Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11957:11994
Extra
PDB:
ATOM 1 O3' A A1956 -7.139 8.356 106.552 1.00 41.38 O
ATOM 2 P G A1957 -7.697 6.938 107.074 1.00 44.11 P
ATOM 3 OP1 G A1957 -8.361 7.164 108.365 1.00 44.58 O
ATOM 4 OP2 G A1957 -6.612 5.976 107.022 1.00 43.75 O
ATOM 5 O5' G A1957 -8.779 6.566 105.972 1.00 44.03 O
ATOM 6 C5' G A1957 -9.773 7.499 105.547 1.00 44.27 C
ATOM 7 C4' G A1957 -10.425 7.033 104.265 1.00 44.08 C
ATOM 8 O4' G A1957 -9.562 7.310 103.132 1.00 43.69 O
ATOM 9 C3' G A1957 -10.682 5.544 104.147 1.00 43.92 C
ATOM 10 O3' G A1957 -11.806 5.140 104.859 1.00 44.27 O
ATOM 11 C2' G A1957 -10.833 5.383 102.656 1.00 43.63 C
ATOM 12 O2' G A1957 -12.079 5.901 102.228 1.00 43.88 O
ATOM 13 C1' G A1957 -9.718 6.298 102.155 1.00 43.39 C
ATOM 14 N9 G A1957 -8.450 5.541 102.038 1.00 43.01 N
ATOM 15 C8 G A1957 -7.572 5.304 103.061 1.00 43.00 C
ATOM 16 N7 G A1957 -6.578 4.523 102.733 1.00 42.64 N
ATOM 17 C5 G A1957 -6.834 4.179 101.427 1.00 42.39 C
ATOM 18 C6 G A1957 -6.084 3.334 100.566 1.00 41.98 C
ATOM 19 O6 G A1957 -5.015 2.710 100.753 1.00 41.74 O
ATOM 20 N1 G A1957 -6.707 3.265 99.321 1.00 41.87 N
ATOM 21 C2 G A1957 -7.860 3.902 98.944 1.00 42.11 C
ATOM 22 N2 G A1957 -8.222 3.684 97.667 1.00 41.94 N
ATOM 23 N3 G A1957 -8.537 4.695 99.767 1.00 42.49 N
ATOM 24 C4 G A1957 -7.981 4.793 100.980 1.00 42.61 C
ATOM 25 P C A1958 -12.031 3.602 105.254 1.00 47.89 P
ATOM 26 OP1 C A1958 -13.439 3.498 105.731 1.00 48.31 O
ATOM 27 OP2 C A1958 -10.933 3.191 106.177 1.00 47.81 O
ATOM 28 O5' C A1958 -11.882 2.836 103.867 1.00 47.49 O
TER
ATOM 1 O3' U B1993 -5.285 0.324 92.383 1.00 41.92 O
ATOM 2 P G B1994 -4.976 1.798 91.903 1.00 41.57 P
ATOM 3 OP1 G B1994 -5.848 2.026 90.718 1.00 41.61 O
ATOM 4 OP2 G B1994 -3.514 1.923 91.746 1.00 41.27 O
ATOM 5 O5' G B1994 -5.447 2.694 93.100 1.00 41.91 O
ATOM 6 C5' G B1994 -6.769 3.150 93.168 1.00 42.24 C
ATOM 7 C4' G B1994 -7.037 3.825 94.470 1.00 42.56 C
ATOM 8 O4' G B1994 -6.176 3.260 95.501 1.00 42.48 O
ATOM 9 C3' G B1994 -6.743 5.309 94.475 1.00 42.66 C
ATOM 10 O3' G B1994 -7.500 5.898 95.519 1.00 43.05 O
ATOM 11 C2' G B1994 -5.308 5.336 94.888 1.00 42.43 C
ATOM 12 O2' G B1994 -4.894 6.575 95.362 1.00 42.57 O
ATOM 13 C1' G B1994 -5.340 4.287 95.999 1.00 42.50 C
ATOM 14 N9 G B1994 -4.039 3.734 96.281 1.00 42.23 N
ATOM 15 C8 G B1994 -3.340 2.992 95.361 1.00 41.87 C
ATOM 16 N7 G B1994 -2.162 2.646 95.770 1.00 41.68 N
ATOM 17 C5 G B1994 -2.091 3.251 97.009 1.00 41.93 C
ATOM 18 C6 G B1994 -1.025 3.220 97.868 1.00 41.88 C
ATOM 19 O6 G B1994 0.029 2.657 97.641 1.00 41.60 O
ATOM 20 N1 G B1994 -1.288 3.893 99.018 1.00 42.21 N
ATOM 21 C2 G B1994 -2.442 4.530 99.283 1.00 42.54 C
ATOM 22 N2 G B1994 -2.460 5.137 100.467 1.00 42.83 N
ATOM 23 N3 G B1994 -3.474 4.594 98.475 1.00 42.59 N
ATOM 24 C4 G B1994 -3.222 3.928 97.357 1.00 42.27 C
