Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X62:X9
Extra
PDB:
ATOM 1 O3' U A 61 -18.057 -15.736 10.753 1.00 32.25 O
ATOM 2 P G A 62 -19.327 -16.286 9.955 1.00 31.76 P
ATOM 3 OP1 G A 62 -20.480 -15.470 10.397 1.00 32.26 O
ATOM 4 OP2 G A 62 -19.382 -17.759 10.068 1.00 32.19 O
ATOM 5 O5' G A 62 -18.979 -15.914 8.441 1.00 32.08 O
ATOM 6 C5' G A 62 -19.735 -16.459 7.372 1.00 31.66 C
ATOM 7 C4' G A 62 -19.638 -15.563 6.153 1.00 32.62 C
ATOM 8 O4' G A 62 -20.389 -14.339 6.371 1.00 32.88 O
ATOM 9 C3' G A 62 -18.241 -15.047 5.853 1.00 32.86 C
ATOM 10 O3' G A 62 -17.457 -16.024 5.195 1.00 33.89 O
ATOM 11 C2' G A 62 -18.575 -13.899 4.917 1.00 32.85 C
ATOM 12 O2' G A 62 -18.932 -14.367 3.629 1.00 32.65 O
ATOM 13 C1' G A 62 -19.771 -13.288 5.645 1.00 33.49 C
ATOM 14 N9 G A 62 -19.371 -12.205 6.545 1.00 34.78 N
ATOM 15 C8 G A 62 -19.107 -12.258 7.897 1.00 34.91 C
ATOM 16 N7 G A 62 -18.752 -11.104 8.403 1.00 35.64 N
ATOM 17 C5 G A 62 -18.786 -10.231 7.320 1.00 34.62 C
ATOM 18 C6 G A 62 -18.507 -8.842 7.236 1.00 34.69 C
ATOM 19 O6 G A 62 -18.157 -8.068 8.137 1.00 35.27 O
ATOM 20 N1 G A 62 -18.658 -8.356 5.937 1.00 34.38 N
ATOM 21 C2 G A 62 -19.033 -9.117 4.854 1.00 34.43 C
ATOM 22 N2 G A 62 -19.130 -8.490 3.673 1.00 35.22 N
ATOM 23 N3 G A 62 -19.305 -10.411 4.922 1.00 34.57 N
ATOM 24 C4 G A 62 -19.158 -10.899 6.176 1.00 34.10 C
ATOM 25 P C A 63 -15.886 -15.779 4.999 1.00 33.13 P
ATOM 26 OP1 C A 63 -15.294 -15.512 6.328 1.00 35.23 O
ATOM 27 OP2 C A 63 -15.688 -14.820 3.895 1.00 32.87 O
ATOM 28 O5' C A 63 -15.441 -17.229 4.507 1.00 33.27 O
TER
ATOM 1 O3' G B 8 -21.763 -2.592 -1.239 1.00 34.88 O
ATOM 2 P G B 9 -21.152 -2.109 0.155 1.00 35.04 P
ATOM 3 OP1 G B 9 -22.240 -2.167 1.149 1.00 34.57 O
ATOM 4 OP2 G B 9 -20.402 -0.852 -0.061 1.00 35.48 O
ATOM 5 O5' G B 9 -20.078 -3.247 0.480 1.00 33.44 O
ATOM 6 C5' G B 9 -20.484 -4.593 0.699 1.00 33.07 C
ATOM 7 C4' G B 9 -19.267 -5.499 0.698 1.00 32.33 C
ATOM 8 O4' G B 9 -18.648 -5.461 -0.610 1.00 31.80 O
ATOM 9 C3' G B 9 -18.159 -5.095 1.658 1.00 31.86 C
ATOM 10 O3' G B 9 -18.409 -5.648 2.944 1.00 31.78 O
ATOM 11 C2' G B 9 -16.936 -5.716 0.992 1.00 31.74 C
