ClaRNA

Doublet info:

Details

Nucleotide types: AG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJ9:0496:0470

Extra

PDB:
ATOM 1 O3' A A 495 10.659 153.926 58.010 1.00 63.30 O
ATOM 2 P A A 496 11.618 154.961 58.771 1.00 63.42 P
ATOM 3 OP1 A A 496 10.793 155.707 59.760 1.00 62.42 O
ATOM 4 OP2 A A 496 12.385 155.708 57.744 1.00 64.25 O
ATOM 5 O5' A A 496 12.645 154.030 59.551 1.00 62.55 O
ATOM 6 C5' A A 496 12.195 153.069 60.520 1.00 61.18 C
ATOM 7 C4' A A 496 13.310 152.113 60.830 1.00 60.79 C
ATOM 8 O4' A A 496 13.725 151.483 59.593 1.00 60.58 O
ATOM 9 C3' A A 496 14.565 152.783 61.361 1.00 62.02 C
ATOM 10 O3' A A 496 14.490 152.883 62.777 1.00 63.14 O
ATOM 11 C2' A A 496 15.661 151.817 60.935 1.00 62.84 C
ATOM 12 O2' A A 496 15.742 150.709 61.810 1.00 66.92 O
ATOM 13 C1' A A 496 15.132 151.326 59.584 1.00 60.73 C
ATOM 14 N9 A A 496 15.669 151.996 58.397 1.00 58.22 N
ATOM 15 C8 A A 496 15.265 153.175 57.819 1.00 57.61 C
ATOM 16 N7 A A 496 15.918 153.479 56.723 1.00 55.06 N
ATOM 17 C5 A A 496 16.818 152.436 56.574 1.00 56.55 C
ATOM 18 C6 A A 496 17.794 152.158 55.597 1.00 56.60 C
ATOM 19 N6 A A 496 18.018 152.920 54.524 1.00 54.93 N
ATOM 20 N1 A A 496 18.537 151.044 55.759 1.00 56.89 N
ATOM 21 C2 A A 496 18.300 150.261 56.822 1.00 55.99 C
ATOM 22 N3 A A 496 17.407 150.408 57.793 1.00 56.28 N
ATOM 23 C4 A A 496 16.689 151.526 57.609 1.00 56.98 C
ATOM 24 P A A 497 14.685 154.302 63.498 1.00 64.29 P
ATOM 25 OP1 A A 497 13.995 154.245 64.804 1.00 66.48 O
ATOM 26 OP2 A A 497 14.352 155.375 62.538 1.00 64.43 O
ATOM 27 O5' A A 497 16.228 154.358 63.851 1.00 64.80 O
TER

ATOM 1 O3' U B 469 24.712 149.421 56.437 1.00 51.30 O
ATOM 2 P G B 470 24.043 148.427 55.368 1.00 53.66 P
ATOM 3 OP1 G B 470 23.188 147.466 56.112 1.00 52.76 O
ATOM 4 OP2 G B 470 25.089 147.913 54.438 1.00 51.60 O
ATOM 5 O5' G B 470 23.106 149.394 54.529 1.00 53.15 O
ATOM 6 C5' G B 470 22.044 150.113 55.163 1.00 53.13 C
ATOM 7 C4' G B 470 21.464 151.118 54.212 1.00 52.87 C
ATOM 8 O4' G B 470 22.400 152.206 54.022 1.00 53.81 O
ATOM 9 C3' G B 470 21.232 150.632 52.796 1.00 53.78 C
ATOM 10 O3' G B 470 20.077 149.820 52.689 1.00 54.13 O
ATOM 11 C2' G B 470 21.104 151.951 52.051 1.00 55.09 C
ATOM 12 O2' G B 470 19.855 152.579 52.247 1.00 59.82 O
ATOM 13 C1' G B 470 22.178 152.788 52.750 1.00 55.48 C
ATOM 14 N9 G B 470 23.415 152.769 51.980 1.00 55.59 N
ATOM 15 C8 G B 470 24.381 151.794 51.954 1.00 55.28 C
ATOM 16 N7 G B 470 25.313 152.022 51.069 1.00 55.56 N
ATOM 17 C5 G B 470 24.953 153.232 50.494 1.00 55.45 C
ATOM 18 C6 G B 470 25.568 153.981 49.454 1.00 54.62 C
ATOM 19 O6 G B 470 26.575 153.703 48.796 1.00 54.22 O
ATOM 20 N1 G B 470 24.876 155.162 49.195 1.00 55.30 N
ATOM 21 C2 G B 470 23.732 155.569 49.843 1.00 55.34 C
ATOM 22 N2 G B 470 23.211 156.746 49.459 1.00 54.75 N
ATOM 23 N3 G B 470 23.141 154.873 50.798 1.00 56.22 N
ATOM 24 C4 G B 470 23.801 153.723 51.070 1.00 56.64 C
ATOM 25 P C B 471 20.034 148.632 51.604 1.00 57.06 P
ATOM 26 OP1 C B 471 18.857 147.784 51.918 1.00 57.92 O
ATOM 27 OP2 C B 471 21.377 148.004 51.483 1.00 56.43 O
ATOM 28 O5' C B 471 19.745 149.379 50.229 1.00 59.49 O
TER

Atoms:
OP1: (10.793,155.707,59.760)
OP2: (12.385,155.708,57.744)
C3': (14.565,152.783,61.361)
C1': (15.132,151.326,59.584)
C5': (12.195,153.069,60.520)
O4': (13.725,151.483,59.593)
C8: (15.265,153.175,57.819)
O2': (15.742,150.709,61.810)
C6: (17.794,152.158,55.597)
C5: (16.818,152.436,56.574)
C4: (16.689,151.526,57.609)
P: (11.618,154.961,58.771)
C4': (13.310,152.113,60.830)
C2': (15.661,151.817,60.935)
C2: (18.300,150.261,56.822)
N1: (18.537,151.044,55.759)
N3: (17.407,150.408,57.793)
N6: (18.018,152.920,54.524)
N7: (15.918,153.479,56.723)
N9: (15.669,151.996,58.397)
O5': (12.645,154.030,59.551)
O3': (14.490,152.883,62.777)
OP1: (23.188,147.466,56.112)
OP2: (25.089,147.913,54.438)
C3': (21.232,150.632,52.796)
C1': (22.178,152.788,52.750)
C5': (22.044,150.113,55.163)
O6: (26.575,153.703,48.796)
O4': (22.400,152.206,54.022)
C8: (24.381,151.794,51.954)
C2: (23.732,155.569,49.843)
C6: (25.568,153.981,49.454)
C5: (24.953,153.232,50.494)
C4: (23.801,153.723,51.070)
P: (24.043,148.427,55.368)
C4': (21.464,151.118,54.212)
C2': (21.104,151.951,52.051)
O2': (19.855,152.579,52.247)
N1: (24.876,155.162,49.195)
N2: (23.211,156.746,49.459)
N3: (23.141,154.873,50.798)
N7: (25.313,152.022,51.069)
N9: (23.415,152.769,51.980)
O5': (23.106,149.394,54.529)
O3': (20.077,149.820,52.689)
Image (generated by PyMOL):
PyMOL image
show in jmol