Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0234:0252
Extra
PDB:
ATOM 1 O3' C A 233 92.669 112.126 -9.539 1.00 60.74 O
ATOM 2 P G A 234 94.151 112.746 -9.561 1.00 62.42 P
ATOM 3 OP1 G A 234 94.476 113.130 -10.965 1.00 64.66 O
ATOM 4 OP2 G A 234 95.046 111.805 -8.830 1.00 59.26 O
ATOM 5 O5' G A 234 93.972 114.077 -8.714 1.00 59.27 O
ATOM 6 C5' G A 234 92.805 114.899 -8.900 1.00 59.95 C
ATOM 7 C4' G A 234 92.855 116.077 -7.970 1.00 60.78 C
ATOM 8 O4' G A 234 92.644 115.613 -6.606 1.00 61.70 O
ATOM 9 C3' G A 234 94.194 116.800 -7.977 1.00 60.35 C
ATOM 10 O3' G A 234 94.001 118.193 -7.803 1.00 61.34 O
ATOM 11 C2' G A 234 94.918 116.173 -6.792 1.00 60.00 C
ATOM 12 O2' G A 234 95.926 116.989 -6.235 1.00 58.16 O
ATOM 13 C1' G A 234 93.766 115.945 -5.815 1.00 61.18 C
ATOM 14 N9 G A 234 94.023 114.849 -4.884 1.00 62.43 N
ATOM 15 C8 G A 234 94.601 113.633 -5.172 1.00 62.57 C
ATOM 16 N7 G A 234 94.793 112.894 -4.114 1.00 63.92 N
ATOM 17 C5 G A 234 94.295 113.658 -3.066 1.00 64.17 C
ATOM 18 C6 G A 234 94.257 113.391 -1.671 1.00 64.34 C
ATOM 19 O6 G A 234 94.690 112.406 -1.062 1.00 63.34 O
ATOM 20 N1 G A 234 93.649 114.428 -0.970 1.00 64.46 N
ATOM 21 C2 G A 234 93.151 115.577 -1.533 1.00 63.72 C
ATOM 22 N2 G A 234 92.585 116.449 -0.688 1.00 63.48 N
ATOM 23 N3 G A 234 93.200 115.848 -2.827 1.00 62.97 N
ATOM 24 C4 G A 234 93.784 114.853 -3.529 1.00 62.94 C
ATOM 25 P A A 235 94.568 119.207 -8.909 1.00 60.10 P
ATOM 26 OP1 A A 235 94.128 118.691 -10.230 1.00 61.24 O
ATOM 27 OP2 A A 235 96.020 119.406 -8.643 1.00 58.40 O
ATOM 28 O5' A A 235 93.781 120.558 -8.621 1.00 58.09 O
TER
ATOM 1 O3' U B 251 96.731 118.945 6.925 1.00 48.38 O
ATOM 2 P G B 252 95.466 118.199 6.275 1.00 48.83 P
ATOM 3 OP1 G B 252 94.242 118.544 7.037 1.00 49.17 O
ATOM 4 OP2 G B 252 95.818 116.775 6.059 1.00 47.66 O
ATOM 5 O5' G B 252 95.345 118.890 4.853 1.00 49.45 O
ATOM 6 C5' G B 252 94.875 120.236 4.730 1.00 48.91 C
ATOM 7 C4' G B 252 93.821 120.295 3.664 1.00 49.30 C
ATOM 8 O4' G B 252 94.430 119.937 2.393 1.00 50.28 O
ATOM 9 C3' G B 252 92.676 119.314 3.876 1.00 49.15 C
ATOM 10 O3' G B 252 91.447 119.844 3.430 1.00 49.35 O
ATOM 11 C2' G B 252 93.106 118.081 3.084 1.00 49.75 C
ATOM 12 O2' G B 252 92.022 117.321 2.580 1.00 48.11 O
ATOM 13 C1' G B 252 93.947 118.677 1.953 1.00 49.54 C
ATOM 14 N9 G B 252 95.101 117.828 1.648 1.00 49.74 N
ATOM 15 C8 G B 252 95.883 117.142 2.551 1.00 48.50 C
ATOM 16 N7 G B 252 96.813 116.424 1.986 1.00 48.33 N
ATOM 17 C5 G B 252 96.650 116.653 0.626 1.00 50.01 C
ATOM 18 C6 G B 252 97.368 116.132 -0.494 1.00 50.56 C
ATOM 19 O6 G B 252 98.313 115.322 -0.506 1.00 49.36 O
ATOM 20 N1 G B 252 96.882 116.646 -1.692 1.00 50.64 N
ATOM 21 C2 G B 252 95.846 117.541 -1.807 1.00 50.23 C
ATOM 22 N2 G B 252 95.550 117.940 -3.051 1.00 50.18 N
ATOM 23 N3 G B 252 95.158 118.015 -0.780 1.00 50.32 N
ATOM 24 C4 G B 252 95.609 117.533 0.399 1.00 50.22 C
