Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0234:0252
Extra
PDB:
ATOM 1 O3' C A 233 92.720 111.881 -9.464 1.00 58.99 O
ATOM 2 P G A 234 94.212 112.466 -9.499 1.00 61.67 P
ATOM 3 OP1 G A 234 94.560 112.836 -10.901 1.00 62.63 O
ATOM 4 OP2 G A 234 95.071 111.498 -8.766 1.00 58.97 O
ATOM 5 O5' G A 234 94.062 113.800 -8.648 1.00 59.66 O
ATOM 6 C5' G A 234 92.924 114.660 -8.848 1.00 60.82 C
ATOM 7 C4' G A 234 92.997 115.840 -7.918 1.00 62.89 C
ATOM 8 O4' G A 234 92.757 115.389 -6.555 1.00 65.10 O
ATOM 9 C3' G A 234 94.350 116.540 -7.906 1.00 62.89 C
ATOM 10 O3' G A 234 94.178 117.939 -7.747 1.00 61.74 O
ATOM 11 C2' G A 234 95.047 115.904 -6.709 1.00 63.36 C
ATOM 12 O2' G A 234 96.055 116.708 -6.134 1.00 63.40 O
ATOM 13 C1' G A 234 93.877 115.694 -5.750 1.00 64.59 C
ATOM 14 N9 G A 234 94.100 114.586 -4.823 1.00 65.28 N
ATOM 15 C8 G A 234 94.613 113.342 -5.114 1.00 65.08 C
ATOM 16 N7 G A 234 94.780 112.597 -4.056 1.00 65.85 N
ATOM 17 C5 G A 234 94.336 113.390 -3.006 1.00 66.91 C
ATOM 18 C6 G A 234 94.300 113.133 -1.609 1.00 67.15 C
ATOM 19 O6 G A 234 94.695 112.136 -0.999 1.00 67.35 O
ATOM 20 N1 G A 234 93.745 114.200 -0.908 1.00 67.27 N
ATOM 21 C2 G A 234 93.297 115.369 -1.472 1.00 67.31 C
ATOM 22 N2 G A 234 92.768 116.270 -0.631 1.00 68.04 N
ATOM 23 N3 G A 234 93.355 115.633 -2.766 1.00 66.78 N
ATOM 24 C4 G A 234 93.882 114.607 -3.468 1.00 66.13 C
ATOM 25 P A A 235 94.784 118.936 -8.852 1.00 59.51 P
ATOM 26 OP1 A A 235 94.489 118.372 -10.190 1.00 61.07 O
ATOM 27 OP2 A A 235 96.190 119.225 -8.473 1.00 59.33 O
ATOM 28 O5' A A 235 93.932 120.265 -8.673 1.00 58.09 O
TER
ATOM 1 O3' U B 251 96.804 118.769 6.929 1.00 42.44 O
ATOM 2 P G B 252 95.555 117.996 6.286 1.00 43.96 P
ATOM 3 OP1 G B 252 94.318 118.322 7.033 1.00 44.98 O
ATOM 4 OP2 G B 252 95.930 116.580 6.069 1.00 43.66 O
ATOM 5 O5' G B 252 95.424 118.667 4.858 1.00 46.58 O
ATOM 6 C5' G B 252 94.950 120.009 4.723 1.00 47.44 C
ATOM 7 C4' G B 252 93.895 120.052 3.662 1.00 47.36 C
ATOM 8 O4' G B 252 94.513 119.672 2.403 1.00 48.44 O
ATOM 9 C3' G B 252 92.754 119.073 3.894 1.00 47.23 C
ATOM 10 O3' G B 252 91.519 119.591 3.443 1.00 47.25 O
ATOM 11 C2' G B 252 93.195 117.827 3.129 1.00 48.45 C
ATOM 12 O2' G B 252 92.124 117.049 2.629 1.00 47.67 O
ATOM 13 C1' G B 252 94.036 118.403 1.987 1.00 48.96 C
ATOM 14 N9 G B 252 95.194 117.552 1.696 1.00 49.30 N
ATOM 15 C8 G B 252 95.953 116.856 2.609 1.00 48.88 C
ATOM 16 N7 G B 252 96.895 116.144 2.058 1.00 49.42 N
ATOM 17 C5 G B 252 96.763 116.385 0.698 1.00 49.66 C
ATOM 18 C6 G B 252 97.505 115.873 -0.408 1.00 50.41 C
ATOM 19 O6 G B 252 98.446 115.058 -0.404 1.00 47.67 O
ATOM 20 N1 G B 252 97.048 116.398 -1.613 1.00 50.69 N
ATOM 21 C2 G B 252 96.013 117.289 -1.746 1.00 50.18 C
ATOM 22 N2 G B 252 95.741 117.690 -2.993 1.00 50.81 N
ATOM 23 N3 G B 252 95.301 117.756 -0.731 1.00 50.39 N
ATOM 24 C4 G B 252 95.728 117.267 0.455 1.00 49.94 C
