Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0234:0252
Extra
PDB:
ATOM 1 O3' C A 233 93.068 112.186 -9.358 1.00 75.19 O
ATOM 2 P G A 234 94.558 112.781 -9.401 1.00 78.09 P
ATOM 3 OP1 G A 234 94.868 113.181 -10.803 1.00 78.50 O
ATOM 4 OP2 G A 234 95.436 111.799 -8.707 1.00 76.79 O
ATOM 5 O5' G A 234 94.434 114.099 -8.519 1.00 77.03 O
ATOM 6 C5' G A 234 93.312 114.988 -8.696 1.00 76.70 C
ATOM 7 C4' G A 234 93.410 116.150 -7.744 1.00 77.13 C
ATOM 8 O4' G A 234 93.128 115.698 -6.390 1.00 77.44 O
ATOM 9 C3' G A 234 94.788 116.793 -7.704 1.00 77.66 C
ATOM 10 O3' G A 234 94.670 118.196 -7.522 1.00 77.40 O
ATOM 11 C2' G A 234 95.437 116.108 -6.507 1.00 78.03 C
ATOM 12 O2' G A 234 96.477 116.861 -5.917 1.00 78.92 O
ATOM 13 C1' G A 234 94.246 115.948 -5.564 1.00 78.17 C
ATOM 14 N9 G A 234 94.397 114.828 -4.637 1.00 79.15 N
ATOM 15 C8 G A 234 94.797 113.547 -4.940 1.00 79.66 C
ATOM 16 N7 G A 234 94.888 112.776 -3.891 1.00 80.10 N
ATOM 17 C5 G A 234 94.517 113.593 -2.830 1.00 81.02 C
ATOM 18 C6 G A 234 94.430 113.312 -1.440 1.00 81.98 C
ATOM 19 O6 G A 234 94.678 112.252 -0.850 1.00 83.18 O
ATOM 20 N1 G A 234 94.000 114.423 -0.720 1.00 81.94 N
ATOM 21 C2 G A 234 93.687 115.644 -1.263 1.00 81.44 C
ATOM 22 N2 G A 234 93.265 116.584 -0.402 1.00 81.83 N
ATOM 23 N3 G A 234 93.775 115.922 -2.555 1.00 80.97 N
ATOM 24 C4 G A 234 94.194 114.858 -3.275 1.00 80.22 C
ATOM 25 P A A 235 95.318 119.194 -8.607 1.00 76.83 P
ATOM 26 OP1 A A 235 95.107 118.614 -9.961 1.00 77.34 O
ATOM 27 OP2 A A 235 96.704 119.512 -8.154 1.00 76.01 O
ATOM 28 O5' A A 235 94.427 120.509 -8.491 1.00 74.14 O
TER
ATOM 1 O3' U B 251 97.136 119.003 7.153 1.00 64.35 O
ATOM 2 P G B 252 95.820 118.276 6.574 1.00 65.31 P
ATOM 3 OP1 G B 252 94.652 118.692 7.396 1.00 64.88 O
ATOM 4 OP2 G B 252 96.102 116.833 6.379 1.00 64.83 O
ATOM 5 O5' G B 252 95.640 118.918 5.135 1.00 65.25 O
ATOM 6 C5' G B 252 95.141 120.247 4.987 1.00 65.68 C
ATOM 7 C4' G B 252 94.103 120.273 3.904 1.00 65.52 C
ATOM 8 O4' G B 252 94.737 119.957 2.637 1.00 66.65 O
ATOM 9 C3' G B 252 92.982 119.262 4.082 1.00 65.31 C
ATOM 10 O3' G B 252 91.766 119.775 3.574 1.00 64.15 O
ATOM 11 C2' G B 252 93.478 118.047 3.303 1.00 67.06 C
ATOM 12 O2' G B 252 92.431 117.247 2.779 1.00 67.72 O
ATOM 13 C1' G B 252 94.310 118.682 2.184 1.00 67.47 C
ATOM 14 N9 G B 252 95.502 117.888 1.875 1.00 67.42 N
ATOM 15 C8 G B 252 96.317 117.246 2.777 1.00 67.40 C
ATOM 16 N7 G B 252 97.285 116.579 2.212 1.00 67.61 N
ATOM 17 C5 G B 252 97.107 116.793 0.854 1.00 67.28 C
ATOM 18 C6 G B 252 97.847 116.304 -0.257 1.00 67.46 C
ATOM 19 O6 G B 252 98.820 115.531 -0.262 1.00 66.70 O
ATOM 20 N1 G B 252 97.343 116.792 -1.458 1.00 66.79 N
ATOM 21 C2 G B 252 96.262 117.629 -1.580 1.00 65.58 C
ATOM 22 N2 G B 252 95.952 118.007 -2.827 1.00 64.95 N
ATOM 23 N3 G B 252 95.546 118.068 -0.557 1.00 66.22 N
ATOM 24 C4 G B 252 96.023 117.615 0.625 1.00 67.28 C