ATOM 25 P A B1995 -8.806 6.730 95.197 1.00 38.86 P
ATOM 26 OP1 A B1995 -9.910 5.874 95.532 1.00 39.05 O
ATOM 27 OP2 A B1995 -8.690 7.243 93.794 1.00 38.69 O
ATOM 28 O5' A B1995 -8.723 7.926 96.245 1.00 39.16 O
TER
ATOM 2 P G A1957 -7.697 6.938 107.074 1.00 44.11 P
ATOM 3 OP1 G A1957 -8.361 7.164 108.365 1.00 44.58 O
ATOM 4 OP2 G A1957 -6.612 5.976 107.022 1.00 43.75 O
ATOM 5 O5' G A1957 -8.779 6.566 105.972 1.00 44.03 O
ATOM 6 C5' G A1957 -9.773 7.499 105.547 1.00 44.27 C
ATOM 7 C4' G A1957 -10.425 7.033 104.265 1.00 44.08 C
ATOM 8 O4' G A1957 -9.562 7.310 103.132 1.00 43.69 O
ATOM 9 C3' G A1957 -10.682 5.544 104.147 1.00 43.92 C
ATOM 10 O3' G A1957 -11.806 5.140 104.859 1.00 44.27 O
ATOM 11 C2' G A1957 -10.833 5.383 102.656 1.00 43.63 C
ATOM 12 O2' G A1957 -12.079 5.901 102.228 1.00 43.88 O
ATOM 13 C1' G A1957 -9.718 6.298 102.155 1.00 43.39 C
ATOM 14 N9 G A1957 -8.450 5.541 102.038 1.00 43.01 N
ATOM 15 C8 G A1957 -7.572 5.304 103.061 1.00 43.00 C
ATOM 16 N7 G A1957 -6.578 4.523 102.733 1.00 42.64 N
ATOM 17 C5 G A1957 -6.834 4.179 101.427 1.00 42.39 C
ATOM 18 C6 G A1957 -6.084 3.334 100.566 1.00 41.98 C
ATOM 19 O6 G A1957 -5.015 2.710 100.753 1.00 41.74 O
ATOM 20 N1 G A1957 -6.707 3.265 99.321 1.00 41.87 N
ATOM 21 C2 G A1957 -7.860 3.902 98.944 1.00 42.11 C
ATOM 22 N2 G A1957 -8.222 3.684 97.667 1.00 41.94 N
ATOM 23 N3 G A1957 -8.537 4.695 99.767 1.00 42.49 N
ATOM 24 C4 G A1957 -7.981 4.793 100.980 1.00 42.61 C
ATOM 25 P C A1958 -12.031 3.602 105.254 1.00 47.89 P
ATOM 26 OP1 C A1958 -13.439 3.498 105.731 1.00 48.31 O
ATOM 27 OP2 C A1958 -10.933 3.191 106.177 1.00 47.81 O
ATOM 28 O5' C A1958 -11.882 2.836 103.867 1.00 47.49 O
TER
ATOM 1 O3' U B1993 -5.285 0.324 92.383 1.00 41.92 O
ATOM 2 P G B1994 -4.976 1.798 91.903 1.00 41.57 P
ATOM 3 OP1 G B1994 -5.848 2.026 90.718 1.00 41.61 O
ATOM 4 OP2 G B1994 -3.514 1.923 91.746 1.00 41.27 O
ATOM 5 O5' G B1994 -5.447 2.694 93.100 1.00 41.91 O
ATOM 6 C5' G B1994 -6.769 3.150 93.168 1.00 42.24 C
ATOM 7 C4' G B1994 -7.037 3.825 94.470 1.00 42.56 C
ATOM 8 O4' G B1994 -6.176 3.260 95.501 1.00 42.48 O
ATOM 9 C3' G B1994 -6.743 5.309 94.475 1.00 42.66 C
ATOM 10 O3' G B1994 -7.500 5.898 95.519 1.00 43.05 O
ATOM 11 C2' G B1994 -5.308 5.336 94.888 1.00 42.43 C
ATOM 12 O2' G B1994 -4.894 6.575 95.362 1.00 42.57 O
ATOM 13 C1' G B1994 -5.340 4.287 95.999 1.00 42.50 C
ATOM 14 N9 G B1994 -4.039 3.734 96.281 1.00 42.23 N
ATOM 15 C8 G B1994 -3.340 2.992 95.361 1.00 41.87 C
ATOM 16 N7 G B1994 -2.162 2.646 95.770 1.00 41.68 N
ATOM 17 C5 G B1994 -2.091 3.251 97.009 1.00 41.93 C
ATOM 18 C6 G B1994 -1.025 3.220 97.868 1.00 41.88 C
ATOM 19 O6 G B1994 0.029 2.657 97.641 1.00 41.60 O
ATOM 20 N1 G B1994 -1.288 3.893 99.018 1.00 42.21 N
ATOM 21 C2 G B1994 -2.442 4.530 99.283 1.00 42.54 C
ATOM 22 N2 G B1994 -2.460 5.137 100.467 1.00 42.83 N
