Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:336:340
Extra
PDB:
ATOM 1 O3' C A 35 8.866 -92.152 45.302 1.00 77.40 O
ATOM 2 P G A 36 7.620 -91.477 46.062 1.00 66.15 P
ATOM 3 OP1 G A 36 8.172 -90.564 47.107 1.00 65.04 O
ATOM 4 OP2 G A 36 6.702 -92.571 46.482 1.00 66.78 O
ATOM 5 O5' G A 36 6.979 -90.615 44.902 1.00 66.47 O
ATOM 6 C5' G A 36 7.761 -89.642 44.239 1.00 66.07 C
ATOM 7 C4' G A 36 6.942 -88.845 43.275 1.00 66.39 C
ATOM 8 O4' G A 36 6.728 -89.614 42.068 1.00 67.42 O
ATOM 9 C3' G A 36 5.550 -88.476 43.744 1.00 66.41 C
ATOM 10 O3' G A 36 5.544 -87.307 44.551 1.00 65.47 O
ATOM 11 C2' G A 36 4.794 -88.313 42.440 1.00 67.18 C
ATOM 12 O2' G A 36 5.081 -87.051 41.881 1.00 66.76 O
ATOM 13 C1' G A 36 5.436 -89.374 41.565 1.00 67.93 C
ATOM 14 N9 G A 36 4.695 -90.645 41.584 1.00 68.78 N
ATOM 15 C8 G A 36 4.860 -91.665 42.494 1.00 68.79 C
ATOM 16 N7 G A 36 4.116 -92.714 42.260 1.00 69.67 N
ATOM 17 C5 G A 36 3.427 -92.351 41.117 1.00 70.25 C
ATOM 18 C6 G A 36 2.464 -93.078 40.403 1.00 71.28 C
ATOM 19 O6 G A 36 2.059 -94.220 40.689 1.00 71.86 O
ATOM 20 N1 G A 36 1.984 -92.364 39.293 1.00 71.61 N
ATOM 21 C2 G A 36 2.375 -91.112 38.913 1.00 71.04 C
ATOM 22 N2 G A 36 1.798 -90.606 37.811 1.00 71.51 N
ATOM 23 N3 G A 36 3.283 -90.427 39.587 1.00 70.08 N
ATOM 24 C4 G A 36 3.764 -91.094 40.670 1.00 69.73 C
ATOM 25 P U A 37 4.163 -86.690 45.100 1.00 68.57 P
ATOM 26 OP1 U A 37 4.516 -85.552 45.993 1.00 67.52 O
ATOM 27 OP2 U A 37 3.341 -87.827 45.648 1.00 69.11 O
ATOM 28 O5' U A 37 3.465 -86.140 43.791 1.00 69.14 O
TER
ATOM 1 O3' C B 39 -3.699 -90.219 35.602 1.00 74.68 O
ATOM 2 P G B 40 -2.891 -91.456 36.257 1.00 79.91 P
ATOM 3 OP1 G B 40 -3.808 -92.638 36.238 1.00 80.83 O
ATOM 4 OP2 G B 40 -2.347 -90.993 37.563 1.00 78.84 O
ATOM 5 O5' G B 40 -1.701 -91.687 35.235 1.00 80.17 O
ATOM 6 C5' G B 40 -0.976 -90.591 34.727 1.00 79.64 C
ATOM 7 C4' G B 40 0.347 -91.015 34.194 1.00 79.73 C
ATOM 8 O4' G B 40 1.003 -91.870 35.161 1.00 79.46 O
ATOM 9 C3' G B 40 0.307 -91.793 32.879 1.00 80.83 C
ATOM 10 O3' G B 40 1.202 -91.189 31.953 1.00 80.74 O
ATOM 11 C2' G B 40 0.817 -93.195 33.256 1.00 81.21 C
ATOM 12 O2' G B 40 1.574 -93.834 32.243 1.00 81.87 O
ATOM 13 C1' G B 40 1.671 -92.902 34.478 1.00 80.16 C
ATOM 14 N9 G B 40 1.858 -94.037 35.391 1.00 80.22 N
ATOM 15 C8 G B 40 1.208 -95.241 35.454 1.00 81.03 C
ATOM 16 N7 G B 40 1.626 -96.027 36.404 1.00 80.83 N
ATOM 17 C5 G B 40 2.631 -95.284 36.995 1.00 79.82 C
ATOM 18 C6 G B 40 3.476 -95.583 38.081 1.00 79.16 C
ATOM 19 O6 G B 40 3.487 -96.621 38.739 1.00 79.38 O
ATOM 20 N1 G B 40 4.369 -94.562 38.401 1.00 78.19 N
ATOM 21 C2 G B 40 4.428 -93.387 37.724 1.00 77.90 C
ATOM 22 N2 G B 40 5.327 -92.518 38.132 1.00 76.97 N
ATOM 23 N3 G B 40 3.647 -93.091 36.707 1.00 78.50 N
ATOM 24 C4 G B 40 2.787 -94.077 36.391 1.00 79.44 C
