 C3' C B1878 97.727 81.888 32.426 1.00 82.91 C
ATOM 10 O3' C B1878 98.840 82.685 32.863 1.00 81.33 O
ATOM 11 C2' C B1878 96.496 82.775 32.249 1.00 83.15 C
ATOM 12 O2' C B1878 96.821 84.076 31.797 1.00 82.17 O
ATOM 13 C1' C B1878 95.694 82.009 31.184 1.00 83.65 C
ATOM 14 N1 C B1878 94.558 81.200 31.695 1.00 83.78 N
ATOM 15 C2 C B1878 93.423 81.861 32.216 1.00 83.25 C
ATOM 16 O2 C B1878 93.418 83.103 32.283 1.00 82.44 O
ATOM 17 N3 C B1878 92.367 81.125 32.636 1.00 83.50 N
ATOM 18 C4 C B1878 92.410 79.793 32.571 1.00 84.06 C
ATOM 19 N4 C B1878 91.339 79.117 32.988 1.00 84.23 N
ATOM 20 C5 C B1878 93.550 79.097 32.074 1.00 84.24 C
ATOM 21 C6 C B1878 94.591 79.830 31.651 1.00 83.79 C
ATOM 22 P A B1879 99.165 82.852 34.439 1.00 80.19 P
ATOM 23 OP1 A B1879 100.011 84.075 34.605 1.00 79.90 O
ATOM 24 OP2 A B1879 99.675 81.538 34.909 1.00 81.46 O
ATOM 25 O5' A B1879 97.763 83.164 35.125 1.00 79.88 O
TER

Atoms:
OP1: (84.641,86.688,31.887)
OP2: (83.454,84.401,31.797)
C3': (88.422,83.771,32.161)
C1': (88.335,82.127,33.844)
C5': (86.835,85.317,33.397)
O4': (87.777,83.317,34.375)
C8: (85.901,81.544,33.363)
O2': (90.493,82.823,33.022)
C6: (85.786,78.030,33.063)
C5: (85.989,79.421,33.206)
C4: (87.286,79.840,33.472)
P: (84.344,85.362,32.510)
C4': (88.045,84.424,33.477)
C2': (89.169,82.529,32.618)
C2: (88.060,77.774,33.461)
N1: (86.865,77.220,33.204)
N3: (88.377,79.058,33.613)
N6: (84.599,77.476,32.797)
N7: (85.123,80.510,33.140)
N9: (87.223,81.212,33.569)
O5': (85.725,84.612,32.801)
O3': (89.222,84.654,31.398)
C2: (93.423,81.861,32.216)
OP1: (100.065,77.453,31.696)
OP2: (97.832,76.688,32.721)
C4: (92.410,79.793,32.571)
O5': (98.099,78.995,31.743)
C3': (97.727,81.888,32.426)
C1': (95.694,82.009,31.184)
O4': (96.593,81.160,30.481)
C5': (98.700,80.009,30.898)
P: (98.572,77.468,31.690)
O2: (93.418,83.103,32.283)
C4': (97.936,81.322,31.019)
C2': (96.496,82.775,32.249)
O2': (96.821,84.076,31.797)
N1: (94.558,81.200,31.695)
N3: (92.367,81.125,32.636)
N4: (91.339,79.117,32.988)
C6: (94.591,79.830,31.651)
C5: (93.550,79.097,32.074)
O3': (98.840,82.685,32.863)
Image (generated by PyMOL):
PyMOL image
show in jmol