Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OH5:A2054:A2038
Extra
PDB:
ATOM 1 O3' G A2053 60.484 0.312 -54.688 1.00 33.58 O
ATOM 2 P G A2054 61.494 0.926 -55.758 1.00 51.21 P
ATOM 3 OP1 G A2054 62.836 0.889 -55.162 1.00 55.12 O
ATOM 4 OP2 G A2054 60.932 2.229 -56.177 1.00 59.88 O
ATOM 5 O5' G A2054 61.421 -0.112 -56.957 1.00 41.32 O
ATOM 6 C5' G A2054 61.917 -1.419 -56.792 1.00 39.34 C
ATOM 7 C4' G A2054 61.949 -2.159 -58.093 1.00 45.91 C
ATOM 8 O4' G A2054 60.602 -2.414 -58.548 1.00 49.97 O
ATOM 9 C3' G A2054 62.597 -1.431 -59.247 1.00 47.51 C
ATOM 10 O3' G A2054 64.003 -1.520 -59.223 1.00 47.31 O
ATOM 11 C2' G A2054 61.968 -2.097 -60.459 1.00 48.71 C
ATOM 12 O2' G A2054 62.612 -3.326 -60.750 1.00 40.74 O
ATOM 13 C1' G A2054 60.556 -2.390 -59.947 1.00 45.77 C
ATOM 14 N9 G A2054 59.608 -1.350 -60.331 1.00 49.32 N
ATOM 15 C8 G A2054 59.319 -0.253 -59.586 1.00 48.32 C
ATOM 16 N7 G A2054 58.427 0.492 -60.167 1.00 60.03 N
ATOM 17 C5 G A2054 58.105 -0.157 -61.351 1.00 59.61 C
ATOM 18 C6 G A2054 57.191 0.179 -62.396 1.00 64.22 C
ATOM 19 O6 G A2054 56.441 1.166 -62.490 1.00 69.58 O
ATOM 20 N1 G A2054 57.202 -0.779 -63.407 1.00 57.18 N
ATOM 21 C2 G A2054 57.992 -1.908 -63.405 1.00 55.91 C
ATOM 22 N2 G A2054 57.892 -2.737 -64.448 1.00 55.77 N
ATOM 23 N3 G A2054 58.831 -2.225 -62.443 1.00 59.94 N
ATOM 24 C4 G A2054 58.834 -1.312 -61.454 1.00 57.13 C
ATOM 25 P A A2055 64.873 -0.481 -60.062 1.00 53.93 P
ATOM 26 OP1 A A2055 66.294 -0.666 -59.655 1.00 46.19 O
ATOM 27 OP2 A A2055 64.242 0.858 -59.887 1.00 45.60 O
ATOM 28 O5' A A2055 64.663 -0.984 -61.539 1.00 30.29 O
TER
ATOM 1 O3' U B2037 54.487 0.635 -67.874 1.00 55.76 O
ATOM 2 P A B2038 53.039 -0.072 -67.752 1.00 57.08 P
ATOM 3 OP1 A B2038 52.025 0.908 -68.197 1.00 81.30 O
ATOM 4 OP2 A B2038 52.923 -0.637 -66.405 1.00 73.88 O
ATOM 5 O5' A B2038 53.171 -1.235 -68.811 1.00 60.80 O
ATOM 6 C5' A B2038 52.744 -2.549 -68.515 1.00 57.89 C
ATOM 7 C4' A B2038 53.878 -3.535 -68.621 1.00 57.84 C
ATOM 8 O4' A B2038 54.798 -3.114 -69.679 1.00 55.89 O
ATOM 9 C3' A B2038 54.729 -3.667 -67.355 1.00 51.49 C
ATOM 10 O3' A B2038 55.262 -4.980 -67.283 1.00 46.98 O
ATOM 11 C2' A B2038 55.868 -2.725 -67.663 1.00 55.82 C
ATOM 12 O2' A B2038 57.033 -2.941 -66.901 1.00 62.78 O
ATOM 13 C1' A B2038 56.089 -3.052 -69.130 1.00 55.76 C
ATOM 14 N9 A B2038 56.888 -2.060 -69.824 1.00 55.35 N
ATOM 15 C8 A B2038 56.731 -0.708 -69.800 1.00 59.50 C
ATOM 16 N7 A B2038 57.705 -0.099 -70.438 1.00 73.01 N
ATOM 17 C5 A B2038 58.576 -1.107 -70.856 1.00 58.11 C
ATOM 18 C6 A B2038 59.796 -1.105 -71.572 1.00 54.38 C
ATOM 19 N6 A B2038 60.384 -0.003 -72.033 1.00 58.76 N
ATOM 20 N1 A B2038 60.396 -2.286 -71.814 1.00 56.00 N
ATOM 21 C2 A B2038 59.795 -3.385 -71.352 1.00 58.84 C
ATOM 22 N3 A B2038 58.651 -3.508 -70.672 1.00 56.71 N
ATOM 23 C4 A B2038 58.082 -2.322 -70.453 1.00 52.68 C