ATOM 25 P A B 41 0.792 -91.074 30.413 1.00 77.01 P
ATOM 26 OP1 A B 41 -0.614 -91.501 30.327 1.00 77.70 O
ATOM 27 OP2 A B 41 1.859 -91.833 29.609 1.00 77.54 O
ATOM 28 O5' A B 41 0.886 -89.510 30.143 1.00 76.33 O
TER
ATOM 2 P G A 36 7.620 -91.477 46.062 1.00 66.15 P
ATOM 3 OP1 G A 36 8.172 -90.564 47.107 1.00 65.04 O
ATOM 4 OP2 G A 36 6.702 -92.571 46.482 1.00 66.78 O
ATOM 5 O5' G A 36 6.979 -90.615 44.902 1.00 66.47 O
ATOM 6 C5' G A 36 7.761 -89.642 44.239 1.00 66.07 C
ATOM 7 C4' G A 36 6.942 -88.845 43.275 1.00 66.39 C
ATOM 8 O4' G A 36 6.728 -89.614 42.068 1.00 67.42 O
ATOM 9 C3' G A 36 5.550 -88.476 43.744 1.00 66.41 C
ATOM 10 O3' G A 36 5.544 -87.307 44.551 1.00 65.47 O
ATOM 11 C2' G A 36 4.794 -88.313 42.440 1.00 67.18 C
ATOM 12 O2' G A 36 5.081 -87.051 41.881 1.00 66.76 O
ATOM 13 C1' G A 36 5.436 -89.374 41.565 1.00 67.93 C
ATOM 14 N9 G A 36 4.695 -90.645 41.584 1.00 68.78 N
ATOM 15 C8 G A 36 4.860 -91.665 42.494 1.00 68.79 C
ATOM 16 N7 G A 36 4.116 -92.714 42.260 1.00 69.67 N
ATOM 17 C5 G A 36 3.427 -92.351 41.117 1.00 70.25 C
ATOM 18 C6 G A 36 2.464 -93.078 40.403 1.00 71.28 C
ATOM 19 O6 G A 36 2.059 -94.220 40.689 1.00 71.86 O
ATOM 20 N1 G A 36 1.984 -92.364 39.293 1.00 71.61 N
ATOM 21 C2 G A 36 2.375 -91.112 38.913 1.00 71.04 C
ATOM 22 N2 G A 36 1.798 -90.606 37.811 1.00 71.51 N
ATOM 23 N3 G A 36 3.283 -90.427 39.587 1.00 70.08 N
ATOM 24 C4 G A 36 3.764 -91.094 40.670 1.00 69.73 C
ATOM 25 P U A 37 4.163 -86.690 45.100 1.00 68.57 P
ATOM 26 OP1 U A 37 4.516 -85.552 45.993 1.00 67.52 O
ATOM 27 OP2 U A 37 3.341 -87.827 45.648 1.00 69.11 O
ATOM 28 O5' U A 37 3.465 -86.140 43.791 1.00 69.14 O
TER
ATOM 1 O3' C B 39 -3.699 -90.219 35.602 1.00 74.68 O
ATOM 2 P G B 40 -2.891 -91.456 36.257 1.00 79.91 P
ATOM 3 OP1 G B 40 -3.808 -92.638 36.238 1.00 80.83 O
ATOM 4 OP2 G B 40 -2.347 -90.993 37.563 1.00 78.84 O
ATOM 5 O5' G B 40 -1.701 -91.687 35.235 1.00 80.17 O
ATOM 6 C5' G B 40 -0.976 -90.591 34.727 1.00 79.64 C
ATOM 7 C4' G B 40 0.347 -91.015 34.194 1.00 79.73 C
ATOM 8 O4' G B 40 1.003 -91.870 35.161 1.00 79.46 O
ATOM 9 C3' G B 40 0.307 -91.793 32.879 1.00 80.83 C
ATOM 10 O3' G B 40 1.202 -91.189 31.953 1.00 80.74 O
ATOM 11 C2' G B 40 0.817 -93.195 33.256 1.00 81.21 C
ATOM 12 O2' G B 40 1.574 -93.834 32.243 1.00 81.87 O
ATOM 13 C1' G B 40 1.671 -92.902 34.478 1.00 80.16 C
ATOM 14 N9 G B 40 1.858 -94.037 35.391 1.00 80.22 N
ATOM 15 C8 G B 40 1.208 -95.241 35.454 1.00 81.03 C
ATOM 16 N7 G B 40 1.626 -96.027 36.404 1.00 80.83 N
ATOM 17 C5 G B 40 2.631 -95.284 36.995 1.00 79.82 C
ATOM 18 C6 G B 40 3.476 -95.583 38.081 1.00 79.16 C
ATOM 19 O6 G B 40 3.487 -96.621 38.739 1.00 79.38 O
ATOM 20 N1 G B 40 4.369 -94.562 38.401 1.00 78.19 N
ATOM 21 C2 G B 40 4.428 -93.387 37.724 1.00 77.90 C
ATOM 22 N2 G B 40 5.327 -92.518 38.132 1.00 76.97 N
ATOM 23 N3 G B 40 3.647 -93.091 36.707 1.00 78.50 N
