Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0234:0252
Extra
PDB:
ATOM 1 O3' C A 233 92.698 112.039 -9.578 1.00 66.21 O
ATOM 2 P G A 234 94.194 112.618 -9.593 1.00 69.47 P
ATOM 3 OP1 G A 234 94.531 113.001 -10.992 1.00 69.93 O
ATOM 4 OP2 G A 234 95.059 111.642 -8.868 1.00 68.00 O
ATOM 5 O5' G A 234 94.064 113.939 -8.719 1.00 67.08 O
ATOM 6 C5' G A 234 92.936 114.811 -8.898 1.00 66.86 C
ATOM 7 C4' G A 234 93.032 115.982 -7.964 1.00 67.10 C
ATOM 8 O4' G A 234 92.784 115.530 -6.606 1.00 67.46 O
ATOM 9 C3' G A 234 94.392 116.665 -7.950 1.00 66.72 C
ATOM 10 O3' G A 234 94.228 118.064 -7.786 1.00 66.23 O
ATOM 11 C2' G A 234 95.075 116.028 -6.747 1.00 66.48 C
ATOM 12 O2' G A 234 96.082 116.844 -6.181 1.00 65.85 O
ATOM 13 C1' G A 234 93.896 115.832 -5.794 1.00 67.40 C
ATOM 14 N9 G A 234 94.089 114.728 -4.858 1.00 68.80 N
ATOM 15 C8 G A 234 94.570 113.471 -5.147 1.00 69.31 C
ATOM 16 N7 G A 234 94.701 112.716 -4.090 1.00 70.15 N
ATOM 17 C5 G A 234 94.267 113.517 -3.040 1.00 71.48 C
ATOM 18 C6 G A 234 94.196 113.248 -1.643 1.00 72.20 C
ATOM 19 O6 G A 234 94.531 112.223 -1.035 1.00 72.95 O
ATOM 20 N1 G A 234 93.677 114.331 -0.938 1.00 71.92 N
ATOM 21 C2 G A 234 93.280 115.520 -1.497 1.00 71.50 C
ATOM 22 N2 G A 234 92.788 116.433 -0.644 1.00 71.14 N
ATOM 23 N3 G A 234 93.358 115.792 -2.794 1.00 71.14 N
ATOM 24 C4 G A 234 93.859 114.753 -3.501 1.00 70.36 C
ATOM 25 P A A 235 94.725 119.056 -8.947 1.00 65.33 P
ATOM 26 OP1 A A 235 94.225 118.524 -10.242 1.00 65.43 O
ATOM 27 OP2 A A 235 96.187 119.272 -8.757 1.00 63.53 O
ATOM 28 O5' A A 235 93.930 120.402 -8.651 1.00 64.19 O
TER
ATOM 1 O3' U B 251 96.793 118.946 6.872 1.00 48.05 O
ATOM 2 P G B 252 95.544 118.164 6.238 1.00 48.17 P
ATOM 3 OP1 G B 252 94.304 118.491 6.981 1.00 47.94 O
ATOM 4 OP2 G B 252 95.946 116.753 6.069 1.00 48.50 O
ATOM 5 O5' G B 252 95.416 118.808 4.798 1.00 48.80 O
ATOM 6 C5' G B 252 94.986 120.161 4.647 1.00 50.67 C
ATOM 7 C4' G B 252 93.915 120.227 3.604 1.00 51.07 C
ATOM 8 O4' G B 252 94.503 119.881 2.323 1.00 51.60 O
ATOM 9 C3' G B 252 92.773 119.246 3.829 1.00 51.87 C
ATOM 10 O3' G B 252 91.541 119.773 3.379 1.00 52.84 O
ATOM 11 C2' G B 252 93.213 118.011 3.045 1.00 51.98 C
ATOM 12 O2' G B 252 92.142 117.228 2.550 1.00 51.59 O
ATOM 13 C1' G B 252 94.041 118.608 1.903 1.00 51.94 C
ATOM 14 N9 G B 252 95.206 117.773 1.607 1.00 51.29 N
ATOM 15 C8 G B 252 95.992 117.111 2.521 1.00 50.32 C
ATOM 16 N7 G B 252 96.922 116.385 1.969 1.00 50.59 N
ATOM 17 C5 G B 252 96.752 116.582 0.606 1.00 51.38 C
ATOM 18 C6 G B 252 97.457 116.025 -0.500 1.00 51.77 C
ATOM 19 O6 G B 252 98.384 115.196 -0.491 1.00 51.09 O
ATOM 20 N1 G B 252 96.974 116.515 -1.711 1.00 51.20 N
ATOM 21 C2 G B 252 95.944 117.413 -1.846 1.00 50.24 C
ATOM 22 N2 G B 252 95.644 117.778 -3.100 1.00 48.41 N
ATOM 23 N3 G B 252 95.261 117.917 -0.827 1.00 51.22 N
ATOM 24 C4 G B 252 95.716 117.460 0.363 1.00 51.43 C
