Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A23:A66
Extra
PDB:
ATOM 1 O3' A A 22 -13.111 4.204 25.279 1.00 25.77 O
ATOM 2 P G A 23 -12.010 3.173 25.835 1.00 31.03 P
ATOM 3 OP1 G A 23 -12.731 2.166 26.653 1.00 33.83 O
ATOM 4 OP2 G A 23 -10.941 3.976 26.474 1.00 22.82 O
ATOM 5 O5' G A 23 -11.454 2.492 24.506 1.00 25.90 O
ATOM 6 C5' G A 23 -12.189 1.472 23.847 1.00 24.57 C
ATOM 7 C4' G A 23 -11.521 1.046 22.562 1.00 25.58 C
ATOM 8 O4' G A 23 -11.342 2.198 21.690 1.00 28.39 O
ATOM 9 C3' G A 23 -10.117 0.478 22.689 1.00 23.92 C
ATOM 10 O3' G A 23 -10.089 -0.870 23.115 1.00 23.34 O
ATOM 11 C2' G A 23 -9.567 0.686 21.291 1.00 23.04 C
ATOM 12 O2' G A 23 -10.139 -0.247 20.387 1.00 22.89 O
ATOM 13 C1' G A 23 -10.127 2.069 20.976 1.00 23.65 C
ATOM 14 N9 G A 23 -9.208 3.127 21.428 1.00 23.18 N
ATOM 15 C8 G A 23 -9.274 3.832 22.603 1.00 22.72 C
ATOM 16 N7 G A 23 -8.299 4.686 22.739 1.00 23.21 N
ATOM 17 C5 G A 23 -7.539 4.527 21.590 1.00 24.98 C
ATOM 18 C6 G A 23 -6.354 5.184 21.176 1.00 23.69 C
ATOM 19 O6 G A 23 -5.717 6.067 21.762 1.00 24.97 O
ATOM 20 N1 G A 23 -5.917 4.713 19.944 1.00 22.23 N
ATOM 21 C2 G A 23 -6.533 3.737 19.201 1.00 22.79 C
ATOM 22 N2 G A 23 -5.950 3.427 18.033 1.00 20.70 N
ATOM 23 N3 G A 23 -7.641 3.118 19.575 1.00 22.40 N
ATOM 24 C4 G A 23 -8.083 3.560 20.772 1.00 23.83 C
ATOM 25 P U A 24 -8.882 -1.392 24.038 1.00 27.35 P
ATOM 26 OP1 U A 24 -9.041 -2.861 24.173 1.00 30.07 O
ATOM 27 OP2 U A 24 -8.881 -0.556 25.264 1.00 25.30 O
ATOM 28 O5' U A 24 -7.591 -1.062 23.164 1.00 26.85 O
TER
ATOM 1 O3' C B 65 -1.867 7.748 11.026 1.00 21.24 O
ATOM 2 P G B 66 -1.615 6.297 11.665 1.00 22.90 P
ATOM 3 OP1 G B 66 -0.263 6.317 12.273 1.00 18.42 O
ATOM 4 OP2 G B 66 -1.908 5.298 10.612 1.00 15.60 O
ATOM 5 O5' G B 66 -2.722 6.217 12.805 1.00 20.60 O
ATOM 6 C5' G B 66 -2.695 7.105 13.919 1.00 21.02 C
ATOM 7 C4' G B 66 -3.628 6.643 15.011 1.00 21.72 C
ATOM 8 O4' G B 66 -4.979 6.569 14.475 1.00 19.97 O
ATOM 9 C3' G B 66 -3.321 5.255 15.574 1.00 19.88 C
ATOM 10 O3' G B 66 -3.703 5.202 16.949 1.00 22.00 O
ATOM 11 C2' G B 66 -4.247 4.361 14.759 1.00 18.62 C
ATOM 12 O2' G B 66 -4.562 3.128 15.370 1.00 21.07 O
ATOM 13 C1' G B 66 -5.474 5.251 14.615 1.00 20.51 C
ATOM 14 N9 G B 66 -6.302 4.938 13.448 1.00 20.89 N
ATOM 15 C8 G B 66 -5.928 4.916 12.127 1.00 21.64 C
ATOM 16 N7 G B 66 -6.901 4.577 11.324 1.00 20.24 N
ATOM 17 C5 G B 66 -7.979 4.354 12.168 1.00 21.39 C
ATOM 18 C6 G B 66 -9.310 3.962 11.880 1.00 23.95 C
ATOM 19 O6 G B 66 -9.825 3.721 10.780 1.00 23.50 O
ATOM 20 N1 G B 66 -10.070 3.860 13.041 1.00 22.14 N
ATOM 21 C2 G B 66 -9.614 4.097 14.313 1.00 22.36 C
ATOM 22 N2 G B 66 -10.501 3.940 15.306 1.00 24.56 N
ATOM 23 N3 G B 66 -8.377 4.462 14.594 1.00 20.85 N
ATOM 24 C4 G B 66 -7.623 4.569 13.482 1.00 21.90 C