ATOM 12 O2' G B 9 -16.856 -7.109 1.231 1.00 32.06 O
ATOM 13 C1' G B 9 -17.238 -5.478 -0.484 1.00 31.54 C
ATOM 14 N9 G B 9 -16.737 -4.229 -1.059 1.00 30.37 N
ATOM 15 C8 G B 9 -17.283 -2.976 -0.913 1.00 30.07 C
ATOM 16 N7 G B 9 -16.642 -2.050 -1.570 1.00 30.50 N
ATOM 17 C5 G B 9 -15.610 -2.737 -2.198 1.00 30.03 C
ATOM 18 C6 G B 9 -14.584 -2.261 -3.048 1.00 29.79 C
ATOM 19 O6 G B 9 -14.381 -1.101 -3.428 1.00 28.24 O
ATOM 20 N1 G B 9 -13.745 -3.289 -3.474 1.00 29.32 N
ATOM 21 C2 G B 9 -13.869 -4.611 -3.118 1.00 29.29 C
ATOM 22 N2 G B 9 -12.960 -5.460 -3.638 1.00 27.53 N
ATOM 23 N3 G B 9 -14.825 -5.068 -2.319 1.00 29.24 N
ATOM 24 C4 G B 9 -15.659 -4.080 -1.901 1.00 30.11 C
ATOM 25 P U B 10 -18.045 -4.834 4.275 1.00 32.61 P
ATOM 26 OP1 U B 10 -18.561 -5.613 5.423 1.00 31.72 O
ATOM 27 OP2 U B 10 -18.420 -3.414 4.101 1.00 32.52 O
ATOM 28 O5' U B 10 -16.454 -4.897 4.286 1.00 32.18 O
TER
ATOM 2 P G A 62 -19.327 -16.286 9.955 1.00 31.76 P
ATOM 3 OP1 G A 62 -20.480 -15.470 10.397 1.00 32.26 O
ATOM 4 OP2 G A 62 -19.382 -17.759 10.068 1.00 32.19 O
ATOM 5 O5' G A 62 -18.979 -15.914 8.441 1.00 32.08 O
ATOM 6 C5' G A 62 -19.735 -16.459 7.372 1.00 31.66 C
ATOM 7 C4' G A 62 -19.638 -15.563 6.153 1.00 32.62 C
ATOM 8 O4' G A 62 -20.389 -14.339 6.371 1.00 32.88 O
ATOM 9 C3' G A 62 -18.241 -15.047 5.853 1.00 32.86 C
ATOM 10 O3' G A 62 -17.457 -16.024 5.195 1.00 33.89 O
ATOM 11 C2' G A 62 -18.575 -13.899 4.917 1.00 32.85 C
ATOM 12 O2' G A 62 -18.932 -14.367 3.629 1.00 32.65 O
ATOM 13 C1' G A 62 -19.771 -13.288 5.645 1.00 33.49 C
ATOM 14 N9 G A 62 -19.371 -12.205 6.545 1.00 34.78 N
ATOM 15 C8 G A 62 -19.107 -12.258 7.897 1.00 34.91 C
ATOM 16 N7 G A 62 -18.752 -11.104 8.403 1.00 35.64 N
ATOM 17 C5 G A 62 -18.786 -10.231 7.320 1.00 34.62 C
ATOM 18 C6 G A 62 -18.507 -8.842 7.236 1.00 34.69 C
ATOM 19 O6 G A 62 -18.157 -8.068 8.137 1.00 35.27 O
ATOM 20 N1 G A 62 -18.658 -8.356 5.937 1.00 34.38 N
ATOM 21 C2 G A 62 -19.033 -9.117 4.854 1.00 34.43 C
ATOM 22 N2 G A 62 -19.130 -8.490 3.673 1.00 35.22 N
ATOM 23 N3 G A 62 -19.305 -10.411 4.922 1.00 34.57 N
ATOM 24 C4 G A 62 -19.158 -10.899 6.176 1.00 34.10 C