ATOM 23 N3 G B1994 -3.474 4.594 98.475 1.00 42.59 N
ATOM 24 C4 G B1994 -3.222 3.928 97.357 1.00 42.27 C
ATOM 25 P A B1995 -8.806 6.730 95.197 1.00 38.86 P
ATOM 26 OP1 A B1995 -9.910 5.874 95.532 1.00 39.05 O
ATOM 27 OP2 A B1995 -8.690 7.243 93.794 1.00 38.69 O
ATOM 28 O5' A B1995 -8.723 7.926 96.245 1.00 39.16 O
TER
Atoms:
OP1: (-8.361,7.164,108.365)
OP2: (-6.612,5.976,107.022)
C3': (-10.682,5.544,104.147)
C1': (-9.718,6.298,102.155)
C5': (-9.773,7.499,105.547)
O6: (-5.015,2.710,100.753)
O4': (-9.562,7.310,103.132)
C8: (-7.572,5.304,103.061)
C2: (-7.860,3.902,98.944)
C6: (-6.084,3.334,100.566)
C5: (-6.834,4.179,101.427)
C4: (-7.981,4.793,100.980)
P: (-7.697,6.938,107.074)
C4': (-10.425,7.033,104.265)
C2': (-10.833,5.383,102.656)
O2': (-12.079,5.901,102.228)
N1: (-6.707,3.265,99.321)
N2: (-8.222,3.684,97.667)
N3: (-8.537,4.695,99.767)
N7: (-6.578,4.523,102.733)
N9: (-8.450,5.541,102.038)
O5': (-8.779,6.566,105.972)
O3': (-11.806,5.140,104.859)
OP2: (-6.612,5.976,107.022)
C3': (-10.682,5.544,104.147)
C1': (-9.718,6.298,102.155)
C5': (-9.773,7.499,105.547)
O6: (-5.015,2.710,100.753)
O4': (-9.562,7.310,103.132)
C8: (-7.572,5.304,103.061)
C2: (-7.860,3.902,98.944)
C6: (-6.084,3.334,100.566)
C5: (-6.834,4.179,101.427)
C4: (-7.981,4.793,100.980)
P: (-7.697,6.938,107.074)
C4': (-10.425,7.033,104.265)
C2': (-10.833,5.383,102.656)
O2': (-12.079,5.901,102.228)
N1: (-6.707,3.265,99.321)
N2: (-8.222,3.684,97.667)
N3: (-8.537,4.695,99.767)
N7: (-6.578,4.523,102.733)
N9: (-8.450,5.541,102.038)
O5': (-8.779,6.566,105.972)
O3': (-11.806,5.140,104.859)
OP1: (-5.848,2.026,90.718)
OP2: (-3.514,1.923,91.746)
C3': (-6.743,5.309,94.475)
C1': (-5.340,4.287,95.999)
C5': (-6.769,3.150,93.168)
O6: (0.029,2.657,97.641)
O4': (-6.176,3.260,95.501)
C8: (-3.340,2.992,95.361)
C2: (-2.442,4.530,99.283)
C6: (-1.025,3.220,97.868)
C5: (-2.091,3.251,97.009)
C4: (-3.222,3.928,97.357)
P: (-4.976,1.798,91.903)
C4': (-7.037,3.825,94.470)
C2': (-5.308,5.336,94.888)
O2': (-4.894,6.575,95.362)
N1: (-1.288,3.893,99.018)
N2: (-2.460,5.137,100.467)
N3: (-3.474,4.594,98.475)
N7: (-2.162,2.646,95.770)
N9: (-4.039,3.734,96.281)
O5': (-5.447,2.694,93.100)
O3': (-7.500,5.898,95.519)
OP2: (-3.514,1.923,91.746)
C3': (-6.743,5.309,94.475)
C1': (-5.340,4.287,95.999)
C5': (-6.769,3.150,93.168)
O6: (0.029,2.657,97.641)
O4': (-6.176,3.260,95.501)
C8: (-3.340,2.992,95.361)
C2: (-2.442,4.530,99.283)
C6: (-1.025,3.220,97.868)
C5: (-2.091,3.251,97.009)
C4: (-3.222,3.928,97.357)
P: (-4.976,1.798,91.903)
C4': (-7.037,3.825,94.470)
C2': (-5.308,5.336,94.888)
O2': (-4.894,6.575,95.362)
N1: (-1.288,3.893,99.018)
N2: (-2.460,5.137,100.467)
N3: (-3.474,4.594,98.475)
N7: (-2.162,2.646,95.770)
N9: (-4.039,3.734,96.281)
O5': (-5.447,2.694,93.100)
O3': (-7.500,5.898,95.519)
Image (generated by PyMOL):