Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OHJ:A1309:A1320
Extra
PDB:
ATOM 1 O3' A A1308 38.632 -29.383 -59.046 1.00 79.62 O
ATOM 2 P A A1309 39.785 -28.671 -59.907 1.00 81.60 P
ATOM 3 OP1 A A1309 39.443 -28.863 -61.338 1.00 75.89 O
ATOM 4 OP2 A A1309 41.098 -29.198 -59.403 1.00 88.55 O
ATOM 5 O5' A A1309 39.620 -27.137 -59.513 1.00 52.31 O
ATOM 6 C5' A A1309 38.711 -26.317 -60.213 1.00 54.29 C
ATOM 7 C4' A A1309 38.842 -24.877 -59.821 1.00 48.87 C
ATOM 8 O4' A A1309 38.567 -24.719 -58.411 1.00 60.65 O
ATOM 9 C3' A A1309 40.210 -24.271 -59.971 1.00 46.78 C
ATOM 10 O3' A A1309 40.547 -23.981 -61.307 1.00 44.97 O
ATOM 11 C2' A A1309 40.111 -23.051 -59.062 1.00 50.90 C
ATOM 12 O2' A A1309 39.340 -22.025 -59.658 1.00 40.42 O
ATOM 13 C1' A A1309 39.311 -23.631 -57.902 1.00 54.52 C
ATOM 14 N9 A A1309 40.197 -24.125 -56.842 1.00 57.26 N
ATOM 15 C8 A A1309 40.798 -25.355 -56.723 1.00 58.40 C
ATOM 16 N7 A A1309 41.570 -25.454 -55.674 1.00 52.15 N
ATOM 17 C5 A A1309 41.462 -24.203 -55.093 1.00 56.74 C
ATOM 18 C6 A A1309 42.032 -23.665 -53.936 1.00 66.24 C
ATOM 19 N6 A A1309 42.860 -24.371 -53.147 1.00 62.94 N
ATOM 20 N1 A A1309 41.721 -22.377 -53.629 1.00 64.74 N
ATOM 21 C2 A A1309 40.887 -21.704 -54.437 1.00 62.24 C
ATOM 22 N3 A A1309 40.285 -22.113 -55.549 1.00 53.66 N
ATOM 23 C4 A A1309 40.628 -23.376 -55.806 1.00 50.53 C
ATOM 24 P G A1310 41.994 -24.379 -61.869 1.00 61.26 P
ATOM 25 OP1 G A1310 42.163 -23.657 -63.150 1.00 66.60 O
ATOM 26 OP2 G A1310 42.088 -25.859 -61.861 1.00 56.61 O
ATOM 27 O5' G A1310 42.977 -23.771 -60.776 1.00 57.06 O
TER
ATOM 1 O3' C B1319 48.515 -26.634 -46.241 1.00 33.60 O
ATOM 2 P G B1320 47.081 -26.368 -45.635 1.00 44.91 P
ATOM 3 OP1 G B1320 47.226 -25.281 -44.614 1.00 36.74 O
ATOM 4 OP2 G B1320 46.530 -27.682 -45.211 1.00 37.13 O
ATOM 5 O5' G B1320 46.288 -25.829 -46.899 1.00 46.60 O
ATOM 6 C5' G B1320 46.441 -24.485 -47.329 1.00 47.45 C
ATOM 7 C4' G B1320 45.531 -24.156 -48.492 1.00 45.45 C
ATOM 8 O4' G B1320 45.884 -24.953 -49.652 1.00 48.59 O
ATOM 9 C3' G B1320 44.059 -24.426 -48.291 1.00 43.24 C
ATOM 10 O3' G B1320 43.427 -23.398 -47.544 1.00 54.97 O
ATOM 11 C2' G B1320 43.562 -24.540 -49.728 1.00 46.74 C
ATOM 12 O2' G B1320 43.445 -23.248 -50.312 1.00 44.81 O
ATOM 13 C1' G B1320 44.735 -25.247 -50.400 1.00 40.45 C
ATOM 14 N9 G B1320 44.590 -26.707 -50.423 1.00 42.02 N
ATOM 15 C8 G B1320 45.164 -27.533 -49.502 1.00 50.16 C
ATOM 16 N7 G B1320 44.964 -28.796 -49.717 1.00 49.12 N
ATOM 17 C5 G B1320 44.226 -28.795 -50.877 1.00 45.50 C
ATOM 18 C6 G B1320 43.719 -29.897 -51.589 1.00 49.06 C
ATOM 19 O6 G B1320 43.841 -31.102 -51.294 1.00 49.82 O
ATOM 20 N1 G B1320 43.031 -29.475 -52.728 1.00 51.89 N
ATOM 21 C2 G B1320 42.851 -28.165 -53.112 1.00 54.95 C
ATOM 22 N2 G B1320 42.144 -27.955 -54.235 1.00 52.08 N
ATOM 23 N3 G B1320 43.331 -27.131 -52.441 1.00 57.83 N
ATOM 24 C4 G B1320 44.002 -27.521 -51.342 1.00 47.46 C
