Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:169:167
Extra
PDB:
ATOM 1 O3' A A 68 58.372 -64.776 107.254 1.00 53.10 O
ATOM 2 P C A 69 59.383 -65.520 106.266 1.00 52.67 P
ATOM 3 OP1 C A 69 59.225 -64.920 104.896 1.00 52.10 O
ATOM 4 OP2 C A 69 59.171 -66.967 106.449 1.00 53.20 O
ATOM 5 O5' C A 69 60.788 -65.094 106.854 1.00 52.85 O
ATOM 6 C5' C A 69 61.815 -64.620 106.013 1.00 52.62 C
ATOM 7 C4' C A 69 63.006 -64.225 106.823 1.00 52.85 C
ATOM 8 O4' C A 69 62.698 -63.018 107.561 1.00 52.59 O
ATOM 9 C3' C A 69 63.439 -65.239 107.872 1.00 53.54 C
ATOM 10 O3' C A 69 64.345 -66.183 107.348 1.00 53.87 O
ATOM 11 C2' C A 69 64.035 -64.393 108.983 1.00 53.63 C
ATOM 12 O2' C A 69 65.415 -64.163 108.731 1.00 53.70 O
ATOM 13 C1' C A 69 63.274 -63.063 108.841 1.00 53.03 C
ATOM 14 N1 C A 69 62.187 -62.920 109.806 1.00 53.09 N
ATOM 15 C2 C A 69 61.763 -61.593 109.983 1.00 52.65 C
ATOM 16 O2 C A 69 62.387 -60.746 109.351 1.00 52.29 O
ATOM 17 N3 C A 69 60.719 -61.284 110.807 1.00 52.64 N
ATOM 18 C4 C A 69 60.122 -62.314 111.442 1.00 53.07 C
ATOM 19 N4 C A 69 59.115 -62.054 112.273 1.00 53.09 N
ATOM 20 C5 C A 69 60.531 -63.677 111.254 1.00 53.52 C
ATOM 21 C6 C A 69 61.555 -63.956 110.428 1.00 53.53 C
ATOM 22 P C A 70 64.393 -67.668 107.929 1.00 57.09 P
ATOM 23 OP1 C A 70 65.317 -68.441 107.062 1.00 57.28 O
ATOM 24 OP2 C A 70 62.994 -68.126 108.076 1.00 57.08 O
ATOM 25 O5' C A 70 65.032 -67.445 109.355 1.00 57.49 O
TER
ATOM 1 O3' C B 66 56.722 -52.290 109.625 1.00 47.79 O
ATOM 2 P A B 67 56.136 -53.352 108.576 1.00 46.97 P
ATOM 3 OP1 A B 67 55.784 -52.610 107.351 1.00 46.41 O
ATOM 4 OP2 A B 67 55.081 -54.108 109.277 1.00 47.25 O
ATOM 5 O5' A B 67 57.386 -54.269 108.282 1.00 47.28 O
ATOM 6 C5' A B 67 57.240 -55.642 107.928 1.00 47.55 C
ATOM 7 C4' A B 67 58.117 -56.518 108.796 1.00 48.14 C
ATOM 8 O4' A B 67 57.704 -56.407 110.169 1.00 48.44 O
ATOM 9 C3' A B 67 58.084 -58.000 108.511 1.00 48.50 C
ATOM 10 O3' A B 67 58.967 -58.349 107.465 1.00 48.44 O
ATOM 11 C2' A B 67 58.467 -58.621 109.858 1.00 49.10 C
ATOM 12 O2' A B 67 59.878 -58.677 110.010 1.00 49.34 O
ATOM 13 C1' A B 67 57.938 -57.600 110.848 1.00 49.00 C
ATOM 14 N9 A B 67 56.687 -57.991 111.492 1.00 49.15 N
ATOM 15 C8 A B 67 55.600 -57.195 111.406 1.00 48.77 C
ATOM 16 N7 A B 67 54.614 -57.647 112.121 1.00 49.00 N
ATOM 17 C5 A B 67 55.099 -58.792 112.712 1.00 49.57 C
ATOM 18 C6 A B 67 54.510 -59.701 113.570 1.00 50.03 C
ATOM 19 N6 A B 67 53.264 -59.567 113.984 1.00 49.98 N
ATOM 20 N1 A B 67 55.251 -60.734 114.006 1.00 50.57 N
ATOM 21 C2 A B 67 56.514 -60.827 113.595 1.00 50.62 C
ATOM 22 N3 A B 67 57.168 -60.034 112.774 1.00 50.20 N
ATOM 23 C4 A B 67 56.398 -59.015 112.363 1.00 49.68 C
ATOM 24 P A B 68 58.447 -59.179 106.227 1.00 51.02 P