ATOM 25 P U B 253 90.199 119.334 4.321 1.00 46.58 P
ATOM 26 OP1 U B 253 90.498 119.786 5.702 1.00 46.36 O
ATOM 27 OP2 U B 253 89.747 117.938 4.087 1.00 45.37 O
ATOM 28 O5' U B 253 89.110 120.304 3.686 1.00 46.89 O
TER
ATOM 2 P G A 234 94.212 112.466 -9.499 1.00 61.67 P
ATOM 3 OP1 G A 234 94.560 112.836 -10.901 1.00 62.63 O
ATOM 4 OP2 G A 234 95.071 111.498 -8.766 1.00 58.97 O
ATOM 5 O5' G A 234 94.062 113.800 -8.648 1.00 59.66 O
ATOM 6 C5' G A 234 92.924 114.660 -8.848 1.00 60.82 C
ATOM 7 C4' G A 234 92.997 115.840 -7.918 1.00 62.89 C
ATOM 8 O4' G A 234 92.757 115.389 -6.555 1.00 65.10 O
ATOM 9 C3' G A 234 94.350 116.540 -7.906 1.00 62.89 C
ATOM 10 O3' G A 234 94.178 117.939 -7.747 1.00 61.74 O
ATOM 11 C2' G A 234 95.047 115.904 -6.709 1.00 63.36 C
ATOM 12 O2' G A 234 96.055 116.708 -6.134 1.00 63.40 O
ATOM 13 C1' G A 234 93.877 115.694 -5.750 1.00 64.59 C
ATOM 14 N9 G A 234 94.100 114.586 -4.823 1.00 65.28 N
ATOM 15 C8 G A 234 94.613 113.342 -5.114 1.00 65.08 C
ATOM 16 N7 G A 234 94.780 112.597 -4.056 1.00 65.85 N
ATOM 17 C5 G A 234 94.336 113.390 -3.006 1.00 66.91 C
ATOM 18 C6 G A 234 94.300 113.133 -1.609 1.00 67.15 C
ATOM 19 O6 G A 234 94.695 112.136 -0.999 1.00 67.35 O
ATOM 20 N1 G A 234 93.745 114.200 -0.908 1.00 67.27 N
ATOM 21 C2 G A 234 93.297 115.369 -1.472 1.00 67.31 C
ATOM 22 N2 G A 234 92.768 116.270 -0.631 1.00 68.04 N
ATOM 23 N3 G A 234 93.355 115.633 -2.766 1.00 66.78 N
ATOM 24 C4 G A 234 93.882 114.607 -3.468 1.00 66.13 C
ATOM 25 P A A 235 94.784 118.936 -8.852 1.00 59.51 P
ATOM 26 OP1 A A 235 94.489 118.372 -10.190 1.00 61.07 O
ATOM 27 OP2 A A 235 96.190 119.225 -8.473 1.00 59.33 O
ATOM 28 O5' A A 235 93.932 120.265 -8.673 1.00 58.09 O
TER
ATOM 1 O3' U B 251 96.804 118.769 6.929 1.00 42.44 O
ATOM 2 P G B 252 95.555 117.996 6.286 1.00 43.96 P
ATOM 3 OP1 G B 252 94.318 118.322 7.033 1.00 44.98 O
ATOM 4 OP2 G B 252 95.930 116.580 6.069 1.00 43.66 O
ATOM 5 O5' G B 252 95.424 118.667 4.858 1.00 46.58 O
ATOM 6 C5' G B 252 94.950 120.009 4.723 1.00 47.44 C
ATOM 7 C4' G B 252 93.895 120.052 3.662 1.00 47.36 C
ATOM 8 O4' G B 252 94.513 119.672 2.403 1.00 48.44 O
ATOM 9 C3' G B 252 92.754 119.073 3.894 1.00 47.23 C
ATOM 10 O3' G B 252 91.519 119.591 3.443 1.00 47.25 O
ATOM 11 C2' G B 252 93.195 117.827 3.129 1.00 48.45 C
ATOM 12 O2' G B 252 92.124 117.049 2.629 1.00 47.67 O
ATOM 13 C1' G B 252 94.036 118.403 1.987 1.00 48.96 C
ATOM 14 N9 G B 252 95.194 117.552 1.696 1.00 49.30 N
ATOM 15 C8 G B 252 95.953 116.856 2.609 1.00 48.88 C
ATOM 16 N7 G B 252 96.895 116.144 2.058 1.00 49.42 N
ATOM 17 C5 G B 252 96.763 116.385 0.698 1.00 49.66 C
ATOM 18 C6 G B 252 97.505 115.873 -0.408 1.00 50.41 C
ATOM 19 O6 G B 252 98.446 115.058 -0.404 1.00 47.67 O
ATOM 20 N1 G B 252 97.048 116.398 -1.613 1.00 50.69 N
ATOM 21 C2 G B 252 96.013 117.289 -1.746 1.00 50.18 C
ATOM 22 N2 G B 252 95.741 117.690 -2.993 1.00 50.81 N