ATOM 25 P U B1321 41.938 -23.597 -46.976 1.00 58.72 P
ATOM 26 OP1 U B1321 41.894 -23.002 -45.620 1.00 55.01 O
ATOM 27 OP2 U B1321 41.615 -25.034 -47.133 1.00 56.56 O
ATOM 28 O5' U B1321 41.063 -22.726 -47.978 1.00 93.59 O
TER
ATOM 2 P A A1309 39.785 -28.671 -59.907 1.00 81.60 P
ATOM 3 OP1 A A1309 39.443 -28.863 -61.338 1.00 75.89 O
ATOM 4 OP2 A A1309 41.098 -29.198 -59.403 1.00 88.55 O
ATOM 5 O5' A A1309 39.620 -27.137 -59.513 1.00 52.31 O
ATOM 6 C5' A A1309 38.711 -26.317 -60.213 1.00 54.29 C
ATOM 7 C4' A A1309 38.842 -24.877 -59.821 1.00 48.87 C
ATOM 8 O4' A A1309 38.567 -24.719 -58.411 1.00 60.65 O
ATOM 9 C3' A A1309 40.210 -24.271 -59.971 1.00 46.78 C
ATOM 10 O3' A A1309 40.547 -23.981 -61.307 1.00 44.97 O
ATOM 11 C2' A A1309 40.111 -23.051 -59.062 1.00 50.90 C
ATOM 12 O2' A A1309 39.340 -22.025 -59.658 1.00 40.42 O
ATOM 13 C1' A A1309 39.311 -23.631 -57.902 1.00 54.52 C
ATOM 14 N9 A A1309 40.197 -24.125 -56.842 1.00 57.26 N
ATOM 15 C8 A A1309 40.798 -25.355 -56.723 1.00 58.40 C
ATOM 16 N7 A A1309 41.570 -25.454 -55.674 1.00 52.15 N
ATOM 17 C5 A A1309 41.462 -24.203 -55.093 1.00 56.74 C
ATOM 18 C6 A A1309 42.032 -23.665 -53.936 1.00 66.24 C
ATOM 19 N6 A A1309 42.860 -24.371 -53.147 1.00 62.94 N
ATOM 20 N1 A A1309 41.721 -22.377 -53.629 1.00 64.74 N
ATOM 21 C2 A A1309 40.887 -21.704 -54.437 1.00 62.24 C
ATOM 22 N3 A A1309 40.285 -22.113 -55.549 1.00 53.66 N
ATOM 23 C4 A A1309 40.628 -23.376 -55.806 1.00 50.53 C
ATOM 24 P G A1310 41.994 -24.379 -61.869 1.00 61.26 P
ATOM 25 OP1 G A1310 42.163 -23.657 -63.150 1.00 66.60 O
ATOM 26 OP2 G A1310 42.088 -25.859 -61.861 1.00 56.61 O
ATOM 27 O5' G A1310 42.977 -23.771 -60.776 1.00 57.06 O
TER
ATOM 1 O3' C B1319 48.515 -26.634 -46.241 1.00 33.60 O
ATOM 2 P G B1320 47.081 -26.368 -45.635 1.00 44.91 P
ATOM 3 OP1 G B1320 47.226 -25.281 -44.614 1.00 36.74 O
ATOM 4 OP2 G B1320 46.530 -27.682 -45.211 1.00 37.13 O
ATOM 5 O5' G B1320 46.288 -25.829 -46.899 1.00 46.60 O
ATOM 6 C5' G B1320 46.441 -24.485 -47.329 1.00 47.45 C
ATOM 7 C4' G B1320 45.531 -24.156 -48.492 1.00 45.45 C
ATOM 8 O4' G B1320 45.884 -24.953 -49.652 1.00 48.59 O
ATOM 9 C3' G B1320 44.059 -24.426 -48.291 1.00 43.24 C
ATOM 10 O3' G B1320 43.427 -23.398 -47.544 1.00 54.97 O
ATOM 11 C2' G B1320 43.562 -24.540 -49.728 1.00 46.74 C
ATOM 12 O2' G B1320 43.445 -23.248 -50.312 1.00 44.81 O
ATOM 13 C1' G B1320 44.735 -25.247 -50.400 1.00 40.45 C
ATOM 14 N9 G B1320 44.590 -26.707 -50.423 1.00 42.02 N
ATOM 15 C8 G B1320 45.164 -27.533 -49.502 1.00 50.16 C
ATOM 16 N7 G B1320 44.964 -28.796 -49.717 1.00 49.12 N
ATOM 17 C5 G B1320 44.226 -28.795 -50.877 1.00 45.50 C
ATOM 18 C6 G B1320 43.719 -29.897 -51.589 1.00 49.06 C
ATOM 19 O6 G B1320 43.841 -31.102 -51.294 1.00 49.82 O
ATOM 20 N1 G B1320 43.031 -29.475 -52.728 1.00 51.89 N
ATOM 21 C2 G B1320 42.851 -28.165 -53.112 1.00 54.95 C
ATOM 22 N2 G B1320 42.144 -27.955 -54.235 1.00 52.08 N
ATOM 23 N3 G B1320 43.331 -27.131 -52.441 1.00 57.83 N