ATOM 24 P A B2039 54.479 -6.182 -66.568 1.00 47.34 P
ATOM 25 OP1 A B2039 53.024 -5.953 -66.718 1.00 53.89 O
ATOM 26 OP2 A B2039 55.037 -6.328 -65.211 1.00 48.87 O
ATOM 27 O5' A B2039 54.923 -7.391 -67.469 1.00 49.22 O
TER
ATOM 2 P G A2054 61.494 0.926 -55.758 1.00 51.21 P
ATOM 3 OP1 G A2054 62.836 0.889 -55.162 1.00 55.12 O
ATOM 4 OP2 G A2054 60.932 2.229 -56.177 1.00 59.88 O
ATOM 5 O5' G A2054 61.421 -0.112 -56.957 1.00 41.32 O
ATOM 6 C5' G A2054 61.917 -1.419 -56.792 1.00 39.34 C
ATOM 7 C4' G A2054 61.949 -2.159 -58.093 1.00 45.91 C
ATOM 8 O4' G A2054 60.602 -2.414 -58.548 1.00 49.97 O
ATOM 9 C3' G A2054 62.597 -1.431 -59.247 1.00 47.51 C
ATOM 10 O3' G A2054 64.003 -1.520 -59.223 1.00 47.31 O
ATOM 11 C2' G A2054 61.968 -2.097 -60.459 1.00 48.71 C
ATOM 12 O2' G A2054 62.612 -3.326 -60.750 1.00 40.74 O
ATOM 13 C1' G A2054 60.556 -2.390 -59.947 1.00 45.77 C
ATOM 14 N9 G A2054 59.608 -1.350 -60.331 1.00 49.32 N
ATOM 15 C8 G A2054 59.319 -0.253 -59.586 1.00 48.32 C
ATOM 16 N7 G A2054 58.427 0.492 -60.167 1.00 60.03 N
ATOM 17 C5 G A2054 58.105 -0.157 -61.351 1.00 59.61 C
ATOM 18 C6 G A2054 57.191 0.179 -62.396 1.00 64.22 C
ATOM 19 O6 G A2054 56.441 1.166 -62.490 1.00 69.58 O
ATOM 20 N1 G A2054 57.202 -0.779 -63.407 1.00 57.18 N
ATOM 21 C2 G A2054 57.992 -1.908 -63.405 1.00 55.91 C
ATOM 22 N2 G A2054 57.892 -2.737 -64.448 1.00 55.77 N
ATOM 23 N3 G A2054 58.831 -2.225 -62.443 1.00 59.94 N
ATOM 24 C4 G A2054 58.834 -1.312 -61.454 1.00 57.13 C
ATOM 25 P A A2055 64.873 -0.481 -60.062 1.00 53.93 P
ATOM 26 OP1 A A2055 66.294 -0.666 -59.655 1.00 46.19 O
ATOM 27 OP2 A A2055 64.242 0.858 -59.887 1.00 45.60 O
ATOM 28 O5' A A2055 64.663 -0.984 -61.539 1.00 30.29 O
TER
ATOM 1 O3' U B2037 54.487 0.635 -67.874 1.00 55.76 O
ATOM 2 P A B2038 53.039 -0.072 -67.752 1.00 57.08 P
ATOM 3 OP1 A B2038 52.025 0.908 -68.197 1.00 81.30 O
ATOM 4 OP2 A B2038 52.923 -0.637 -66.405 1.00 73.88 O
ATOM 5 O5' A B2038 53.171 -1.235 -68.811 1.00 60.80 O
ATOM 6 C5' A B2038 52.744 -2.549 -68.515 1.00 57.89 C
ATOM 7 C4' A B2038 53.878 -3.535 -68.621 1.00 57.84 C
ATOM 8 O4' A B2038 54.798 -3.114 -69.679 1.00 55.89 O
ATOM 9 C3' A B2038 54.729 -3.667 -67.355 1.00 51.49 C
ATOM 10 O3' A B2038 55.262 -4.980 -67.283 1.00 46.98 O
ATOM 11 C2' A B2038 55.868 -2.725 -67.663 1.00 55.82 C
ATOM 12 O2' A B2038 57.033 -2.941 -66.901 1.00 62.78 O
ATOM 13 C1' A B2038 56.089 -3.052 -69.130 1.00 55.76 C
ATOM 14 N9 A B2038 56.888 -2.060 -69.824 1.00 55.35 N
ATOM 15 C8 A B2038 56.731 -0.708 -69.800 1.00 59.50 C
ATOM 16 N7 A B2038 57.705 -0.099 -70.438 1.00 73.01 N
ATOM 17 C5 A B2038 58.576 -1.107 -70.856 1.00 58.11 C
ATOM 18 C6 A B2038 59.796 -1.105 -71.572 1.00 54.38 C
ATOM 19 N6 A B2038 60.384 -0.003 -72.033 1.00 58.76 N
ATOM 20 N1 A B2038 60.396 -2.286 -71.814 1.00 56.00 N
ATOM 21 C2 A B2038 59.795 -3.385 -71.352 1.00 58.84 C