ATOM 25 P G B 67 -2.595 5.342 18.107 1.00 26.32 P
ATOM 26 OP1 G B 67 -3.298 5.197 19.403 1.00 28.16 O
ATOM 27 OP2 G B 67 -1.840 6.592 17.845 1.00 25.47 O
ATOM 28 O5' G B 67 -1.656 4.081 17.855 1.00 19.96 O
TER
ATOM 2 P G A 23 -12.010 3.173 25.835 1.00 31.03 P
ATOM 3 OP1 G A 23 -12.731 2.166 26.653 1.00 33.83 O
ATOM 4 OP2 G A 23 -10.941 3.976 26.474 1.00 22.82 O
ATOM 5 O5' G A 23 -11.454 2.492 24.506 1.00 25.90 O
ATOM 6 C5' G A 23 -12.189 1.472 23.847 1.00 24.57 C
ATOM 7 C4' G A 23 -11.521 1.046 22.562 1.00 25.58 C
ATOM 8 O4' G A 23 -11.342 2.198 21.690 1.00 28.39 O
ATOM 9 C3' G A 23 -10.117 0.478 22.689 1.00 23.92 C
ATOM 10 O3' G A 23 -10.089 -0.870 23.115 1.00 23.34 O
ATOM 11 C2' G A 23 -9.567 0.686 21.291 1.00 23.04 C
ATOM 12 O2' G A 23 -10.139 -0.247 20.387 1.00 22.89 O
ATOM 13 C1' G A 23 -10.127 2.069 20.976 1.00 23.65 C
ATOM 14 N9 G A 23 -9.208 3.127 21.428 1.00 23.18 N
ATOM 15 C8 G A 23 -9.274 3.832 22.603 1.00 22.72 C
ATOM 16 N7 G A 23 -8.299 4.686 22.739 1.00 23.21 N
ATOM 17 C5 G A 23 -7.539 4.527 21.590 1.00 24.98 C
ATOM 18 C6 G A 23 -6.354 5.184 21.176 1.00 23.69 C
ATOM 19 O6 G A 23 -5.717 6.067 21.762 1.00 24.97 O
ATOM 20 N1 G A 23 -5.917 4.713 19.944 1.00 22.23 N
ATOM 21 C2 G A 23 -6.533 3.737 19.201 1.00 22.79 C
ATOM 22 N2 G A 23 -5.950 3.427 18.033 1.00 20.70 N
ATOM 23 N3 G A 23 -7.641 3.118 19.575 1.00 22.40 N
ATOM 24 C4 G A 23 -8.083 3.560 20.772 1.00 23.83 C
ATOM 25 P U A 24 -8.882 -1.392 24.038 1.00 27.35 P
ATOM 26 OP1 U A 24 -9.041 -2.861 24.173 1.00 30.07 O
ATOM 27 OP2 U A 24 -8.881 -0.556 25.264 1.00 25.30 O
ATOM 28 O5' U A 24 -7.591 -1.062 23.164 1.00 26.85 O
TER
ATOM 1 O3' C B 65 -1.867 7.748 11.026 1.00 21.24 O
ATOM 2 P G B 66 -1.615 6.297 11.665 1.00 22.90 P
ATOM 3 OP1 G B 66 -0.263 6.317 12.273 1.00 18.42 O
ATOM 4 OP2 G B 66 -1.908 5.298 10.612 1.00 15.60 O
ATOM 5 O5' G B 66 -2.722 6.217 12.805 1.00 20.60 O
ATOM 6 C5' G B 66 -2.695 7.105 13.919 1.00 21.02 C
ATOM 7 C4' G B 66 -3.628 6.643 15.011 1.00 21.72 C
ATOM 8 O4' G B 66 -4.979 6.569 14.475 1.00 19.97 O
ATOM 9 C3' G B 66 -3.321 5.255 15.574 1.00 19.88 C
ATOM 10 O3' G B 66 -3.703 5.202 16.949 1.00 22.00 O
ATOM 11 C2' G B 66 -4.247 4.361 14.759 1.00 18.62 C
ATOM 12 O2' G B 66 -4.562 3.128 15.370 1.00 21.07 O
ATOM 13 C1' G B 66 -5.474 5.251 14.615 1.00 20.51 C
ATOM 14 N9 G B 66 -6.302 4.938 13.448 1.00 20.89 N
ATOM 15 C8 G B 66 -5.928 4.916 12.127 1.00 21.64 C
ATOM 16 N7 G B 66 -6.901 4.577 11.324 1.00 20.24 N
ATOM 17 C5 G B 66 -7.979 4.354 12.168 1.00 21.39 C
ATOM 18 C6 G B 66 -9.310 3.962 11.880 1.00 23.95 C
ATOM 19 O6 G B 66 -9.825 3.721 10.780 1.00 23.50 O
ATOM 20 N1 G B 66 -10.070 3.860 13.041 1.00 22.14 N
ATOM 21 C2 G B 66 -9.614 4.097 14.313 1.00 22.36 C
ATOM 22 N2 G B 66 -10.501 3.940 15.306 1.00 24.56 N
