ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1208:1225

Extra

PDB:
ATOM 1 O3' U A 207 104.836 -15.871 108.037 1.00 59.94 O
ATOM 2 P A A 208 104.558 -15.213 106.540 1.00 55.14 P
ATOM 3 OP1 A A 208 103.345 -15.862 106.013 1.00 54.64 O
ATOM 4 OP2 A A 208 105.819 -15.334 105.750 1.00 55.31 O
ATOM 5 O5' A A 208 104.222 -13.663 106.832 1.00 55.06 O
ATOM 6 C5' A A 208 102.868 -13.218 106.901 1.00 54.64 C
ATOM 7 C4' A A 208 102.728 -11.724 107.146 1.00 54.63 C
ATOM 8 O4' A A 208 103.438 -11.348 108.361 1.00 55.21 O
ATOM 9 C3' A A 208 103.262 -10.805 106.044 1.00 54.43 C
ATOM 10 O3' A A 208 102.500 -9.588 106.031 1.00 54.18 O
ATOM 11 C2' A A 208 104.659 -10.492 106.556 1.00 55.02 C
ATOM 12 O2' A A 208 105.242 -9.340 106.004 1.00 55.01 O
ATOM 13 C1' A A 208 104.376 -10.325 108.047 1.00 55.39 C
ATOM 14 N9 A A 208 105.553 -10.465 108.914 1.00 56.04 N
ATOM 15 C8 A A 208 106.704 -11.199 108.756 1.00 56.37 C
ATOM 16 N7 A A 208 107.597 -11.061 109.736 1.00 56.98 N
ATOM 17 C5 A A 208 106.977 -10.167 110.598 1.00 57.05 C
ATOM 18 C6 A A 208 107.369 -9.601 111.827 1.00 57.58 C
ATOM 19 N6 A A 208 108.508 -9.853 112.432 1.00 58.17 N
ATOM 20 N1 A A 208 106.540 -8.739 112.431 1.00 57.51 N
ATOM 21 C2 A A 208 105.375 -8.486 111.802 1.00 56.91 C
ATOM 22 N3 A A 208 104.880 -8.932 110.640 1.00 56.37 N
ATOM 23 C4 A A 208 105.738 -9.788 110.083 1.00 56.47 C
ATOM 24 P G A 209 101.100 -9.508 105.257 1.00 54.01 P
ATOM 25 OP1 G A 209 100.641 -8.103 105.287 1.00 53.87 O
ATOM 26 OP2 G A 209 100.230 -10.526 105.838 1.00 53.94 O
ATOM 27 O5' G A 209 101.499 -9.917 103.767 1.00 53.70 O
TER

ATOM 1 O3' G B 224 95.616 -5.877 112.793 1.00 53.67 O
ATOM 2 P U B 225 96.071 -7.330 113.256 1.00 51.68 P
ATOM 3 OP1 U B 225 94.851 -8.068 113.653 1.00 51.47 O
ATOM 4 OP2 U B 225 97.170 -7.136 114.266 1.00 52.34 O
ATOM 5 O5' U B 225 96.660 -7.955 111.923 1.00 51.39 O
ATOM 6 C5' U B 225 95.854 -8.190 110.808 1.00 50.80 C
ATOM 7 C4' U B 225 96.673 -8.779 109.712 1.00 50.67 C
ATOM 8 O4' U B 225 97.660 -7.818 109.279 1.00 50.81 O
ATOM 9 C3' U B 225 97.477 -9.983 110.108 1.00 51.03 C
ATOM 10 O3' U B 225 96.723 -11.158 110.010 1.00 50.81 O
ATOM 11 C2' U B 225 98.658 -9.947 109.155 1.00 51.07 C
ATOM 12 O2' U B 225 98.294 -10.471 107.899 1.00 50.58 O
ATOM 13 C1' U B 225 98.881 -8.456 108.992 1.00 51.07 C
ATOM 14 N1 U B 225 99.928 -7.925 109.927 1.00 51.67 N
ATOM 15 C2 U B 225 101.301 -8.140 109.727 1.00 52.01 C
ATOM 16 O2 U B 225 101.823 -8.793 108.841 1.00 51.89 O
ATOM 17 N3 U B 225 102.126 -7.591 110.654 1.00 52.57 N
ATOM 18 C4 U B 225 101.769 -6.843 111.740 1.00 52.82 C
ATOM 19 O4 U B 225 102.644 -6.412 112.492 1.00 53.35 O
ATOM 20 C5 U B 225 100.348 -6.645 111.852 1.00 52.44 C
ATOM 21 C6 U B 225 99.498 -7.165 110.983 1.00 51.89 C
ATOM 22 P G B 226 96.847 -12.278 111.133 1.00 50.43 P
ATOM 23 OP1 G B 226 95.954 -13.389 110.738 1.00 50.08 O
ATOM 24 OP2 G B 226 96.615 -11.601 112.447 1.00 50.78 O
ATOM 25 O5' G B 226 98.360 -12.730 110.967 1.00 50.82 O
TER

Atoms:
OP1: (103.345,-15.862,106.013)
OP2: (105.819,-15.334,105.750)
C3': (103.262,-10.805,106.044)
C1': (104.376,-10.325,108.047)
C5': (102.868,-13.218,106.901)
O4': (103.438,-11.348,108.361)
C8: (106.704,-11.199,108.756)
O2': (105.242,-9.340,106.004)
C6: (107.369,-9.601,111.827)
C5: (106.977,-10.167,110.598)
C4: (105.738,-9.788,110.083)
P: (104.558,-15.213,106.540)
C4': (102.728,-11.724,107.146)
C2': (104.659,-10.492,106.556)
C2: (105.375,-8.486,111.802)
N1: (106.540,-8.739,112.431)
N3: (104.880,-8.932,110.640)
N6: (108.508,-9.853,112.432)
N7: (107.597,-11.061,109.736)
N9: (105.553,-10.465,108.914)
O5': (104.222,-13.663,106.832)
O3': (102.500,-9.588,106.031)
C4: (101.769,-6.843,111.740)
N3: (102.126,-7.591,110.654)
OP1: (94.851,-8.068,113.653)
OP2: (97.170,-7.136,114.266)
C2: (101.301,-8.140,109.727)
C1': (98.881,-8.456,108.992)
C3': (97.477,-9.983,110.108)
O5': (96.660,-7.955,111.923)
O4': (97.660,-7.818,109.279)
C5': (95.854,-8.190,110.808)
P: (96.071,-7.330,113.256)
C4': (96.673,-8.779,109.712)
C2': (98.658,-9.947,109.155)
O2': (98.294,-10.471,107.899)
N1: (99.928,-7.925,109.927)
O4: (102.644,-6.412,112.492)
O2: (101.823,-8.793,108.841)
C6: (99.498,-7.165,110.983)
C5: (100.348,-6.645,111.852)
O3': (96.723,-11.158,110.010)
Image (generated by PyMOL):
PyMOL image
show in jmol