ATOM 24 C4 G B 40 2.787 -94.077 36.391 1.00 79.44 C
ATOM 25 P A B 41 0.792 -91.074 30.413 1.00 77.01 P
ATOM 26 OP1 A B 41 -0.614 -91.501 30.327 1.00 77.70 O
ATOM 27 OP2 A B 41 1.859 -91.833 29.609 1.00 77.54 O
ATOM 28 O5' A B 41 0.886 -89.510 30.143 1.00 76.33 O
TER
Atoms:
OP1: (8.172,-90.564,47.107)
OP2: (6.702,-92.571,46.482)
C3': (5.550,-88.476,43.744)
C1': (5.436,-89.374,41.565)
C5': (7.761,-89.642,44.239)
O6: (2.059,-94.220,40.689)
O4': (6.728,-89.614,42.068)
C8: (4.860,-91.665,42.494)
C2: (2.375,-91.112,38.913)
C6: (2.464,-93.078,40.403)
C5: (3.427,-92.351,41.117)
C4: (3.764,-91.094,40.670)
P: (7.620,-91.477,46.062)
C4': (6.942,-88.845,43.275)
C2': (4.794,-88.313,42.440)
O2': (5.081,-87.051,41.881)
N1: (1.984,-92.364,39.293)
N2: (1.798,-90.606,37.811)
N3: (3.283,-90.427,39.587)
N7: (4.116,-92.714,42.260)
N9: (4.695,-90.645,41.584)
O5': (6.979,-90.615,44.902)
O3': (5.544,-87.307,44.551)
OP2: (6.702,-92.571,46.482)
C3': (5.550,-88.476,43.744)
C1': (5.436,-89.374,41.565)
C5': (7.761,-89.642,44.239)
O6: (2.059,-94.220,40.689)
O4': (6.728,-89.614,42.068)
C8: (4.860,-91.665,42.494)
C2: (2.375,-91.112,38.913)
C6: (2.464,-93.078,40.403)
C5: (3.427,-92.351,41.117)
C4: (3.764,-91.094,40.670)
P: (7.620,-91.477,46.062)
C4': (6.942,-88.845,43.275)
C2': (4.794,-88.313,42.440)
O2': (5.081,-87.051,41.881)
N1: (1.984,-92.364,39.293)
N2: (1.798,-90.606,37.811)
N3: (3.283,-90.427,39.587)
N7: (4.116,-92.714,42.260)
N9: (4.695,-90.645,41.584)
O5': (6.979,-90.615,44.902)
O3': (5.544,-87.307,44.551)
OP1: (-3.808,-92.638,36.238)
OP2: (-2.347,-90.993,37.563)
C3': (0.307,-91.793,32.879)
C1': (1.671,-92.902,34.478)
C5': (-0.976,-90.591,34.727)
O6: (3.487,-96.621,38.739)
O4': (1.003,-91.870,35.161)
C8: (1.208,-95.241,35.454)
C2: (4.428,-93.387,37.724)
C6: (3.476,-95.583,38.081)
C5: (2.631,-95.284,36.995)
C4: (2.787,-94.077,36.391)
P: (-2.891,-91.456,36.257)
C4': (0.347,-91.015,34.194)
C2': (0.817,-93.195,33.256)
O2': (1.574,-93.834,32.243)
N1: (4.369,-94.562,38.401)
N2: (5.327,-92.518,38.132)
N3: (3.647,-93.091,36.707)
N7: (1.626,-96.027,36.404)
N9: (1.858,-94.037,35.391)
O5': (-1.701,-91.687,35.235)
O3': (1.202,-91.189,31.953)
OP2: (-2.347,-90.993,37.563)
C3': (0.307,-91.793,32.879)
C1': (1.671,-92.902,34.478)
C5': (-0.976,-90.591,34.727)
O6: (3.487,-96.621,38.739)
O4': (1.003,-91.870,35.161)
C8: (1.208,-95.241,35.454)
C2: (4.428,-93.387,37.724)
C6: (3.476,-95.583,38.081)
C5: (2.631,-95.284,36.995)
C4: (2.787,-94.077,36.391)
P: (-2.891,-91.456,36.257)
C4': (0.347,-91.015,34.194)
C2': (0.817,-93.195,33.256)
O2': (1.574,-93.834,32.243)
N1: (4.369,-94.562,38.401)
N2: (5.327,-92.518,38.132)
N3: (3.647,-93.091,36.707)
N7: (1.626,-96.027,36.404)
N9: (1.858,-94.037,35.391)
O5': (-1.701,-91.687,35.235)
O3': (1.202,-91.189,31.953)
Image (generated by PyMOL):