Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1U8D:A61:A34
Extra
PDB:
ATOM 1 O3' U A 60 5.251 13.115 14.372 1.00 21.73 O
ATOM 2 P A A 61 3.836 12.353 14.321 1.00 22.14 P
ATOM 3 OP1 A A 61 2.880 13.223 15.033 1.00 23.41 O
ATOM 4 OP2 A A 61 4.009 10.938 14.753 1.00 21.70 O
ATOM 5 O5' A A 61 3.415 12.341 12.788 1.00 21.20 O
ATOM 6 C5' A A 61 3.300 13.552 12.057 1.00 20.43 C
ATOM 7 C4' A A 61 2.982 13.261 10.610 1.00 21.53 C
ATOM 8 O4' A A 61 4.176 12.824 9.881 1.00 20.76 O
ATOM 9 C3' A A 61 1.979 12.147 10.385 1.00 21.60 C
ATOM 10 O3' A A 61 0.644 12.615 10.600 1.00 24.70 O
ATOM 11 C2' A A 61 2.288 11.751 8.942 1.00 20.85 C
ATOM 12 O2' A A 61 1.813 12.741 8.049 1.00 18.38 O
ATOM 13 C1' A A 61 3.818 11.834 8.924 1.00 18.33 C
ATOM 14 N9 A A 61 4.448 10.557 9.291 1.00 18.89 N
ATOM 15 C8 A A 61 4.743 10.092 10.543 1.00 18.84 C
ATOM 16 N7 A A 61 5.292 8.890 10.552 1.00 19.05 N
ATOM 17 C5 A A 61 5.370 8.549 9.213 1.00 17.84 C
ATOM 18 C6 A A 61 5.873 7.410 8.545 1.00 18.46 C
ATOM 19 N6 A A 61 6.430 6.353 9.151 1.00 16.69 N
ATOM 20 N1 A A 61 5.789 7.395 7.198 1.00 18.58 N
ATOM 21 C2 A A 61 5.262 8.451 6.577 1.00 18.00 C
ATOM 22 N3 A A 61 4.779 9.581 7.089 1.00 17.69 N
ATOM 23 C4 A A 61 4.855 9.566 8.424 1.00 18.36 C
ATOM 24 P U A 62 -0.490 11.589 11.092 1.00 27.25 P
ATOM 25 OP1 U A 62 -1.718 12.394 11.304 1.00 28.56 O
ATOM 26 OP2 U A 62 0.014 10.721 12.181 1.00 27.58 O
ATOM 27 O5' U A 62 -0.735 10.633 9.847 1.00 26.15 O
TER
ATOM 1 O3' U B 33 3.091 15.908 -1.719 1.00 21.98 O
ATOM 2 P U B 34 4.393 16.672 -1.154 1.00 24.27 P
ATOM 3 OP1 U B 34 4.112 18.081 -1.444 1.00 21.67 O
ATOM 4 OP2 U B 34 5.651 16.051 -1.658 1.00 22.02 O
ATOM 5 O5' U B 34 4.355 16.404 0.420 1.00 21.65 O
ATOM 6 C5' U B 34 3.224 16.736 1.195 1.00 22.80 C
ATOM 7 C4' U B 34 3.533 16.647 2.677 1.00 22.95 C
ATOM 8 O4' U B 34 3.474 15.273 3.129 1.00 24.98 O
ATOM 9 C3' U B 34 4.962 17.109 2.990 1.00 23.23 C
ATOM 10 O3' U B 34 4.958 17.936 4.127 1.00 22.14 O
ATOM 11 C2' U B 34 5.807 15.844 3.138 1.00 22.97 C
ATOM 12 O2' U B 34 6.804 15.917 4.151 1.00 21.66 O
ATOM 13 C1' U B 34 4.739 14.866 3.606 1.00 21.87 C
ATOM 14 N1 U B 34 4.895 13.418 3.466 1.00 20.97 N
ATOM 15 C2 U B 34 4.504 12.676 4.556 1.00 18.94 C
ATOM 16 O2 U B 34 4.042 13.182 5.570 1.00 19.40 O
ATOM 17 N3 U B 34 4.657 11.327 4.423 1.00 19.76 N
ATOM 18 C4 U B 34 5.143 10.659 3.335 1.00 19.27 C
ATOM 19 O4 U B 34 5.181 9.441 3.367 1.00 19.94 O
ATOM 20 C5 U B 34 5.533 11.493 2.231 1.00 19.78 C