ATOM 22 N3 A B2038 58.651 -3.508 -70.672 1.00 56.71 N
ATOM 23 C4 A B2038 58.082 -2.322 -70.453 1.00 52.68 C
ATOM 24 P A B2039 54.479 -6.182 -66.568 1.00 47.34 P
ATOM 25 OP1 A B2039 53.024 -5.953 -66.718 1.00 53.89 O
ATOM 26 OP2 A B2039 55.037 -6.328 -65.211 1.00 48.87 O
ATOM 27 O5' A B2039 54.923 -7.391 -67.469 1.00 49.22 O
TER
Atoms:
OP1: (62.836,0.889,-55.162)
OP2: (60.932,2.229,-56.177)
C3': (62.597,-1.431,-59.247)
C1': (60.556,-2.390,-59.947)
C5': (61.917,-1.419,-56.792)
O6: (56.441,1.166,-62.490)
O4': (60.602,-2.414,-58.548)
C8: (59.319,-0.253,-59.586)
C2: (57.992,-1.908,-63.405)
C6: (57.191,0.179,-62.396)
C5: (58.105,-0.157,-61.351)
C4: (58.834,-1.312,-61.454)
P: (61.494,0.926,-55.758)
C4': (61.949,-2.159,-58.093)
C2': (61.968,-2.097,-60.459)
O2': (62.612,-3.326,-60.750)
N1: (57.202,-0.779,-63.407)
N2: (57.892,-2.737,-64.448)
N3: (58.831,-2.225,-62.443)
N7: (58.427,0.492,-60.167)
N9: (59.608,-1.350,-60.331)
O5': (61.421,-0.112,-56.957)
O3': (64.003,-1.520,-59.223)
OP2: (60.932,2.229,-56.177)
C3': (62.597,-1.431,-59.247)
C1': (60.556,-2.390,-59.947)
C5': (61.917,-1.419,-56.792)
O6: (56.441,1.166,-62.490)
O4': (60.602,-2.414,-58.548)
C8: (59.319,-0.253,-59.586)
C2: (57.992,-1.908,-63.405)
C6: (57.191,0.179,-62.396)
C5: (58.105,-0.157,-61.351)
C4: (58.834,-1.312,-61.454)
P: (61.494,0.926,-55.758)
C4': (61.949,-2.159,-58.093)
C2': (61.968,-2.097,-60.459)
O2': (62.612,-3.326,-60.750)
N1: (57.202,-0.779,-63.407)
N2: (57.892,-2.737,-64.448)
N3: (58.831,-2.225,-62.443)
N7: (58.427,0.492,-60.167)
N9: (59.608,-1.350,-60.331)
O5': (61.421,-0.112,-56.957)
O3': (64.003,-1.520,-59.223)
OP1: (52.025,0.908,-68.197)
OP2: (52.923,-0.637,-66.405)
C3': (54.729,-3.667,-67.355)
C1': (56.089,-3.052,-69.130)
C5': (52.744,-2.549,-68.515)
O4': (54.798,-3.114,-69.679)
C8: (56.731,-0.708,-69.800)
O2': (57.033,-2.941,-66.901)
C6: (59.796,-1.105,-71.572)
C5: (58.576,-1.107,-70.856)
C4: (58.082,-2.322,-70.453)
P: (53.039,-0.072,-67.752)
C4': (53.878,-3.535,-68.621)
C2': (55.868,-2.725,-67.663)
C2: (59.795,-3.385,-71.352)
N1: (60.396,-2.286,-71.814)
N3: (58.651,-3.508,-70.672)
N6: (60.384,-0.003,-72.033)
N7: (57.705,-0.099,-70.438)
N9: (56.888,-2.060,-69.824)
O5': (53.171,-1.235,-68.811)
O3': (55.262,-4.980,-67.283)
OP2: (52.923,-0.637,-66.405)
C3': (54.729,-3.667,-67.355)
C1': (56.089,-3.052,-69.130)
C5': (52.744,-2.549,-68.515)
O4': (54.798,-3.114,-69.679)
C8: (56.731,-0.708,-69.800)
O2': (57.033,-2.941,-66.901)
C6: (59.796,-1.105,-71.572)
C5: (58.576,-1.107,-70.856)
C4: (58.082,-2.322,-70.453)
P: (53.039,-0.072,-67.752)
C4': (53.878,-3.535,-68.621)
C2': (55.868,-2.725,-67.663)
C2: (59.795,-3.385,-71.352)
N1: (60.396,-2.286,-71.814)
N3: (58.651,-3.508,-70.672)
N6: (60.384,-0.003,-72.033)
N7: (57.705,-0.099,-70.438)
N9: (56.888,-2.060,-69.824)
O5': (53.171,-1.235,-68.811)
O3': (55.262,-4.980,-67.283)
Image (generated by PyMOL):