Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A234:A252
Extra
PDB:
ATOM 1 O3' C A 233 92.857 111.907 -9.189 1.00 68.46 O
ATOM 2 P G A 234 94.339 112.511 -9.294 1.00 71.43 P
ATOM 3 OP1 G A 234 94.565 112.801 -10.748 1.00 71.01 O
ATOM 4 OP2 G A 234 95.277 111.601 -8.568 1.00 70.40 O
ATOM 5 O5' G A 234 94.205 113.889 -8.502 1.00 70.05 O
ATOM 6 C5' G A 234 93.015 114.687 -8.651 1.00 68.58 C
ATOM 7 C4' G A 234 93.040 115.850 -7.701 1.00 68.14 C
ATOM 8 O4' G A 234 92.808 115.364 -6.346 1.00 68.43 O
ATOM 9 C3' G A 234 94.352 116.625 -7.679 1.00 67.80 C
ATOM 10 O3' G A 234 94.122 118.026 -7.567 1.00 68.55 O
ATOM 11 C2' G A 234 95.055 116.048 -6.456 1.00 67.70 C
ATOM 12 O2' G A 234 95.987 116.943 -5.888 1.00 66.94 O
ATOM 13 C1' G A 234 93.880 115.747 -5.517 1.00 68.44 C
ATOM 14 N9 G A 234 94.157 114.659 -4.576 1.00 69.17 N
ATOM 15 C8 G A 234 94.704 113.429 -4.874 1.00 69.23 C
ATOM 16 N7 G A 234 94.962 112.710 -3.814 1.00 69.69 N
ATOM 17 C5 G A 234 94.540 113.499 -2.749 1.00 69.79 C
ATOM 18 C6 G A 234 94.606 113.266 -1.347 1.00 70.16 C
ATOM 19 O6 G A 234 95.105 112.303 -0.745 1.00 69.77 O
ATOM 20 N1 G A 234 94.034 114.313 -0.628 1.00 70.17 N
ATOM 21 C2 G A 234 93.485 115.446 -1.177 1.00 70.05 C
ATOM 22 N2 G A 234 92.964 116.328 -0.309 1.00 71.26 N
ATOM 23 N3 G A 234 93.447 115.694 -2.478 1.00 69.63 N
ATOM 24 C4 G A 234 93.992 114.686 -3.202 1.00 69.58 C
ATOM 25 P A A 235 94.730 119.021 -8.684 1.00 69.88 P
ATOM 26 OP1 A A 235 94.340 118.506 -10.027 1.00 70.89 O
ATOM 27 OP2 A A 235 96.163 119.266 -8.385 1.00 69.03 O
ATOM 28 O5' A A 235 93.953 120.387 -8.455 1.00 68.77 O
TER
ATOM 1 O3' U B 251 96.915 118.919 7.241 1.00 61.78 O
ATOM 2 P G B 252 95.603 118.182 6.649 1.00 59.87 P
ATOM 3 OP1 G B 252 94.451 118.654 7.457 1.00 60.13 O
ATOM 4 OP2 G B 252 95.867 116.729 6.518 1.00 60.02 O
ATOM 5 O5' G B 252 95.462 118.754 5.177 1.00 59.75 O
ATOM 6 C5' G B 252 95.070 120.112 4.957 1.00 59.51 C
ATOM 7 C4' G B 252 93.997 120.143 3.912 1.00 59.31 C
ATOM 8 O4' G B 252 94.574 119.793 2.627 1.00 59.61 O
ATOM 9 C3' G B 252 92.896 119.125 4.168 1.00 59.34 C
ATOM 10 O3' G B 252 91.656 119.589 3.686 1.00 59.10 O
ATOM 11 C2' G B 252 93.399 117.887 3.436 1.00 60.03 C
ATOM 12 O2' G B 252 92.403 116.980 3.000 1.00 59.66 O
ATOM 13 C1' G B 252 94.157 118.495 2.253 1.00 59.92 C
ATOM 14 N9 G B 252 95.345 117.701 1.962 1.00 60.40 N
ATOM 15 C8 G B 252 96.135 117.040 2.876 1.00 60.77 C
ATOM 16 N7 G B 252 97.051 116.300 2.318 1.00 60.84 N
ATOM 17 C5 G B 252 96.875 116.503 0.953 1.00 60.99 C
ATOM 18 C6 G B 252 97.559 115.938 -0.169 1.00 61.55 C
ATOM 19 O6 G B 252 98.467 115.081 -0.188 1.00 61.96 O
ATOM 20 N1 G B 252 97.076 116.456 -1.367 1.00 61.07 N
ATOM 21 C2 G B 252 96.067 117.386 -1.485 1.00 60.23 C
ATOM 22 N2 G B 252 95.770 117.791 -2.731 1.00 58.74 N
ATOM 23 N3 G B 252 95.406 117.889 -0.460 1.00 60.18 N
ATOM 24 C4 G B 252 95.856 117.406 0.721 1.00 60.45 C
