Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01878:0407
Extra
PDB:
ATOM 1 O3' A A1877 97.694 77.017 29.887 1.00 71.70 O
ATOM 2 P C A1878 98.195 77.577 31.307 1.00 69.45 P
ATOM 3 OP1 C A1878 99.681 77.575 31.320 1.00 69.05 O
ATOM 4 OP2 C A1878 97.457 76.841 32.363 1.00 70.04 O
ATOM 5 O5' C A1878 97.713 79.094 31.309 1.00 68.33 O
ATOM 6 C5' C A1878 98.408 80.092 30.541 1.00 66.51 C
ATOM 7 C4' C A1878 97.680 81.411 30.624 1.00 65.30 C
ATOM 8 O4' C A1878 96.352 81.254 30.069 1.00 66.30 O
ATOM 9 C3' C A1878 97.444 81.940 32.027 1.00 63.93 C
ATOM 10 O3' C A1878 98.569 82.675 32.477 1.00 62.05 O
ATOM 11 C2' C A1878 96.229 82.836 31.842 1.00 64.77 C
ATOM 12 O2' C A1878 96.557 84.100 31.308 1.00 64.25 O
ATOM 13 C1' C A1878 95.435 82.058 30.793 1.00 66.23 C
ATOM 14 N1 C A1878 94.357 81.196 31.326 1.00 68.30 N
ATOM 15 C2 C A1878 93.195 81.799 31.833 1.00 68.35 C
ATOM 16 O2 C A1878 93.118 83.043 31.856 1.00 68.79 O
ATOM 17 N3 C A1878 92.189 81.014 32.284 1.00 68.60 N
ATOM 18 C4 C A1878 92.308 79.684 32.246 1.00 68.57 C
ATOM 19 N4 C A1878 91.280 78.951 32.685 1.00 68.59 N
ATOM 20 C5 C A1878 93.483 79.047 31.754 1.00 68.34 C
ATOM 21 C6 C A1878 94.473 79.831 31.313 1.00 68.29 C
ATOM 22 P A A1879 98.942 82.691 34.035 1.00 62.76 P
ATOM 23 OP1 A A1879 99.939 83.781 34.250 1.00 63.16 O
ATOM 24 OP2 A A1879 99.293 81.298 34.400 1.00 63.30 O
ATOM 25 O5' A A1879 97.584 83.097 34.768 1.00 61.40 O
TER
ATOM 1 O3' C B 406 83.565 85.681 33.678 1.00 44.05 O
ATOM 2 P A B 407 84.179 85.422 32.212 1.00 43.90 P
ATOM 3 OP1 A B 407 84.475 86.739 31.597 1.00 45.24 O
ATOM 4 OP2 A B 407 83.306 84.457 31.490 1.00 43.80 O
ATOM 5 O5' A B 407 85.558 84.695 32.511 1.00 42.47 O
ATOM 6 C5' A B 407 86.657 85.407 33.086 1.00 44.03 C
ATOM 7 C4' A B 407 87.865 84.512 33.140 1.00 47.39 C
ATOM 8 O4' A B 407 87.601 83.409 34.045 1.00 47.45 O
ATOM 9 C3' A B 407 88.210 83.849 31.817 1.00 48.79 C
ATOM 10 O3' A B 407 89.013 84.715 31.026 1.00 53.10 O
ATOM 11 C2' A B 407 88.952 82.603 32.270 1.00 47.83 C
ATOM 12 O2' A B 407 90.271 82.910 32.666 1.00 47.66 O
ATOM 13 C1' A B 407 88.134 82.211 33.505 1.00 47.27 C
ATOM 14 N9 A B 407 87.008 81.327 33.196 1.00 46.41 N
ATOM 15 C8 A B 407 85.699 81.678 32.950 1.00 46.06 C
ATOM 16 N7 A B 407 84.919 80.660 32.686 1.00 45.16 N
ATOM 17 C5 A B 407 85.766 79.562 32.772 1.00 44.64 C
ATOM 18 C6 A B 407 85.551 78.187 32.599 1.00 43.17 C
ATOM 19 N6 A B 407 84.364 77.649 32.302 1.00 41.15 N
ATOM 20 N1 A B 407 86.611 77.368 32.742 1.00 43.32 N
ATOM 21 C2 A B 407 87.801 77.899 33.041 1.00 43.15 C
ATOM 22 N3 A B 407 88.128 79.169 33.233 1.00 44.29 N
ATOM 23 C4 A B 407 87.054 79.960 33.083 1.00 44.57 C