ATOM 25 P U B 253 90.472 119.779 4.515 1.00 61.71 P
ATOM 26 OP1 U B 253 90.883 120.410 5.789 1.00 62.79 O
ATOM 27 OP2 U B 253 89.887 118.419 4.526 1.00 63.01 O
ATOM 28 O5' U B 253 89.454 120.739 3.767 1.00 62.00 O
TER
ATOM 2 P G A 234 94.558 112.781 -9.401 1.00 78.09 P
ATOM 3 OP1 G A 234 94.868 113.181 -10.803 1.00 78.50 O
ATOM 4 OP2 G A 234 95.436 111.799 -8.707 1.00 76.79 O
ATOM 5 O5' G A 234 94.434 114.099 -8.519 1.00 77.03 O
ATOM 6 C5' G A 234 93.312 114.988 -8.696 1.00 76.70 C
ATOM 7 C4' G A 234 93.410 116.150 -7.744 1.00 77.13 C
ATOM 8 O4' G A 234 93.128 115.698 -6.390 1.00 77.44 O
ATOM 9 C3' G A 234 94.788 116.793 -7.704 1.00 77.66 C
ATOM 10 O3' G A 234 94.670 118.196 -7.522 1.00 77.40 O
ATOM 11 C2' G A 234 95.437 116.108 -6.507 1.00 78.03 C
ATOM 12 O2' G A 234 96.477 116.861 -5.917 1.00 78.92 O
ATOM 13 C1' G A 234 94.246 115.948 -5.564 1.00 78.17 C
ATOM 14 N9 G A 234 94.397 114.828 -4.637 1.00 79.15 N
ATOM 15 C8 G A 234 94.797 113.547 -4.940 1.00 79.66 C
ATOM 16 N7 G A 234 94.888 112.776 -3.891 1.00 80.10 N
ATOM 17 C5 G A 234 94.517 113.593 -2.830 1.00 81.02 C
ATOM 18 C6 G A 234 94.430 113.312 -1.440 1.00 81.98 C
ATOM 19 O6 G A 234 94.678 112.252 -0.850 1.00 83.18 O
ATOM 20 N1 G A 234 94.000 114.423 -0.720 1.00 81.94 N
ATOM 21 C2 G A 234 93.687 115.644 -1.263 1.00 81.44 C
ATOM 22 N2 G A 234 93.265 116.584 -0.402 1.00 81.83 N
ATOM 23 N3 G A 234 93.775 115.922 -2.555 1.00 80.97 N
ATOM 24 C4 G A 234 94.194 114.858 -3.275 1.00 80.22 C
ATOM 25 P A A 235 95.318 119.194 -8.607 1.00 76.83 P
ATOM 26 OP1 A A 235 95.107 118.614 -9.961 1.00 77.34 O
ATOM 27 OP2 A A 235 96.704 119.512 -8.154 1.00 76.01 O
ATOM 28 O5' A A 235 94.427 120.509 -8.491 1.00 74.14 O
TER
ATOM 1 O3' U B 251 97.136 119.003 7.153 1.00 64.35 O
ATOM 2 P G B 252 95.820 118.276 6.574 1.00 65.31 P
ATOM 3 OP1 G B 252 94.652 118.692 7.396 1.00 64.88 O
ATOM 4 OP2 G B 252 96.102 116.833 6.379 1.00 64.83 O
ATOM 5 O5' G B 252 95.640 118.918 5.135 1.00 65.25 O
ATOM 6 C5' G B 252 95.141 120.247 4.987 1.00 65.68 C
ATOM 7 C4' G B 252 94.103 120.273 3.904 1.00 65.52 C
ATOM 8 O4' G B 252 94.737 119.957 2.637 1.00 66.65 O
ATOM 9 C3' G B 252 92.982 119.262 4.082 1.00 65.31 C
ATOM 10 O3' G B 252 91.766 119.775 3.574 1.00 64.15 O
ATOM 11 C2' G B 252 93.478 118.047 3.303 1.00 67.06 C
ATOM 12 O2' G B 252 92.431 117.247 2.779 1.00 67.72 O
ATOM 13 C1' G B 252 94.310 118.682 2.184 1.00 67.47 C
ATOM 14 N9 G B 252 95.502 117.888 1.875 1.00 67.42 N
ATOM 15 C8 G B 252 96.317 117.246 2.777 1.00 67.40 C
ATOM 16 N7 G B 252 97.285 116.579 2.212 1.00 67.61 N
ATOM 17 C5 G B 252 97.107 116.793 0.854 1.00 67.28 C
ATOM 18 C6 G B 252 97.847 116.304 -0.257 1.00 67.46 C
ATOM 19 O6 G B 252 98.820 115.531 -0.262 1.00 66.70 O
ATOM 20 N1 G B 252 97.343 116.792 -1.458 1.00 66.79 N
ATOM 21 C2 G B 252 96.262 117.629 -1.580 1.00 65.58 C
ATOM 22 N2 G B 252 95.952 118.007 -2.827 1.00 64.95 N
