Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OHJ:A2054:A2038
Extra
PDB:
ATOM 1 O3' G A2053 60.801 0.490 -54.680 1.00 40.03 O
ATOM 2 P G A2054 61.731 1.262 -55.714 1.00 49.16 P
ATOM 3 OP1 G A2054 63.031 1.466 -55.066 1.00 57.94 O
ATOM 4 OP2 G A2054 60.972 2.449 -56.159 1.00 62.02 O
ATOM 5 O5' G A2054 61.874 0.217 -56.917 1.00 34.99 O
ATOM 6 C5' G A2054 62.323 -1.103 -56.685 1.00 33.63 C
ATOM 7 C4' G A2054 62.336 -1.922 -57.953 1.00 43.25 C
ATOM 8 O4' G A2054 60.981 -2.232 -58.366 1.00 48.83 O
ATOM 9 C3' G A2054 62.952 -1.262 -59.162 1.00 42.36 C
ATOM 10 O3' G A2054 64.353 -1.350 -59.157 1.00 42.59 O
ATOM 11 C2' G A2054 62.290 -1.999 -60.326 1.00 47.70 C
ATOM 12 O2' G A2054 62.918 -3.245 -60.574 1.00 41.18 O
ATOM 13 C1' G A2054 60.895 -2.265 -59.768 1.00 42.90 C
ATOM 14 N9 G A2054 59.941 -1.233 -60.176 1.00 49.40 N
ATOM 15 C8 G A2054 59.647 -0.144 -59.414 1.00 51.99 C
ATOM 16 N7 G A2054 58.774 0.636 -59.977 1.00 58.33 N
ATOM 17 C5 G A2054 58.479 0.015 -61.173 1.00 60.34 C
ATOM 18 C6 G A2054 57.586 0.413 -62.193 1.00 64.87 C
ATOM 19 O6 G A2054 56.878 1.430 -62.209 1.00 65.17 O
ATOM 20 N1 G A2054 57.587 -0.501 -63.249 1.00 56.61 N
ATOM 21 C2 G A2054 58.346 -1.638 -63.289 1.00 47.62 C
ATOM 22 N2 G A2054 58.221 -2.408 -64.362 1.00 49.13 N
ATOM 23 N3 G A2054 59.165 -2.013 -62.341 1.00 52.65 N
ATOM 24 C4 G A2054 59.187 -1.149 -61.315 1.00 53.99 C
ATOM 25 P A A2055 65.228 -0.370 -60.058 1.00 48.64 P
ATOM 26 OP1 A A2055 66.638 -0.509 -59.604 1.00 46.19 O
ATOM 27 OP2 A A2055 64.581 0.966 -60.002 1.00 41.60 O
ATOM 28 O5' A A2055 65.078 -0.997 -61.498 1.00 34.08 O
TER
ATOM 1 O3' U B2037 54.770 0.906 -67.857 1.00 55.07 O
ATOM 2 P A B2038 53.249 0.372 -67.836 1.00 63.88 P
ATOM 3 OP1 A B2038 52.403 1.427 -68.438 1.00 84.75 O
ATOM 4 OP2 A B2038 52.948 -0.081 -66.458 1.00 72.84 O
ATOM 5 O5' A B2038 53.323 -0.873 -68.807 1.00 56.91 O
ATOM 6 C5' A B2038 52.976 -2.169 -68.353 1.00 54.01 C
ATOM 7 C4' A B2038 54.081 -3.174 -68.593 1.00 55.56 C
ATOM 8 O4' A B2038 55.001 -2.685 -69.626 1.00 50.40 O
ATOM 9 C3' A B2038 54.951 -3.479 -67.370 1.00 51.04 C
ATOM 10 O3' A B2038 55.397 -4.822 -67.454 1.00 51.21 O
ATOM 11 C2' A B2038 56.138 -2.573 -67.614 1.00 55.08 C
ATOM 12 O2' A B2038 57.309 -2.923 -66.911 1.00 56.35 O
ATOM 13 C1' A B2038 56.306 -2.758 -69.110 1.00 50.97 C
ATOM 14 N9 A B2038 57.155 -1.753 -69.716 1.00 50.82 N
ATOM 15 C8 A B2038 57.109 -0.401 -69.550 1.00 52.34 C