ATOM 23 N3 G B 252 95.301 117.756 -0.731 1.00 50.39 N
ATOM 24 C4 G B 252 95.728 117.267 0.455 1.00 49.94 C
ATOM 25 P U B 253 90.199 119.334 4.321 1.00 46.58 P
ATOM 26 OP1 U B 253 90.498 119.786 5.702 1.00 46.36 O
ATOM 27 OP2 U B 253 89.747 117.938 4.087 1.00 45.37 O
ATOM 28 O5' U B 253 89.110 120.304 3.686 1.00 46.89 O
TER
Atoms:
OP1: (94.560,112.836,-10.901)
OP2: (95.071,111.498,-8.766)
C3': (94.350,116.540,-7.906)
C1': (93.877,115.694,-5.750)
C5': (92.924,114.660,-8.848)
O6: (94.695,112.136,-0.999)
O4': (92.757,115.389,-6.555)
C8: (94.613,113.342,-5.114)
C2: (93.297,115.369,-1.472)
C6: (94.300,113.133,-1.609)
C5: (94.336,113.390,-3.006)
C4: (93.882,114.607,-3.468)
P: (94.212,112.466,-9.499)
C4': (92.997,115.840,-7.918)
C2': (95.047,115.904,-6.709)
O2': (96.055,116.708,-6.134)
N1: (93.745,114.200,-0.908)
N2: (92.768,116.270,-0.631)
N3: (93.355,115.633,-2.766)
N7: (94.780,112.597,-4.056)
N9: (94.100,114.586,-4.823)
O5': (94.062,113.800,-8.648)
O3': (94.178,117.939,-7.747)
OP2: (95.071,111.498,-8.766)
C3': (94.350,116.540,-7.906)
C1': (93.877,115.694,-5.750)
C5': (92.924,114.660,-8.848)
O6: (94.695,112.136,-0.999)
O4': (92.757,115.389,-6.555)
C8: (94.613,113.342,-5.114)
C2: (93.297,115.369,-1.472)
C6: (94.300,113.133,-1.609)
C5: (94.336,113.390,-3.006)
C4: (93.882,114.607,-3.468)
P: (94.212,112.466,-9.499)
C4': (92.997,115.840,-7.918)
C2': (95.047,115.904,-6.709)
O2': (96.055,116.708,-6.134)
N1: (93.745,114.200,-0.908)
N2: (92.768,116.270,-0.631)
N3: (93.355,115.633,-2.766)
N7: (94.780,112.597,-4.056)
N9: (94.100,114.586,-4.823)
O5': (94.062,113.800,-8.648)
O3': (94.178,117.939,-7.747)
OP1: (94.318,118.322,7.033)
OP2: (95.930,116.580,6.069)
C3': (92.754,119.073,3.894)
C1': (94.036,118.403,1.987)
C5': (94.950,120.009,4.723)
O6: (98.446,115.058,-0.404)
O4': (94.513,119.672,2.403)
C8: (95.953,116.856,2.609)
C2: (96.013,117.289,-1.746)
C6: (97.505,115.873,-0.408)
C5: (96.763,116.385,0.698)
C4: (95.728,117.267,0.455)
P: (95.555,117.996,6.286)
C4': (93.895,120.052,3.662)
C2': (93.195,117.827,3.129)
O2': (92.124,117.049,2.629)
N1: (97.048,116.398,-1.613)
N2: (95.741,117.690,-2.993)
N3: (95.301,117.756,-0.731)
N7: (96.895,116.144,2.058)
N9: (95.194,117.552,1.696)
O5': (95.424,118.667,4.858)
O3': (91.519,119.591,3.443)
OP2: (95.930,116.580,6.069)
C3': (92.754,119.073,3.894)
C1': (94.036,118.403,1.987)
C5': (94.950,120.009,4.723)
O6: (98.446,115.058,-0.404)
O4': (94.513,119.672,2.403)
C8: (95.953,116.856,2.609)
C2: (96.013,117.289,-1.746)
C6: (97.505,115.873,-0.408)
C5: (96.763,116.385,0.698)
C4: (95.728,117.267,0.455)
P: (95.555,117.996,6.286)
C4': (93.895,120.052,3.662)
C2': (93.195,117.827,3.129)
O2': (92.124,117.049,2.629)
N1: (97.048,116.398,-1.613)
N2: (95.741,117.690,-2.993)
N3: (95.301,117.756,-0.731)
N7: (96.895,116.144,2.058)
N9: (95.194,117.552,1.696)
O5': (95.424,118.667,4.858)
O3': (91.519,119.591,3.443)
Image (generated by PyMOL):