ATOM 24 C4 G B1320 44.002 -27.521 -51.342 1.00 47.46 C
ATOM 25 P U B1321 41.938 -23.597 -46.976 1.00 58.72 P
ATOM 26 OP1 U B1321 41.894 -23.002 -45.620 1.00 55.01 O
ATOM 27 OP2 U B1321 41.615 -25.034 -47.133 1.00 56.56 O
ATOM 28 O5' U B1321 41.063 -22.726 -47.978 1.00 93.59 O
TER
Atoms:
OP1: (39.443,-28.863,-61.338)
OP2: (41.098,-29.198,-59.403)
C3': (40.210,-24.271,-59.971)
C1': (39.311,-23.631,-57.902)
C5': (38.711,-26.317,-60.213)
O4': (38.567,-24.719,-58.411)
C8: (40.798,-25.355,-56.723)
O2': (39.340,-22.025,-59.658)
C6: (42.032,-23.665,-53.936)
C5: (41.462,-24.203,-55.093)
C4: (40.628,-23.376,-55.806)
P: (39.785,-28.671,-59.907)
C4': (38.842,-24.877,-59.821)
C2': (40.111,-23.051,-59.062)
C2: (40.887,-21.704,-54.437)
N1: (41.721,-22.377,-53.629)
N3: (40.285,-22.113,-55.549)
N6: (42.860,-24.371,-53.147)
N7: (41.570,-25.454,-55.674)
N9: (40.197,-24.125,-56.842)
O5': (39.620,-27.137,-59.513)
O3': (40.547,-23.981,-61.307)
OP2: (41.098,-29.198,-59.403)
C3': (40.210,-24.271,-59.971)
C1': (39.311,-23.631,-57.902)
C5': (38.711,-26.317,-60.213)
O4': (38.567,-24.719,-58.411)
C8: (40.798,-25.355,-56.723)
O2': (39.340,-22.025,-59.658)
C6: (42.032,-23.665,-53.936)
C5: (41.462,-24.203,-55.093)
C4: (40.628,-23.376,-55.806)
P: (39.785,-28.671,-59.907)
C4': (38.842,-24.877,-59.821)
C2': (40.111,-23.051,-59.062)
C2: (40.887,-21.704,-54.437)
N1: (41.721,-22.377,-53.629)
N3: (40.285,-22.113,-55.549)
N6: (42.860,-24.371,-53.147)
N7: (41.570,-25.454,-55.674)
N9: (40.197,-24.125,-56.842)
O5': (39.620,-27.137,-59.513)
O3': (40.547,-23.981,-61.307)
OP1: (47.226,-25.281,-44.614)
OP2: (46.530,-27.682,-45.211)
C3': (44.059,-24.426,-48.291)
C1': (44.735,-25.247,-50.400)
C5': (46.441,-24.485,-47.329)
O6: (43.841,-31.102,-51.294)
O4': (45.884,-24.953,-49.652)
C8: (45.164,-27.533,-49.502)
C2: (42.851,-28.165,-53.112)
C6: (43.719,-29.897,-51.589)
C5: (44.226,-28.795,-50.877)
C4: (44.002,-27.521,-51.342)
P: (47.081,-26.368,-45.635)
C4': (45.531,-24.156,-48.492)
C2': (43.562,-24.540,-49.728)
O2': (43.445,-23.248,-50.312)
N1: (43.031,-29.475,-52.728)
N2: (42.144,-27.955,-54.235)
N3: (43.331,-27.131,-52.441)
N7: (44.964,-28.796,-49.717)
N9: (44.590,-26.707,-50.423)
O5': (46.288,-25.829,-46.899)
O3': (43.427,-23.398,-47.544)
OP2: (46.530,-27.682,-45.211)
C3': (44.059,-24.426,-48.291)
C1': (44.735,-25.247,-50.400)
C5': (46.441,-24.485,-47.329)
O6: (43.841,-31.102,-51.294)
O4': (45.884,-24.953,-49.652)
C8: (45.164,-27.533,-49.502)
C2: (42.851,-28.165,-53.112)
C6: (43.719,-29.897,-51.589)
C5: (44.226,-28.795,-50.877)
C4: (44.002,-27.521,-51.342)
P: (47.081,-26.368,-45.635)
C4': (45.531,-24.156,-48.492)
C2': (43.562,-24.540,-49.728)
O2': (43.445,-23.248,-50.312)
N1: (43.031,-29.475,-52.728)
N2: (42.144,-27.955,-54.235)
N3: (43.331,-27.131,-52.441)
N7: (44.964,-28.796,-49.717)
N9: (44.590,-26.707,-50.423)
O5': (46.288,-25.829,-46.899)
O3': (43.427,-23.398,-47.544)
Image (generated by PyMOL):