ATOM 23 N3 G B 252 95.546 118.068 -0.557 1.00 66.22 N
ATOM 24 C4 G B 252 96.023 117.615 0.625 1.00 67.28 C
ATOM 25 P U B 253 90.472 119.779 4.515 1.00 61.71 P
ATOM 26 OP1 U B 253 90.883 120.410 5.789 1.00 62.79 O
ATOM 27 OP2 U B 253 89.887 118.419 4.526 1.00 63.01 O
ATOM 28 O5' U B 253 89.454 120.739 3.767 1.00 62.00 O
TER
Atoms:
OP1: (94.868,113.181,-10.803)
OP2: (95.436,111.799,-8.707)
C3': (94.788,116.793,-7.704)
C1': (94.246,115.948,-5.564)
C5': (93.312,114.988,-8.696)
O6: (94.678,112.252,-0.850)
O4': (93.128,115.698,-6.390)
C8: (94.797,113.547,-4.940)
C2: (93.687,115.644,-1.263)
C6: (94.430,113.312,-1.440)
C5: (94.517,113.593,-2.830)
C4: (94.194,114.858,-3.275)
P: (94.558,112.781,-9.401)
C4': (93.410,116.150,-7.744)
C2': (95.437,116.108,-6.507)
O2': (96.477,116.861,-5.917)
N1: (94.000,114.423,-0.720)
N2: (93.265,116.584,-0.402)
N3: (93.775,115.922,-2.555)
N7: (94.888,112.776,-3.891)
N9: (94.397,114.828,-4.637)
O5': (94.434,114.099,-8.519)
O3': (94.670,118.196,-7.522)
OP2: (95.436,111.799,-8.707)
C3': (94.788,116.793,-7.704)
C1': (94.246,115.948,-5.564)
C5': (93.312,114.988,-8.696)
O6: (94.678,112.252,-0.850)
O4': (93.128,115.698,-6.390)
C8: (94.797,113.547,-4.940)
C2: (93.687,115.644,-1.263)
C6: (94.430,113.312,-1.440)
C5: (94.517,113.593,-2.830)
C4: (94.194,114.858,-3.275)
P: (94.558,112.781,-9.401)
C4': (93.410,116.150,-7.744)
C2': (95.437,116.108,-6.507)
O2': (96.477,116.861,-5.917)
N1: (94.000,114.423,-0.720)
N2: (93.265,116.584,-0.402)
N3: (93.775,115.922,-2.555)
N7: (94.888,112.776,-3.891)
N9: (94.397,114.828,-4.637)
O5': (94.434,114.099,-8.519)
O3': (94.670,118.196,-7.522)
OP1: (94.652,118.692,7.396)
OP2: (96.102,116.833,6.379)
C3': (92.982,119.262,4.082)
C1': (94.310,118.682,2.184)
C5': (95.141,120.247,4.987)
O6: (98.820,115.531,-0.262)
O4': (94.737,119.957,2.637)
C8: (96.317,117.246,2.777)
C2: (96.262,117.629,-1.580)
C6: (97.847,116.304,-0.257)
C5: (97.107,116.793,0.854)
C4: (96.023,117.615,0.625)
P: (95.820,118.276,6.574)
C4': (94.103,120.273,3.904)
C2': (93.478,118.047,3.303)
O2': (92.431,117.247,2.779)
N1: (97.343,116.792,-1.458)
N2: (95.952,118.007,-2.827)
N3: (95.546,118.068,-0.557)
N7: (97.285,116.579,2.212)
N9: (95.502,117.888,1.875)
O5': (95.640,118.918,5.135)
O3': (91.766,119.775,3.574)
OP2: (96.102,116.833,6.379)
C3': (92.982,119.262,4.082)
C1': (94.310,118.682,2.184)
C5': (95.141,120.247,4.987)
O6: (98.820,115.531,-0.262)
O4': (94.737,119.957,2.637)
C8: (96.317,117.246,2.777)
C2: (96.262,117.629,-1.580)
C6: (97.847,116.304,-0.257)
C5: (97.107,116.793,0.854)
C4: (96.023,117.615,0.625)
P: (95.820,118.276,6.574)
C4': (94.103,120.273,3.904)
C2': (93.478,118.047,3.303)
O2': (92.431,117.247,2.779)
N1: (97.343,116.792,-1.458)
N2: (95.952,118.007,-2.827)
N3: (95.546,118.068,-0.557)
N7: (97.285,116.579,2.212)
N9: (95.502,117.888,1.875)
O5': (95.640,118.918,5.135)
O3': (91.766,119.775,3.574)
Image (generated by PyMOL):