ATOM 23 N3 G B 66 -8.377 4.462 14.594 1.00 20.85 N
ATOM 24 C4 G B 66 -7.623 4.569 13.482 1.00 21.90 C
ATOM 25 P G B 67 -2.595 5.342 18.107 1.00 26.32 P
ATOM 26 OP1 G B 67 -3.298 5.197 19.403 1.00 28.16 O
ATOM 27 OP2 G B 67 -1.840 6.592 17.845 1.00 25.47 O
ATOM 28 O5' G B 67 -1.656 4.081 17.855 1.00 19.96 O
TER
Atoms:
OP1: (-12.731,2.166,26.653)
OP2: (-10.941,3.976,26.474)
C3': (-10.117,0.478,22.689)
C1': (-10.127,2.069,20.976)
C5': (-12.189,1.472,23.847)
O6: (-5.717,6.067,21.762)
O4': (-11.342,2.198,21.690)
C8: (-9.274,3.832,22.603)
C2: (-6.533,3.737,19.201)
C6: (-6.354,5.184,21.176)
C5: (-7.539,4.527,21.590)
C4: (-8.083,3.560,20.772)
P: (-12.010,3.173,25.835)
C4': (-11.521,1.046,22.562)
C2': (-9.567,0.686,21.291)
O2': (-10.139,-0.247,20.387)
N1: (-5.917,4.713,19.944)
N2: (-5.950,3.427,18.033)
N3: (-7.641,3.118,19.575)
N7: (-8.299,4.686,22.739)
N9: (-9.208,3.127,21.428)
O5': (-11.454,2.492,24.506)
O3': (-10.089,-0.870,23.115)
OP2: (-10.941,3.976,26.474)
C3': (-10.117,0.478,22.689)
C1': (-10.127,2.069,20.976)
C5': (-12.189,1.472,23.847)
O6: (-5.717,6.067,21.762)
O4': (-11.342,2.198,21.690)
C8: (-9.274,3.832,22.603)
C2: (-6.533,3.737,19.201)
C6: (-6.354,5.184,21.176)
C5: (-7.539,4.527,21.590)
C4: (-8.083,3.560,20.772)
P: (-12.010,3.173,25.835)
C4': (-11.521,1.046,22.562)
C2': (-9.567,0.686,21.291)
O2': (-10.139,-0.247,20.387)
N1: (-5.917,4.713,19.944)
N2: (-5.950,3.427,18.033)
N3: (-7.641,3.118,19.575)
N7: (-8.299,4.686,22.739)
N9: (-9.208,3.127,21.428)
O5': (-11.454,2.492,24.506)
O3': (-10.089,-0.870,23.115)
OP1: (-0.263,6.317,12.273)
OP2: (-1.908,5.298,10.612)
C3': (-3.321,5.255,15.574)
C1': (-5.474,5.251,14.615)
C5': (-2.695,7.105,13.919)
O6: (-9.825,3.721,10.780)
O4': (-4.979,6.569,14.475)
C8: (-5.928,4.916,12.127)
C2: (-9.614,4.097,14.313)
C6: (-9.310,3.962,11.880)
C5: (-7.979,4.354,12.168)
C4: (-7.623,4.569,13.482)
P: (-1.615,6.297,11.665)
C4': (-3.628,6.643,15.011)
C2': (-4.247,4.361,14.759)
O2': (-4.562,3.128,15.370)
N1: (-10.070,3.860,13.041)
N2: (-10.501,3.940,15.306)
N3: (-8.377,4.462,14.594)
N7: (-6.901,4.577,11.324)
N9: (-6.302,4.938,13.448)
O5': (-2.722,6.217,12.805)
O3': (-3.703,5.202,16.949)
OP2: (-1.908,5.298,10.612)
C3': (-3.321,5.255,15.574)
C1': (-5.474,5.251,14.615)
C5': (-2.695,7.105,13.919)
O6: (-9.825,3.721,10.780)
O4': (-4.979,6.569,14.475)
C8: (-5.928,4.916,12.127)
C2: (-9.614,4.097,14.313)
C6: (-9.310,3.962,11.880)
C5: (-7.979,4.354,12.168)
C4: (-7.623,4.569,13.482)
P: (-1.615,6.297,11.665)
C4': (-3.628,6.643,15.011)
C2': (-4.247,4.361,14.759)
O2': (-4.562,3.128,15.370)
N1: (-10.070,3.860,13.041)
N2: (-10.501,3.940,15.306)
N3: (-8.377,4.462,14.594)
N7: (-6.901,4.577,11.324)
N9: (-6.302,4.938,13.448)
O5': (-2.722,6.217,12.805)
O3': (-3.703,5.202,16.949)
Image (generated by PyMOL):