ATOM 24 P U B 408 88.920 84.659 29.421 1.00 54.51 P
ATOM 25 OP1 U B 408 89.749 85.795 28.936 1.00 53.86 O
ATOM 26 OP2 U B 408 87.491 84.557 29.004 1.00 51.34 O
ATOM 27 O5' U B 408 89.693 83.317 29.053 1.00 53.55 O
TER
ATOM 2 P C A1878 98.195 77.577 31.307 1.00 69.45 P
ATOM 3 OP1 C A1878 99.681 77.575 31.320 1.00 69.05 O
ATOM 4 OP2 C A1878 97.457 76.841 32.363 1.00 70.04 O
ATOM 5 O5' C A1878 97.713 79.094 31.309 1.00 68.33 O
ATOM 6 C5' C A1878 98.408 80.092 30.541 1.00 66.51 C
ATOM 7 C4' C A1878 97.680 81.411 30.624 1.00 65.30 C
ATOM 8 O4' C A1878 96.352 81.254 30.069 1.00 66.30 O
ATOM 9 C3' C A1878 97.444 81.940 32.027 1.00 63.93 C
ATOM 10 O3' C A1878 98.569 82.675 32.477 1.00 62.05 O
ATOM 11 C2' C A1878 96.229 82.836 31.842 1.00 64.77 C
ATOM 12 O2' C A1878 96.557 84.100 31.308 1.00 64.25 O
ATOM 13 C1' C A1878 95.435 82.058 30.793 1.00 66.23 C
ATOM 14 N1 C A1878 94.357 81.196 31.326 1.00 68.30 N
ATOM 15 C2 C A1878 93.195 81.799 31.833 1.00 68.35 C
ATOM 16 O2 C A1878 93.118 83.043 31.856 1.00 68.79 O
ATOM 17 N3 C A1878 92.189 81.014 32.284 1.00 68.60 N
ATOM 18 C4 C A1878 92.308 79.684 32.246 1.00 68.57 C
ATOM 19 N4 C A1878 91.280 78.951 32.685 1.00 68.59 N
ATOM 20 C5 C A1878 93.483 79.047 31.754 1.00 68.34 C
ATOM 21 C6 C A1878 94.473 79.831 31.313 1.00 68.29 C
ATOM 22 P A A1879 98.942 82.691 34.035 1.00 62.76 P
ATOM 23 OP1 A A1879 99.939 83.781 34.250 1.00 63.16 O
ATOM 24 OP2 A A1879 99.293 81.298 34.400 1.00 63.30 O
ATOM 25 O5' A A1879 97.584 83.097 34.768 1.00 61.40 O
TER
ATOM 1 O3' C B 406 83.565 85.681 33.678 1.00 44.05 O
ATOM 2 P A B 407 84.179 85.422 32.212 1.00 43.90 P
ATOM 3 OP1 A B 407 84.475 86.739 31.597 1.00 45.24 O
ATOM 4 OP2 A B 407 83.306 84.457 31.490 1.00 43.80 O
ATOM 5 O5' A B 407 85.558 84.695 32.511 1.00 42.47 O
ATOM 6 C5' A B 407 86.657 85.407 33.086 1.00 44.03 C
ATOM 7 C4' A B 407 87.865 84.512 33.140 1.00 47.39 C
ATOM 8 O4' A B 407 87.601 83.409 34.045 1.00 47.45 O
ATOM 9 C3' A B 407 88.210 83.849 31.817 1.00 48.79 C
ATOM 10 O3' A B 407 89.013 84.715 31.026 1.00 53.10 O
ATOM 11 C2' A B 407 88.952 82.603 32.270 1.00 47.83 C
ATOM 12 O2' A B 407 90.271 82.910 32.666 1.00 47.66 O
ATOM 13 C1' A B 407 88.134 82.211 33.505 1.00 47.27 C
ATOM 14 N9 A B 407 87.008 81.327 33.196 1.00 46.41 N
ATOM 15 C8 A B 407 85.699 81.678 32.950 1.00 46.06 C
ATOM 16 N7 A B 407 84.919 80.660 32.686 1.00 45.16 N
ATOM 17 C5 A B 407 85.766 79.562 32.772 1.00 44.64 C
ATOM 18 C6 A B 407 85.551 78.187 32.599 1.00 43.17 C
ATOM 19 N6 A B 407 84.364 77.649 32.302 1.00 41.15 N
ATOM 20 N1 A B 407 86.611 77.368 32.742 1.00 43.32 N
ATOM 21 C2 A B 407 87.801 77.899 33.041 1.00 43.15 C