ATOM 25 P U B 253 90.373 119.463 4.628 1.00 57.57 P
ATOM 26 OP1 U B 253 90.734 120.071 5.931 1.00 58.31 O
ATOM 27 OP2 U B 253 89.931 118.052 4.583 1.00 58.54 O
ATOM 28 O5' U B 253 89.297 120.397 3.923 1.00 57.78 O
TER
ATOM 2 P G A 234 94.339 112.511 -9.294 1.00 71.43 P
ATOM 3 OP1 G A 234 94.565 112.801 -10.748 1.00 71.01 O
ATOM 4 OP2 G A 234 95.277 111.601 -8.568 1.00 70.40 O
ATOM 5 O5' G A 234 94.205 113.889 -8.502 1.00 70.05 O
ATOM 6 C5' G A 234 93.015 114.687 -8.651 1.00 68.58 C
ATOM 7 C4' G A 234 93.040 115.850 -7.701 1.00 68.14 C
ATOM 8 O4' G A 234 92.808 115.364 -6.346 1.00 68.43 O
ATOM 9 C3' G A 234 94.352 116.625 -7.679 1.00 67.80 C
ATOM 10 O3' G A 234 94.122 118.026 -7.567 1.00 68.55 O
ATOM 11 C2' G A 234 95.055 116.048 -6.456 1.00 67.70 C
ATOM 12 O2' G A 234 95.987 116.943 -5.888 1.00 66.94 O
ATOM 13 C1' G A 234 93.880 115.747 -5.517 1.00 68.44 C
ATOM 14 N9 G A 234 94.157 114.659 -4.576 1.00 69.17 N
ATOM 15 C8 G A 234 94.704 113.429 -4.874 1.00 69.23 C
ATOM 16 N7 G A 234 94.962 112.710 -3.814 1.00 69.69 N
ATOM 17 C5 G A 234 94.540 113.499 -2.749 1.00 69.79 C
ATOM 18 C6 G A 234 94.606 113.266 -1.347 1.00 70.16 C
ATOM 19 O6 G A 234 95.105 112.303 -0.745 1.00 69.77 O
ATOM 20 N1 G A 234 94.034 114.313 -0.628 1.00 70.17 N
ATOM 21 C2 G A 234 93.485 115.446 -1.177 1.00 70.05 C
ATOM 22 N2 G A 234 92.964 116.328 -0.309 1.00 71.26 N
ATOM 23 N3 G A 234 93.447 115.694 -2.478 1.00 69.63 N
ATOM 24 C4 G A 234 93.992 114.686 -3.202 1.00 69.58 C
ATOM 25 P A A 235 94.730 119.021 -8.684 1.00 69.88 P
ATOM 26 OP1 A A 235 94.340 118.506 -10.027 1.00 70.89 O
ATOM 27 OP2 A A 235 96.163 119.266 -8.385 1.00 69.03 O
ATOM 28 O5' A A 235 93.953 120.387 -8.455 1.00 68.77 O
TER
ATOM 1 O3' U B 251 96.915 118.919 7.241 1.00 61.78 O
ATOM 2 P G B 252 95.603 118.182 6.649 1.00 59.87 P
ATOM 3 OP1 G B 252 94.451 118.654 7.457 1.00 60.13 O
ATOM 4 OP2 G B 252 95.867 116.729 6.518 1.00 60.02 O
ATOM 5 O5' G B 252 95.462 118.754 5.177 1.00 59.75 O
ATOM 6 C5' G B 252 95.070 120.112 4.957 1.00 59.51 C
ATOM 7 C4' G B 252 93.997 120.143 3.912 1.00 59.31 C
ATOM 8 O4' G B 252 94.574 119.793 2.627 1.00 59.61 O
ATOM 9 C3' G B 252 92.896 119.125 4.168 1.00 59.34 C
ATOM 10 O3' G B 252 91.656 119.589 3.686 1.00 59.10 O
ATOM 11 C2' G B 252 93.399 117.887 3.436 1.00 60.03 C
ATOM 12 O2' G B 252 92.403 116.980 3.000 1.00 59.66 O
ATOM 13 C1' G B 252 94.157 118.495 2.253 1.00 59.92 C
ATOM 14 N9 G B 252 95.345 117.701 1.962 1.00 60.40 N
ATOM 15 C8 G B 252 96.135 117.040 2.876 1.00 60.77 C
ATOM 16 N7 G B 252 97.051 116.300 2.318 1.00 60.84 N
ATOM 17 C5 G B 252 96.875 116.503 0.953 1.00 60.99 C
ATOM 18 C6 G B 252 97.559 115.938 -0.169 1.00 61.55 C
ATOM 19 O6 G B 252 98.467 115.081 -0.188 1.00 61.96 O
ATOM 20 N1 G B 252 97.076 116.456 -1.367 1.00 61.07 N
ATOM 21 C2 G B 252 96.067 117.386 -1.485 1.00 60.23 C
ATOM 22 N2 G B 252 95.770 117.791 -2.731 1.00 58.74 N