ATOM 25 P U B 253 90.134 119.608 4.318 1.00 48.29 P
ATOM 26 OP1 U B 253 90.447 120.145 5.662 1.00 49.65 O
ATOM 27 OP2 U B 253 89.725 118.190 4.174 1.00 47.68 O
ATOM 28 O5' U B 253 89.028 120.531 3.638 1.00 47.80 O
TER
ATOM 2 P G A 234 94.151 112.746 -9.561 1.00 62.42 P
ATOM 3 OP1 G A 234 94.476 113.130 -10.965 1.00 64.66 O
ATOM 4 OP2 G A 234 95.046 111.805 -8.830 1.00 59.26 O
ATOM 5 O5' G A 234 93.972 114.077 -8.714 1.00 59.27 O
ATOM 6 C5' G A 234 92.805 114.899 -8.900 1.00 59.95 C
ATOM 7 C4' G A 234 92.855 116.077 -7.970 1.00 60.78 C
ATOM 8 O4' G A 234 92.644 115.613 -6.606 1.00 61.70 O
ATOM 9 C3' G A 234 94.194 116.800 -7.977 1.00 60.35 C
ATOM 10 O3' G A 234 94.001 118.193 -7.803 1.00 61.34 O
ATOM 11 C2' G A 234 94.918 116.173 -6.792 1.00 60.00 C
ATOM 12 O2' G A 234 95.926 116.989 -6.235 1.00 58.16 O
ATOM 13 C1' G A 234 93.766 115.945 -5.815 1.00 61.18 C
ATOM 14 N9 G A 234 94.023 114.849 -4.884 1.00 62.43 N
ATOM 15 C8 G A 234 94.601 113.633 -5.172 1.00 62.57 C
ATOM 16 N7 G A 234 94.793 112.894 -4.114 1.00 63.92 N
ATOM 17 C5 G A 234 94.295 113.658 -3.066 1.00 64.17 C
ATOM 18 C6 G A 234 94.257 113.391 -1.671 1.00 64.34 C
ATOM 19 O6 G A 234 94.690 112.406 -1.062 1.00 63.34 O
ATOM 20 N1 G A 234 93.649 114.428 -0.970 1.00 64.46 N
ATOM 21 C2 G A 234 93.151 115.577 -1.533 1.00 63.72 C
ATOM 22 N2 G A 234 92.585 116.449 -0.688 1.00 63.48 N
ATOM 23 N3 G A 234 93.200 115.848 -2.827 1.00 62.97 N
ATOM 24 C4 G A 234 93.784 114.853 -3.529 1.00 62.94 C
ATOM 25 P A A 235 94.568 119.207 -8.909 1.00 60.10 P
ATOM 26 OP1 A A 235 94.128 118.691 -10.230 1.00 61.24 O
ATOM 27 OP2 A A 235 96.020 119.406 -8.643 1.00 58.40 O
ATOM 28 O5' A A 235 93.781 120.558 -8.621 1.00 58.09 O
TER
ATOM 1 O3' U B 251 96.731 118.945 6.925 1.00 48.38 O
ATOM 2 P G B 252 95.466 118.199 6.275 1.00 48.83 P
ATOM 3 OP1 G B 252 94.242 118.544 7.037 1.00 49.17 O
ATOM 4 OP2 G B 252 95.818 116.775 6.059 1.00 47.66 O
ATOM 5 O5' G B 252 95.345 118.890 4.853 1.00 49.45 O
ATOM 6 C5' G B 252 94.875 120.236 4.730 1.00 48.91 C
ATOM 7 C4' G B 252 93.821 120.295 3.664 1.00 49.30 C
ATOM 8 O4' G B 252 94.430 119.937 2.393 1.00 50.28 O
ATOM 9 C3' G B 252 92.676 119.314 3.876 1.00 49.15 C
ATOM 10 O3' G B 252 91.447 119.844 3.430 1.00 49.35 O
ATOM 11 C2' G B 252 93.106 118.081 3.084 1.00 49.75 C
ATOM 12 O2' G B 252 92.022 117.321 2.580 1.00 48.11 O
ATOM 13 C1' G B 252 93.947 118.677 1.953 1.00 49.54 C
ATOM 14 N9 G B 252 95.101 117.828 1.648 1.00 49.74 N
ATOM 15 C8 G B 252 95.883 117.142 2.551 1.00 48.50 C
ATOM 16 N7 G B 252 96.813 116.424 1.986 1.00 48.33 N
ATOM 17 C5 G B 252 96.650 116.653 0.626 1.00 50.01 C
ATOM 18 C6 G B 252 97.368 116.132 -0.494 1.00 50.56 C
ATOM 19 O6 G B 252 98.313 115.322 -0.506 1.00 49.36 O
ATOM 20 N1 G B 252 96.882 116.646 -1.692 1.00 50.64 N
ATOM 21 C2 G B 252 95.846 117.541 -1.807 1.00 50.23 C
ATOM 22 N2 G B 252 95.550 117.940 -3.051 1.00 50.18 N