ATOM 21 C6 U B 34 5.398 12.822 2.336 1.00 21.36 C
ATOM 22 P C B 35 6.149 18.965 4.371 1.00 25.95 P
ATOM 23 OP1 C B 35 5.898 20.166 3.536 1.00 23.44 O
ATOM 24 OP2 C B 35 7.459 18.286 4.288 1.00 25.26 O
ATOM 25 O5' C B 35 5.932 19.376 5.884 1.00 22.51 O
TER
ATOM 2 P A A 61 3.836 12.353 14.321 1.00 22.14 P
ATOM 3 OP1 A A 61 2.880 13.223 15.033 1.00 23.41 O
ATOM 4 OP2 A A 61 4.009 10.938 14.753 1.00 21.70 O
ATOM 5 O5' A A 61 3.415 12.341 12.788 1.00 21.20 O
ATOM 6 C5' A A 61 3.300 13.552 12.057 1.00 20.43 C
ATOM 7 C4' A A 61 2.982 13.261 10.610 1.00 21.53 C
ATOM 8 O4' A A 61 4.176 12.824 9.881 1.00 20.76 O
ATOM 9 C3' A A 61 1.979 12.147 10.385 1.00 21.60 C
ATOM 10 O3' A A 61 0.644 12.615 10.600 1.00 24.70 O
ATOM 11 C2' A A 61 2.288 11.751 8.942 1.00 20.85 C
ATOM 12 O2' A A 61 1.813 12.741 8.049 1.00 18.38 O
ATOM 13 C1' A A 61 3.818 11.834 8.924 1.00 18.33 C
ATOM 14 N9 A A 61 4.448 10.557 9.291 1.00 18.89 N
ATOM 15 C8 A A 61 4.743 10.092 10.543 1.00 18.84 C
ATOM 16 N7 A A 61 5.292 8.890 10.552 1.00 19.05 N
ATOM 17 C5 A A 61 5.370 8.549 9.213 1.00 17.84 C
ATOM 18 C6 A A 61 5.873 7.410 8.545 1.00 18.46 C
ATOM 19 N6 A A 61 6.430 6.353 9.151 1.00 16.69 N
ATOM 20 N1 A A 61 5.789 7.395 7.198 1.00 18.58 N
ATOM 21 C2 A A 61 5.262 8.451 6.577 1.00 18.00 C
ATOM 22 N3 A A 61 4.779 9.581 7.089 1.00 17.69 N
ATOM 23 C4 A A 61 4.855 9.566 8.424 1.00 18.36 C
ATOM 24 P U A 62 -0.490 11.589 11.092 1.00 27.25 P
ATOM 25 OP1 U A 62 -1.718 12.394 11.304 1.00 28.56 O
ATOM 26 OP2 U A 62 0.014 10.721 12.181 1.00 27.58 O
ATOM 27 O5' U A 62 -0.735 10.633 9.847 1.00 26.15 O
TER
ATOM 1 O3' U B 33 3.091 15.908 -1.719 1.00 21.98 O
ATOM 2 P U B 34 4.393 16.672 -1.154 1.00 24.27 P
ATOM 3 OP1 U B 34 4.112 18.081 -1.444 1.00 21.67 O
ATOM 4 OP2 U B 34 5.651 16.051 -1.658 1.00 22.02 O
ATOM 5 O5' U B 34 4.355 16.404 0.420 1.00 21.65 O
ATOM 6 C5' U B 34 3.224 16.736 1.195 1.00 22.80 C
ATOM 7 C4' U B 34 3.533 16.647 2.677 1.00 22.95 C
ATOM 8 O4' U B 34 3.474 15.273 3.129 1.00 24.98 O
ATOM 9 C3' U B 34 4.962 17.109 2.990 1.00 23.23 C
ATOM 10 O3' U B 34 4.958 17.936 4.127 1.00 22.14 O
ATOM 11 C2' U B 34 5.807 15.844 3.138 1.00 22.97 C
ATOM 12 O2' U B 34 6.804 15.917 4.151 1.00 21.66 O
ATOM 13 C1' U B 34 4.739 14.866 3.606 1.00 21.87 C
ATOM 14 N1 U B 34 4.895 13.418 3.466 1.00 20.97 N
ATOM 15 C2 U B 34 4.504 12.676 4.556 1.00 18.94 C
ATOM 16 O2 U B 34 4.042 13.182 5.570 1.00 19.40 O
ATOM 17 N3 U B 34 4.657 11.327 4.423 1.00 19.76 N
ATOM 18 C4 U B 34 5.143 10.659 3.335 1.00 19.27 C