ATOM 25 P U B 253 90.213 119.487 4.231 1.00 52.80 P
ATOM 26 OP1 U B 253 90.479 119.926 5.621 1.00 52.92 O
ATOM 27 OP2 U B 253 89.779 118.093 3.979 1.00 53.66 O
ATOM 28 O5' U B 253 89.135 120.454 3.576 1.00 53.27 O
TER
ATOM 2 P G A 234 94.194 112.618 -9.593 1.00 69.47 P
ATOM 3 OP1 G A 234 94.531 113.001 -10.992 1.00 69.93 O
ATOM 4 OP2 G A 234 95.059 111.642 -8.868 1.00 68.00 O
ATOM 5 O5' G A 234 94.064 113.939 -8.719 1.00 67.08 O
ATOM 6 C5' G A 234 92.936 114.811 -8.898 1.00 66.86 C
ATOM 7 C4' G A 234 93.032 115.982 -7.964 1.00 67.10 C
ATOM 8 O4' G A 234 92.784 115.530 -6.606 1.00 67.46 O
ATOM 9 C3' G A 234 94.392 116.665 -7.950 1.00 66.72 C
ATOM 10 O3' G A 234 94.228 118.064 -7.786 1.00 66.23 O
ATOM 11 C2' G A 234 95.075 116.028 -6.747 1.00 66.48 C
ATOM 12 O2' G A 234 96.082 116.844 -6.181 1.00 65.85 O
ATOM 13 C1' G A 234 93.896 115.832 -5.794 1.00 67.40 C
ATOM 14 N9 G A 234 94.089 114.728 -4.858 1.00 68.80 N
ATOM 15 C8 G A 234 94.570 113.471 -5.147 1.00 69.31 C
ATOM 16 N7 G A 234 94.701 112.716 -4.090 1.00 70.15 N
ATOM 17 C5 G A 234 94.267 113.517 -3.040 1.00 71.48 C
ATOM 18 C6 G A 234 94.196 113.248 -1.643 1.00 72.20 C
ATOM 19 O6 G A 234 94.531 112.223 -1.035 1.00 72.95 O
ATOM 20 N1 G A 234 93.677 114.331 -0.938 1.00 71.92 N
ATOM 21 C2 G A 234 93.280 115.520 -1.497 1.00 71.50 C
ATOM 22 N2 G A 234 92.788 116.433 -0.644 1.00 71.14 N
ATOM 23 N3 G A 234 93.358 115.792 -2.794 1.00 71.14 N
ATOM 24 C4 G A 234 93.859 114.753 -3.501 1.00 70.36 C
ATOM 25 P A A 235 94.725 119.056 -8.947 1.00 65.33 P
ATOM 26 OP1 A A 235 94.225 118.524 -10.242 1.00 65.43 O
ATOM 27 OP2 A A 235 96.187 119.272 -8.757 1.00 63.53 O
ATOM 28 O5' A A 235 93.930 120.402 -8.651 1.00 64.19 O
TER
ATOM 1 O3' U B 251 96.793 118.946 6.872 1.00 48.05 O
ATOM 2 P G B 252 95.544 118.164 6.238 1.00 48.17 P
ATOM 3 OP1 G B 252 94.304 118.491 6.981 1.00 47.94 O
ATOM 4 OP2 G B 252 95.946 116.753 6.069 1.00 48.50 O
ATOM 5 O5' G B 252 95.416 118.808 4.798 1.00 48.80 O
ATOM 6 C5' G B 252 94.986 120.161 4.647 1.00 50.67 C
ATOM 7 C4' G B 252 93.915 120.227 3.604 1.00 51.07 C
ATOM 8 O4' G B 252 94.503 119.881 2.323 1.00 51.60 O
ATOM 9 C3' G B 252 92.773 119.246 3.829 1.00 51.87 C
ATOM 10 O3' G B 252 91.541 119.773 3.379 1.00 52.84 O
ATOM 11 C2' G B 252 93.213 118.011 3.045 1.00 51.98 C
ATOM 12 O2' G B 252 92.142 117.228 2.550 1.00 51.59 O
ATOM 13 C1' G B 252 94.041 118.608 1.903 1.00 51.94 C
ATOM 14 N9 G B 252 95.206 117.773 1.607 1.00 51.29 N
ATOM 15 C8 G B 252 95.992 117.111 2.521 1.00 50.32 C
ATOM 16 N7 G B 252 96.922 116.385 1.969 1.00 50.59 N
ATOM 17 C5 G B 252 96.752 116.582 0.606 1.00 51.38 C
ATOM 18 C6 G B 252 97.457 116.025 -0.500 1.00 51.77 C
ATOM 19 O6 G B 252 98.384 115.196 -0.491 1.00 51.09 O
ATOM 20 N1 G B 252 96.974 116.515 -1.711 1.00 51.20 N
ATOM 21 C2 G B 252 95.944 117.413 -1.846 1.00 50.24 C
ATOM 22 N2 G B 252 95.644 117.778 -3.100 1.00 48.41 N