ATOM 25 OP1 A B 68 59.515 -59.206 105.207 1.00 50.91 O
ATOM 26 OP2 A B 68 57.155 -58.601 105.873 1.00 50.61 O
ATOM 27 O5' A B 68 58.254 -60.615 106.858 1.00 51.61 O
TER
ATOM 2 P C A 69 59.383 -65.520 106.266 1.00 52.67 P
ATOM 3 OP1 C A 69 59.225 -64.920 104.896 1.00 52.10 O
ATOM 4 OP2 C A 69 59.171 -66.967 106.449 1.00 53.20 O
ATOM 5 O5' C A 69 60.788 -65.094 106.854 1.00 52.85 O
ATOM 6 C5' C A 69 61.815 -64.620 106.013 1.00 52.62 C
ATOM 7 C4' C A 69 63.006 -64.225 106.823 1.00 52.85 C
ATOM 8 O4' C A 69 62.698 -63.018 107.561 1.00 52.59 O
ATOM 9 C3' C A 69 63.439 -65.239 107.872 1.00 53.54 C
ATOM 10 O3' C A 69 64.345 -66.183 107.348 1.00 53.87 O
ATOM 11 C2' C A 69 64.035 -64.393 108.983 1.00 53.63 C
ATOM 12 O2' C A 69 65.415 -64.163 108.731 1.00 53.70 O
ATOM 13 C1' C A 69 63.274 -63.063 108.841 1.00 53.03 C
ATOM 14 N1 C A 69 62.187 -62.920 109.806 1.00 53.09 N
ATOM 15 C2 C A 69 61.763 -61.593 109.983 1.00 52.65 C
ATOM 16 O2 C A 69 62.387 -60.746 109.351 1.00 52.29 O
ATOM 17 N3 C A 69 60.719 -61.284 110.807 1.00 52.64 N
ATOM 18 C4 C A 69 60.122 -62.314 111.442 1.00 53.07 C
ATOM 19 N4 C A 69 59.115 -62.054 112.273 1.00 53.09 N
ATOM 20 C5 C A 69 60.531 -63.677 111.254 1.00 53.52 C
ATOM 21 C6 C A 69 61.555 -63.956 110.428 1.00 53.53 C
ATOM 22 P C A 70 64.393 -67.668 107.929 1.00 57.09 P
ATOM 23 OP1 C A 70 65.317 -68.441 107.062 1.00 57.28 O
ATOM 24 OP2 C A 70 62.994 -68.126 108.076 1.00 57.08 O
ATOM 25 O5' C A 70 65.032 -67.445 109.355 1.00 57.49 O
TER
ATOM 1 O3' C B 66 56.722 -52.290 109.625 1.00 47.79 O
ATOM 2 P A B 67 56.136 -53.352 108.576 1.00 46.97 P
ATOM 3 OP1 A B 67 55.784 -52.610 107.351 1.00 46.41 O
ATOM 4 OP2 A B 67 55.081 -54.108 109.277 1.00 47.25 O
ATOM 5 O5' A B 67 57.386 -54.269 108.282 1.00 47.28 O
ATOM 6 C5' A B 67 57.240 -55.642 107.928 1.00 47.55 C
ATOM 7 C4' A B 67 58.117 -56.518 108.796 1.00 48.14 C
ATOM 8 O4' A B 67 57.704 -56.407 110.169 1.00 48.44 O
ATOM 9 C3' A B 67 58.084 -58.000 108.511 1.00 48.50 C
ATOM 10 O3' A B 67 58.967 -58.349 107.465 1.00 48.44 O
ATOM 11 C2' A B 67 58.467 -58.621 109.858 1.00 49.10 C
ATOM 12 O2' A B 67 59.878 -58.677 110.010 1.00 49.34 O
ATOM 13 C1' A B 67 57.938 -57.600 110.848 1.00 49.00 C
ATOM 14 N9 A B 67 56.687 -57.991 111.492 1.00 49.15 N
ATOM 15 C8 A B 67 55.600 -57.195 111.406 1.00 48.77 C
ATOM 16 N7 A B 67 54.614 -57.647 112.121 1.00 49.00 N
ATOM 17 C5 A B 67 55.099 -58.792 112.712 1.00 49.57 C
ATOM 18 C6 A B 67 54.510 -59.701 113.570 1.00 50.03 C
ATOM 19 N6 A B 67 53.264 -59.567 113.984 1.00 49.98 N
ATOM 20 N1 A B 67 55.251 -60.734 114.006 1.00 50.57 N
ATOM 21 C2 A B 67 56.514 -60.827 113.595 1.00 50.62 C
ATOM 22 N3 A B 67 57.168 -60.034 112.774 1.00 50.20 N