ATOM 23 N3 G B 252 95.158 118.015 -0.780 1.00 50.32 N
ATOM 24 C4 G B 252 95.609 117.533 0.399 1.00 50.22 C
ATOM 25 P U B 253 90.134 119.608 4.318 1.00 48.29 P
ATOM 26 OP1 U B 253 90.447 120.145 5.662 1.00 49.65 O
ATOM 27 OP2 U B 253 89.725 118.190 4.174 1.00 47.68 O
ATOM 28 O5' U B 253 89.028 120.531 3.638 1.00 47.80 O
TER
Atoms:
OP1: (94.476,113.130,-10.965)
OP2: (95.046,111.805,-8.830)
C3': (94.194,116.800,-7.977)
C1': (93.766,115.945,-5.815)
C5': (92.805,114.899,-8.900)
O6: (94.690,112.406,-1.062)
O4': (92.644,115.613,-6.606)
C8: (94.601,113.633,-5.172)
C2: (93.151,115.577,-1.533)
C6: (94.257,113.391,-1.671)
C5: (94.295,113.658,-3.066)
C4: (93.784,114.853,-3.529)
P: (94.151,112.746,-9.561)
C4': (92.855,116.077,-7.970)
C2': (94.918,116.173,-6.792)
O2': (95.926,116.989,-6.235)
N1: (93.649,114.428,-0.970)
N2: (92.585,116.449,-0.688)
N3: (93.200,115.848,-2.827)
N7: (94.793,112.894,-4.114)
N9: (94.023,114.849,-4.884)
O5': (93.972,114.077,-8.714)
O3': (94.001,118.193,-7.803)
OP2: (95.046,111.805,-8.830)
C3': (94.194,116.800,-7.977)
C1': (93.766,115.945,-5.815)
C5': (92.805,114.899,-8.900)
O6: (94.690,112.406,-1.062)
O4': (92.644,115.613,-6.606)
C8: (94.601,113.633,-5.172)
C2: (93.151,115.577,-1.533)
C6: (94.257,113.391,-1.671)
C5: (94.295,113.658,-3.066)
C4: (93.784,114.853,-3.529)
P: (94.151,112.746,-9.561)
C4': (92.855,116.077,-7.970)
C2': (94.918,116.173,-6.792)
O2': (95.926,116.989,-6.235)
N1: (93.649,114.428,-0.970)
N2: (92.585,116.449,-0.688)
N3: (93.200,115.848,-2.827)
N7: (94.793,112.894,-4.114)
N9: (94.023,114.849,-4.884)
O5': (93.972,114.077,-8.714)
O3': (94.001,118.193,-7.803)
OP1: (94.242,118.544,7.037)
OP2: (95.818,116.775,6.059)
C3': (92.676,119.314,3.876)
C1': (93.947,118.677,1.953)
C5': (94.875,120.236,4.730)
O6: (98.313,115.322,-0.506)
O4': (94.430,119.937,2.393)
C8: (95.883,117.142,2.551)
C2: (95.846,117.541,-1.807)
C6: (97.368,116.132,-0.494)
C5: (96.650,116.653,0.626)
C4: (95.609,117.533,0.399)
P: (95.466,118.199,6.275)
C4': (93.821,120.295,3.664)
C2': (93.106,118.081,3.084)
O2': (92.022,117.321,2.580)
N1: (96.882,116.646,-1.692)
N2: (95.550,117.940,-3.051)
N3: (95.158,118.015,-0.780)
N7: (96.813,116.424,1.986)
N9: (95.101,117.828,1.648)
O5': (95.345,118.890,4.853)
O3': (91.447,119.844,3.430)
OP2: (95.818,116.775,6.059)
C3': (92.676,119.314,3.876)
C1': (93.947,118.677,1.953)
C5': (94.875,120.236,4.730)
O6: (98.313,115.322,-0.506)
O4': (94.430,119.937,2.393)
C8: (95.883,117.142,2.551)
C2: (95.846,117.541,-1.807)
C6: (97.368,116.132,-0.494)
C5: (96.650,116.653,0.626)
C4: (95.609,117.533,0.399)
P: (95.466,118.199,6.275)
C4': (93.821,120.295,3.664)
C2': (93.106,118.081,3.084)
O2': (92.022,117.321,2.580)
N1: (96.882,116.646,-1.692)
N2: (95.550,117.940,-3.051)
N3: (95.158,118.015,-0.780)
N7: (96.813,116.424,1.986)
N9: (95.101,117.828,1.648)
O5': (95.345,118.890,4.853)
O3': (91.447,119.844,3.430)
Image (generated by PyMOL):