ATOM 23 N3 G B 252 95.261 117.917 -0.827 1.00 51.22 N
ATOM 24 C4 G B 252 95.716 117.460 0.363 1.00 51.43 C
ATOM 25 P U B 253 90.213 119.487 4.231 1.00 52.80 P
ATOM 26 OP1 U B 253 90.479 119.926 5.621 1.00 52.92 O
ATOM 27 OP2 U B 253 89.779 118.093 3.979 1.00 53.66 O
ATOM 28 O5' U B 253 89.135 120.454 3.576 1.00 53.27 O
TER
Atoms:
OP1: (94.531,113.001,-10.992)
OP2: (95.059,111.642,-8.868)
C3': (94.392,116.665,-7.950)
C1': (93.896,115.832,-5.794)
C5': (92.936,114.811,-8.898)
O6: (94.531,112.223,-1.035)
O4': (92.784,115.530,-6.606)
C8: (94.570,113.471,-5.147)
C2: (93.280,115.520,-1.497)
C6: (94.196,113.248,-1.643)
C5: (94.267,113.517,-3.040)
C4: (93.859,114.753,-3.501)
P: (94.194,112.618,-9.593)
C4': (93.032,115.982,-7.964)
C2': (95.075,116.028,-6.747)
O2': (96.082,116.844,-6.181)
N1: (93.677,114.331,-0.938)
N2: (92.788,116.433,-0.644)
N3: (93.358,115.792,-2.794)
N7: (94.701,112.716,-4.090)
N9: (94.089,114.728,-4.858)
O5': (94.064,113.939,-8.719)
O3': (94.228,118.064,-7.786)
OP2: (95.059,111.642,-8.868)
C3': (94.392,116.665,-7.950)
C1': (93.896,115.832,-5.794)
C5': (92.936,114.811,-8.898)
O6: (94.531,112.223,-1.035)
O4': (92.784,115.530,-6.606)
C8: (94.570,113.471,-5.147)
C2: (93.280,115.520,-1.497)
C6: (94.196,113.248,-1.643)
C5: (94.267,113.517,-3.040)
C4: (93.859,114.753,-3.501)
P: (94.194,112.618,-9.593)
C4': (93.032,115.982,-7.964)
C2': (95.075,116.028,-6.747)
O2': (96.082,116.844,-6.181)
N1: (93.677,114.331,-0.938)
N2: (92.788,116.433,-0.644)
N3: (93.358,115.792,-2.794)
N7: (94.701,112.716,-4.090)
N9: (94.089,114.728,-4.858)
O5': (94.064,113.939,-8.719)
O3': (94.228,118.064,-7.786)
OP1: (94.304,118.491,6.981)
OP2: (95.946,116.753,6.069)
C3': (92.773,119.246,3.829)
C1': (94.041,118.608,1.903)
C5': (94.986,120.161,4.647)
O6: (98.384,115.196,-0.491)
O4': (94.503,119.881,2.323)
C8: (95.992,117.111,2.521)
C2: (95.944,117.413,-1.846)
C6: (97.457,116.025,-0.500)
C5: (96.752,116.582,0.606)
C4: (95.716,117.460,0.363)
P: (95.544,118.164,6.238)
C4': (93.915,120.227,3.604)
C2': (93.213,118.011,3.045)
O2': (92.142,117.228,2.550)
N1: (96.974,116.515,-1.711)
N2: (95.644,117.778,-3.100)
N3: (95.261,117.917,-0.827)
N7: (96.922,116.385,1.969)
N9: (95.206,117.773,1.607)
O5': (95.416,118.808,4.798)
O3': (91.541,119.773,3.379)
OP2: (95.946,116.753,6.069)
C3': (92.773,119.246,3.829)
C1': (94.041,118.608,1.903)
C5': (94.986,120.161,4.647)
O6: (98.384,115.196,-0.491)
O4': (94.503,119.881,2.323)
C8: (95.992,117.111,2.521)
C2: (95.944,117.413,-1.846)
C6: (97.457,116.025,-0.500)
C5: (96.752,116.582,0.606)
C4: (95.716,117.460,0.363)
P: (95.544,118.164,6.238)
C4': (93.915,120.227,3.604)
C2': (93.213,118.011,3.045)
O2': (92.142,117.228,2.550)
N1: (96.974,116.515,-1.711)
N2: (95.644,117.778,-3.100)
N3: (95.261,117.917,-0.827)
N7: (96.922,116.385,1.969)
N9: (95.206,117.773,1.607)
O5': (95.416,118.808,4.798)
O3': (91.541,119.773,3.379)
Image (generated by PyMOL):