ATOM 23 C4 A B 67 56.398 -59.015 112.363 1.00 49.68 C
ATOM 24 P A B 68 58.447 -59.179 106.227 1.00 51.02 P
ATOM 25 OP1 A B 68 59.515 -59.206 105.207 1.00 50.91 O
ATOM 26 OP2 A B 68 57.155 -58.601 105.873 1.00 50.61 O
ATOM 27 O5' A B 68 58.254 -60.615 106.858 1.00 51.61 O
TER
Atoms:
C2: (61.763,-61.593,109.983)
OP1: (59.225,-64.920,104.896)
OP2: (59.171,-66.967,106.449)
C4: (60.122,-62.314,111.442)
O5': (60.788,-65.094,106.854)
C3': (63.439,-65.239,107.872)
C1': (63.274,-63.063,108.841)
O4': (62.698,-63.018,107.561)
C5': (61.815,-64.620,106.013)
P: (59.383,-65.520,106.266)
O2: (62.387,-60.746,109.351)
C4': (63.006,-64.225,106.823)
C2': (64.035,-64.393,108.983)
O2': (65.415,-64.163,108.731)
N1: (62.187,-62.920,109.806)
N3: (60.719,-61.284,110.807)
N4: (59.115,-62.054,112.273)
C6: (61.555,-63.956,110.428)
C5: (60.531,-63.677,111.254)
O3': (64.345,-66.183,107.348)
OP1: (59.225,-64.920,104.896)
OP2: (59.171,-66.967,106.449)
C4: (60.122,-62.314,111.442)
O5': (60.788,-65.094,106.854)
C3': (63.439,-65.239,107.872)
C1': (63.274,-63.063,108.841)
O4': (62.698,-63.018,107.561)
C5': (61.815,-64.620,106.013)
P: (59.383,-65.520,106.266)
O2: (62.387,-60.746,109.351)
C4': (63.006,-64.225,106.823)
C2': (64.035,-64.393,108.983)
O2': (65.415,-64.163,108.731)
N1: (62.187,-62.920,109.806)
N3: (60.719,-61.284,110.807)
N4: (59.115,-62.054,112.273)
C6: (61.555,-63.956,110.428)
C5: (60.531,-63.677,111.254)
O3': (64.345,-66.183,107.348)
OP1: (55.784,-52.610,107.351)
OP2: (55.081,-54.108,109.277)
C3': (58.084,-58.000,108.511)
C1': (57.938,-57.600,110.848)
C5': (57.240,-55.642,107.928)
O4': (57.704,-56.407,110.169)
C8: (55.600,-57.195,111.406)
O2': (59.878,-58.677,110.010)
C6: (54.510,-59.701,113.570)
C5: (55.099,-58.792,112.712)
C4: (56.398,-59.015,112.363)
P: (56.136,-53.352,108.576)
C4': (58.117,-56.518,108.796)
C2': (58.467,-58.621,109.858)
C2: (56.514,-60.827,113.595)
N1: (55.251,-60.734,114.006)
N3: (57.168,-60.034,112.774)
N6: (53.264,-59.567,113.984)
N7: (54.614,-57.647,112.121)
N9: (56.687,-57.991,111.492)
O5': (57.386,-54.269,108.282)
O3': (58.967,-58.349,107.465)
OP2: (55.081,-54.108,109.277)
C3': (58.084,-58.000,108.511)
C1': (57.938,-57.600,110.848)
C5': (57.240,-55.642,107.928)
O4': (57.704,-56.407,110.169)
C8: (55.600,-57.195,111.406)
O2': (59.878,-58.677,110.010)
C6: (54.510,-59.701,113.570)
C5: (55.099,-58.792,112.712)
C4: (56.398,-59.015,112.363)
P: (56.136,-53.352,108.576)
C4': (58.117,-56.518,108.796)
C2': (58.467,-58.621,109.858)
C2: (56.514,-60.827,113.595)
N1: (55.251,-60.734,114.006)
N3: (57.168,-60.034,112.774)
N6: (53.264,-59.567,113.984)
N7: (54.614,-57.647,112.121)
N9: (56.687,-57.991,111.492)
O5': (57.386,-54.269,108.282)
O3': (58.967,-58.349,107.465)
Image (generated by PyMOL):