ATOM 25 P C A 63 -15.886 -15.779 4.999 1.00 33.13 P
ATOM 26 OP1 C A 63 -15.294 -15.512 6.328 1.00 35.23 O
ATOM 27 OP2 C A 63 -15.688 -14.820 3.895 1.00 32.87 O
ATOM 28 O5' C A 63 -15.441 -17.229 4.507 1.00 33.27 O
TER
ATOM 1 O3' G B 8 -21.763 -2.592 -1.239 1.00 34.88 O
ATOM 2 P G B 9 -21.152 -2.109 0.155 1.00 35.04 P
ATOM 3 OP1 G B 9 -22.240 -2.167 1.149 1.00 34.57 O
ATOM 4 OP2 G B 9 -20.402 -0.852 -0.061 1.00 35.48 O
ATOM 5 O5' G B 9 -20.078 -3.247 0.480 1.00 33.44 O
ATOM 6 C5' G B 9 -20.484 -4.593 0.699 1.00 33.07 C
ATOM 7 C4' G B 9 -19.267 -5.499 0.698 1.00 32.33 C
ATOM 8 O4' G B 9 -18.648 -5.461 -0.610 1.00 31.80 O
ATOM 9 C3' G B 9 -18.159 -5.095 1.658 1.00 31.86 C
ATOM 10 O3' G B 9 -18.409 -5.648 2.944 1.00 31.78 O
ATOM 11 C2' G B 9 -16.936 -5.716 0.992 1.00 31.74 C
ATOM 12 O2' G B 9 -16.856 -7.109 1.231 1.00 32.06 O
ATOM 13 C1' G B 9 -17.238 -5.478 -0.484 1.00 31.54 C
ATOM 14 N9 G B 9 -16.737 -4.229 -1.059 1.00 30.37 N
ATOM 15 C8 G B 9 -17.283 -2.976 -0.913 1.00 30.07 C
ATOM 16 N7 G B 9 -16.642 -2.050 -1.570 1.00 30.50 N
ATOM 17 C5 G B 9 -15.610 -2.737 -2.198 1.00 30.03 C
ATOM 18 C6 G B 9 -14.584 -2.261 -3.048 1.00 29.79 C
ATOM 19 O6 G B 9 -14.381 -1.101 -3.428 1.00 28.24 O
ATOM 20 N1 G B 9 -13.745 -3.289 -3.474 1.00 29.32 N
ATOM 21 C2 G B 9 -13.869 -4.611 -3.118 1.00 29.29 C
ATOM 22 N2 G B 9 -12.960 -5.460 -3.638 1.00 27.53 N
ATOM 23 N3 G B 9 -14.825 -5.068 -2.319 1.00 29.24 N
ATOM 24 C4 G B 9 -15.659 -4.080 -1.901 1.00 30.11 C
ATOM 25 P U B 10 -18.045 -4.834 4.275 1.00 32.61 P
ATOM 26 OP1 U B 10 -18.561 -5.613 5.423 1.00 31.72 O
ATOM 27 OP2 U B 10 -18.420 -3.414 4.101 1.00 32.52 O
ATOM 28 O5' U B 10 -16.454 -4.897 4.286 1.00 32.18 O
TER
Atoms:
OP1: (-20.480,-15.470,10.397)
OP2: (-19.382,-17.759,10.068)
C3': (-18.241,-15.047,5.853)
C1': (-19.771,-13.288,5.645)
C5': (-19.735,-16.459,7.372)
O6: (-18.157,-8.068,8.137)
O4': (-20.389,-14.339,6.371)
C8: (-19.107,-12.258,7.897)
C2: (-19.033,-9.117,4.854)
C6: (-18.507,-8.842,7.236)
C5: (-18.786,-10.231,7.320)
C4: (-19.158,-10.899,6.176)
P: (-19.327,-16.286,9.955)
C4': (-19.638,-15.563,6.153)
C2': (-18.575,-13.899,4.917)
O2': (-18.932,-14.367,3.629)