ATOM 23 N3 G B 252 95.406 117.889 -0.460 1.00 60.18 N
ATOM 24 C4 G B 252 95.856 117.406 0.721 1.00 60.45 C
ATOM 25 P U B 253 90.373 119.463 4.628 1.00 57.57 P
ATOM 26 OP1 U B 253 90.734 120.071 5.931 1.00 58.31 O
ATOM 27 OP2 U B 253 89.931 118.052 4.583 1.00 58.54 O
ATOM 28 O5' U B 253 89.297 120.397 3.923 1.00 57.78 O
TER
Atoms:
OP1: (94.565,112.801,-10.748)
OP2: (95.277,111.601,-8.568)
C3': (94.352,116.625,-7.679)
C1': (93.880,115.747,-5.517)
C5': (93.015,114.687,-8.651)
O6: (95.105,112.303,-0.745)
O4': (92.808,115.364,-6.346)
C8: (94.704,113.429,-4.874)
C2: (93.485,115.446,-1.177)
C6: (94.606,113.266,-1.347)
C5: (94.540,113.499,-2.749)
C4: (93.992,114.686,-3.202)
P: (94.339,112.511,-9.294)
C4': (93.040,115.850,-7.701)
C2': (95.055,116.048,-6.456)
O2': (95.987,116.943,-5.888)
N1: (94.034,114.313,-0.628)
N2: (92.964,116.328,-0.309)
N3: (93.447,115.694,-2.478)
N7: (94.962,112.710,-3.814)
N9: (94.157,114.659,-4.576)
O5': (94.205,113.889,-8.502)
O3': (94.122,118.026,-7.567)
OP2: (95.277,111.601,-8.568)
C3': (94.352,116.625,-7.679)
C1': (93.880,115.747,-5.517)
C5': (93.015,114.687,-8.651)
O6: (95.105,112.303,-0.745)
O4': (92.808,115.364,-6.346)
C8: (94.704,113.429,-4.874)
C2: (93.485,115.446,-1.177)
C6: (94.606,113.266,-1.347)
C5: (94.540,113.499,-2.749)
C4: (93.992,114.686,-3.202)
P: (94.339,112.511,-9.294)
C4': (93.040,115.850,-7.701)
C2': (95.055,116.048,-6.456)
O2': (95.987,116.943,-5.888)
N1: (94.034,114.313,-0.628)
N2: (92.964,116.328,-0.309)
N3: (93.447,115.694,-2.478)
N7: (94.962,112.710,-3.814)
N9: (94.157,114.659,-4.576)
O5': (94.205,113.889,-8.502)
O3': (94.122,118.026,-7.567)
OP1: (94.451,118.654,7.457)
OP2: (95.867,116.729,6.518)
C3': (92.896,119.125,4.168)
C1': (94.157,118.495,2.253)
C5': (95.070,120.112,4.957)
O6: (98.467,115.081,-0.188)
O4': (94.574,119.793,2.627)
C8: (96.135,117.040,2.876)
C2: (96.067,117.386,-1.485)
C6: (97.559,115.938,-0.169)
C5: (96.875,116.503,0.953)
C4: (95.856,117.406,0.721)
P: (95.603,118.182,6.649)
C4': (93.997,120.143,3.912)
C2': (93.399,117.887,3.436)
O2': (92.403,116.980,3.000)
N1: (97.076,116.456,-1.367)
N2: (95.770,117.791,-2.731)
N3: (95.406,117.889,-0.460)
N7: (97.051,116.300,2.318)
N9: (95.345,117.701,1.962)
O5': (95.462,118.754,5.177)
O3': (91.656,119.589,3.686)
OP2: (95.867,116.729,6.518)
C3': (92.896,119.125,4.168)
C1': (94.157,118.495,2.253)
C5': (95.070,120.112,4.957)
O6: (98.467,115.081,-0.188)
O4': (94.574,119.793,2.627)
C8: (96.135,117.040,2.876)
C2: (96.067,117.386,-1.485)
C6: (97.559,115.938,-0.169)
C5: (96.875,116.503,0.953)
C4: (95.856,117.406,0.721)
P: (95.603,118.182,6.649)
C4': (93.997,120.143,3.912)
C2': (93.399,117.887,3.436)
O2': (92.403,116.980,3.000)
N1: (97.076,116.456,-1.367)
N2: (95.770,117.791,-2.731)
N3: (95.406,117.889,-0.460)
N7: (97.051,116.300,2.318)
N9: (95.345,117.701,1.962)
O5': (95.462,118.754,5.177)
O3': (91.656,119.589,3.686)
Image (generated by PyMOL):