ATOM 22 N3 A B 407 88.128 79.169 33.233 1.00 44.29 N
ATOM 23 C4 A B 407 87.054 79.960 33.083 1.00 44.57 C
ATOM 24 P U B 408 88.920 84.659 29.421 1.00 54.51 P
ATOM 25 OP1 U B 408 89.749 85.795 28.936 1.00 53.86 O
ATOM 26 OP2 U B 408 87.491 84.557 29.004 1.00 51.34 O
ATOM 27 O5' U B 408 89.693 83.317 29.053 1.00 53.55 O
TER
Atoms:
C2: (93.195,81.799,31.833)
OP1: (99.681,77.575,31.320)
OP2: (97.457,76.841,32.363)
C4: (92.308,79.684,32.246)
O5': (97.713,79.094,31.309)
C3': (97.444,81.940,32.027)
C1': (95.435,82.058,30.793)
O4': (96.352,81.254,30.069)
C5': (98.408,80.092,30.541)
P: (98.195,77.577,31.307)
O2: (93.118,83.043,31.856)
C4': (97.680,81.411,30.624)
C2': (96.229,82.836,31.842)
O2': (96.557,84.100,31.308)
N1: (94.357,81.196,31.326)
N3: (92.189,81.014,32.284)
N4: (91.280,78.951,32.685)
C6: (94.473,79.831,31.313)
C5: (93.483,79.047,31.754)
O3': (98.569,82.675,32.477)
OP1: (99.681,77.575,31.320)
OP2: (97.457,76.841,32.363)
C4: (92.308,79.684,32.246)
O5': (97.713,79.094,31.309)
C3': (97.444,81.940,32.027)
C1': (95.435,82.058,30.793)
O4': (96.352,81.254,30.069)
C5': (98.408,80.092,30.541)
P: (98.195,77.577,31.307)
O2: (93.118,83.043,31.856)
C4': (97.680,81.411,30.624)
C2': (96.229,82.836,31.842)
O2': (96.557,84.100,31.308)
N1: (94.357,81.196,31.326)
N3: (92.189,81.014,32.284)
N4: (91.280,78.951,32.685)
C6: (94.473,79.831,31.313)
C5: (93.483,79.047,31.754)
O3': (98.569,82.675,32.477)
OP1: (84.475,86.739,31.597)
OP2: (83.306,84.457,31.490)
C3': (88.210,83.849,31.817)
C1': (88.134,82.211,33.505)
C5': (86.657,85.407,33.086)
O4': (87.601,83.409,34.045)
C8: (85.699,81.678,32.950)
O2': (90.271,82.910,32.666)
C6: (85.551,78.187,32.599)
C5: (85.766,79.562,32.772)
C4: (87.054,79.960,33.083)
P: (84.179,85.422,32.212)
C4': (87.865,84.512,33.140)
C2': (88.952,82.603,32.270)
C2: (87.801,77.899,33.041)
N1: (86.611,77.368,32.742)
N3: (88.128,79.169,33.233)
N6: (84.364,77.649,32.302)
N7: (84.919,80.660,32.686)
N9: (87.008,81.327,33.196)
O5': (85.558,84.695,32.511)
O3': (89.013,84.715,31.026)
OP2: (83.306,84.457,31.490)
C3': (88.210,83.849,31.817)
C1': (88.134,82.211,33.505)
C5': (86.657,85.407,33.086)
O4': (87.601,83.409,34.045)
C8: (85.699,81.678,32.950)
O2': (90.271,82.910,32.666)
C6: (85.551,78.187,32.599)
C5: (85.766,79.562,32.772)
C4: (87.054,79.960,33.083)
P: (84.179,85.422,32.212)
C4': (87.865,84.512,33.140)
C2': (88.952,82.603,32.270)
C2: (87.801,77.899,33.041)
N1: (86.611,77.368,32.742)
N3: (88.128,79.169,33.233)
N6: (84.364,77.649,32.302)
N7: (84.919,80.660,32.686)
N9: (87.008,81.327,33.196)
O5': (85.558,84.695,32.511)
O3': (89.013,84.715,31.026)
Image (generated by PyMOL):