N1: (-18.658,-8.356,5.937)
N2: (-19.130,-8.490,3.673)
N3: (-19.305,-10.411,4.922)
N7: (-18.752,-11.104,8.403)
N9: (-19.371,-12.205,6.545)
O5': (-18.979,-15.914,8.441)
O3': (-17.457,-16.024,5.195)
OP2: (-19.382,-17.759,10.068)
C3': (-18.241,-15.047,5.853)
C1': (-19.771,-13.288,5.645)
C5': (-19.735,-16.459,7.372)
O6: (-18.157,-8.068,8.137)
O4': (-20.389,-14.339,6.371)
C8: (-19.107,-12.258,7.897)
C2: (-19.033,-9.117,4.854)
C6: (-18.507,-8.842,7.236)
C5: (-18.786,-10.231,7.320)
C4: (-19.158,-10.899,6.176)
P: (-19.327,-16.286,9.955)
C4': (-19.638,-15.563,6.153)
C2': (-18.575,-13.899,4.917)
O2': (-18.932,-14.367,3.629)
N1: (-18.658,-8.356,5.937)
N2: (-19.130,-8.490,3.673)
N3: (-19.305,-10.411,4.922)
N7: (-18.752,-11.104,8.403)
N9: (-19.371,-12.205,6.545)
O5': (-18.979,-15.914,8.441)
O3': (-17.457,-16.024,5.195)
OP1: (-22.240,-2.167,1.149)
OP2: (-20.402,-0.852,-0.061)
C3': (-18.159,-5.095,1.658)
C1': (-17.238,-5.478,-0.484)
C5': (-20.484,-4.593,0.699)
O6: (-14.381,-1.101,-3.428)
O4': (-18.648,-5.461,-0.610)
C8: (-17.283,-2.976,-0.913)
C2: (-13.869,-4.611,-3.118)
C6: (-14.584,-2.261,-3.048)
C5: (-15.610,-2.737,-2.198)
C4: (-15.659,-4.080,-1.901)
P: (-21.152,-2.109,0.155)
C4': (-19.267,-5.499,0.698)
C2': (-16.936,-5.716,0.992)
O2': (-16.856,-7.109,1.231)
N1: (-13.745,-3.289,-3.474)
N2: (-12.960,-5.460,-3.638)
N3: (-14.825,-5.068,-2.319)
N7: (-16.642,-2.050,-1.570)
N9: (-16.737,-4.229,-1.059)
O5': (-20.078,-3.247,0.480)
O3': (-18.409,-5.648,2.944)
OP2: (-20.402,-0.852,-0.061)
C3': (-18.159,-5.095,1.658)
C1': (-17.238,-5.478,-0.484)
C5': (-20.484,-4.593,0.699)
O6: (-14.381,-1.101,-3.428)
O4': (-18.648,-5.461,-0.610)
C8: (-17.283,-2.976,-0.913)
C2: (-13.869,-4.611,-3.118)
C6: (-14.584,-2.261,-3.048)
C5: (-15.610,-2.737,-2.198)
C4: (-15.659,-4.080,-1.901)
P: (-21.152,-2.109,0.155)
C4': (-19.267,-5.499,0.698)
C2': (-16.936,-5.716,0.992)
O2': (-16.856,-7.109,1.231)
N1: (-13.745,-3.289,-3.474)
N2: (-12.960,-5.460,-3.638)
N3: (-14.825,-5.068,-2.319)
N7: (-16.642,-2.050,-1.570)
N9: (-16.737,-4.229,-1.059)
O5': (-20.078,-3.247,0.480)
O3': (-18.409,-5.648,2.944)
Image (generated by PyMOL):