ATOM 19 O4 U B 34 5.181 9.441 3.367 1.00 19.94 O
ATOM 20 C5 U B 34 5.533 11.493 2.231 1.00 19.78 C
ATOM 21 C6 U B 34 5.398 12.822 2.336 1.00 21.36 C
ATOM 22 P C B 35 6.149 18.965 4.371 1.00 25.95 P
ATOM 23 OP1 C B 35 5.898 20.166 3.536 1.00 23.44 O
ATOM 24 OP2 C B 35 7.459 18.286 4.288 1.00 25.26 O
ATOM 25 O5' C B 35 5.932 19.376 5.884 1.00 22.51 O
TER
Atoms:
OP1: (2.880,13.223,15.033)
OP2: (4.009,10.938,14.753)
C3': (1.979,12.147,10.385)
C1': (3.818,11.834,8.924)
C5': (3.300,13.552,12.057)
O4': (4.176,12.824,9.881)
C8: (4.743,10.092,10.543)
O2': (1.813,12.741,8.049)
C6: (5.873,7.410,8.545)
C5: (5.370,8.549,9.213)
C4: (4.855,9.566,8.424)
P: (3.836,12.353,14.321)
C4': (2.982,13.261,10.610)
C2': (2.288,11.751,8.942)
C2: (5.262,8.451,6.577)
N1: (5.789,7.395,7.198)
N3: (4.779,9.581,7.089)
N6: (6.430,6.353,9.151)
N7: (5.292,8.890,10.552)
N9: (4.448,10.557,9.291)
O5': (3.415,12.341,12.788)
O3': (0.644,12.615,10.600)
OP2: (4.009,10.938,14.753)
C3': (1.979,12.147,10.385)
C1': (3.818,11.834,8.924)
C5': (3.300,13.552,12.057)
O4': (4.176,12.824,9.881)
C8: (4.743,10.092,10.543)
O2': (1.813,12.741,8.049)
C6: (5.873,7.410,8.545)
C5: (5.370,8.549,9.213)
C4: (4.855,9.566,8.424)
P: (3.836,12.353,14.321)
C4': (2.982,13.261,10.610)
C2': (2.288,11.751,8.942)
C2: (5.262,8.451,6.577)
N1: (5.789,7.395,7.198)
N3: (4.779,9.581,7.089)
N6: (6.430,6.353,9.151)
N7: (5.292,8.890,10.552)
N9: (4.448,10.557,9.291)
O5': (3.415,12.341,12.788)
O3': (0.644,12.615,10.600)
C4: (5.143,10.659,3.335)
N3: (4.657,11.327,4.423)
OP1: (4.112,18.081,-1.444)
OP2: (5.651,16.051,-1.658)
C2: (4.504,12.676,4.556)
C1': (4.739,14.866,3.606)
C3': (4.962,17.109,2.990)
O5': (4.355,16.404,0.420)
O4': (3.474,15.273,3.129)
C5': (3.224,16.736,1.195)
P: (4.393,16.672,-1.154)
C4': (3.533,16.647,2.677)
C2': (5.807,15.844,3.138)
O2': (6.804,15.917,4.151)
N1: (4.895,13.418,3.466)
O4: (5.181,9.441,3.367)
O2: (4.042,13.182,5.570)
C6: (5.398,12.822,2.336)
C5: (5.533,11.493,2.231)
O3': (4.958,17.936,4.127)
N3: (4.657,11.327,4.423)
OP1: (4.112,18.081,-1.444)
OP2: (5.651,16.051,-1.658)
C2: (4.504,12.676,4.556)
C1': (4.739,14.866,3.606)
C3': (4.962,17.109,2.990)
O5': (4.355,16.404,0.420)
O4': (3.474,15.273,3.129)
C5': (3.224,16.736,1.195)
P: (4.393,16.672,-1.154)
C4': (3.533,16.647,2.677)
C2': (5.807,15.844,3.138)
O2': (6.804,15.917,4.151)
N1: (4.895,13.418,3.466)
O4: (5.181,9.441,3.367)
O2: (4.042,13.182,5.570)
C6: (5.398,12.822,2.336)
C5: (5.533,11.493,2.231)
O3': (4.958,17.936,4.127)
Image (generated by PyMOL):