ATOM 16 N7 A B2038 58.119 0.192 -70.154 1.00 64.57 N
ATOM 17 C5 A B2038 58.900 -0.838 -70.687 1.00 52.44 C
ATOM 18 C6 A B2038 60.104 -0.857 -71.418 1.00 46.20 C
ATOM 19 N6 A B2038 60.781 0.231 -71.791 1.00 51.82 N
ATOM 20 N1 A B2038 60.593 -2.060 -71.771 1.00 52.77 N
ATOM 21 C2 A B2038 59.909 -3.153 -71.410 1.00 53.68 C
ATOM 22 N3 A B2038 58.770 -3.255 -70.733 1.00 46.19 N
ATOM 23 C4 A B2038 58.315 -2.048 -70.394 1.00 49.72 C
ATOM 24 P A B2039 54.815 -5.973 -66.492 1.00 55.37 P
ATOM 25 OP1 A B2039 53.379 -5.699 -66.247 1.00 66.43 O
ATOM 26 OP2 A B2039 55.714 -6.076 -65.335 1.00 59.25 O
ATOM 27 O5' A B2039 54.974 -7.239 -67.415 1.00 47.05 O
TER
ATOM 2 P G A2054 61.731 1.262 -55.714 1.00 49.16 P
ATOM 3 OP1 G A2054 63.031 1.466 -55.066 1.00 57.94 O
ATOM 4 OP2 G A2054 60.972 2.449 -56.159 1.00 62.02 O
ATOM 5 O5' G A2054 61.874 0.217 -56.917 1.00 34.99 O
ATOM 6 C5' G A2054 62.323 -1.103 -56.685 1.00 33.63 C
ATOM 7 C4' G A2054 62.336 -1.922 -57.953 1.00 43.25 C
ATOM 8 O4' G A2054 60.981 -2.232 -58.366 1.00 48.83 O
ATOM 9 C3' G A2054 62.952 -1.262 -59.162 1.00 42.36 C
ATOM 10 O3' G A2054 64.353 -1.350 -59.157 1.00 42.59 O
ATOM 11 C2' G A2054 62.290 -1.999 -60.326 1.00 47.70 C
ATOM 12 O2' G A2054 62.918 -3.245 -60.574 1.00 41.18 O
ATOM 13 C1' G A2054 60.895 -2.265 -59.768 1.00 42.90 C
ATOM 14 N9 G A2054 59.941 -1.233 -60.176 1.00 49.40 N
ATOM 15 C8 G A2054 59.647 -0.144 -59.414 1.00 51.99 C
ATOM 16 N7 G A2054 58.774 0.636 -59.977 1.00 58.33 N
ATOM 17 C5 G A2054 58.479 0.015 -61.173 1.00 60.34 C
ATOM 18 C6 G A2054 57.586 0.413 -62.193 1.00 64.87 C
ATOM 19 O6 G A2054 56.878 1.430 -62.209 1.00 65.17 O
ATOM 20 N1 G A2054 57.587 -0.501 -63.249 1.00 56.61 N
ATOM 21 C2 G A2054 58.346 -1.638 -63.289 1.00 47.62 C
ATOM 22 N2 G A2054 58.221 -2.408 -64.362 1.00 49.13 N
ATOM 23 N3 G A2054 59.165 -2.013 -62.341 1.00 52.65 N
ATOM 24 C4 G A2054 59.187 -1.149 -61.315 1.00 53.99 C
ATOM 25 P A A2055 65.228 -0.370 -60.058 1.00 48.64 P
ATOM 26 OP1 A A2055 66.638 -0.509 -59.604 1.00 46.19 O
ATOM 27 OP2 A A2055 64.581 0.966 -60.002 1.00 41.60 O
ATOM 28 O5' A A2055 65.078 -0.997 -61.498 1.00 34.08 O
TER
ATOM 1 O3' U B2037 54.770 0.906 -67.857 1.00 55.07 O
ATOM 2 P A B2038 53.249 0.372 -67.836 1.00 63.88 P
ATOM 3 OP1 A B2038 52.403 1.427 -68.438 1.00 84.75 O
ATOM 4 OP2 A B2038 52.948 -0.081 -66.458 1.00 72.84 O
ATOM 5 O5' A B2038 53.323 -0.873 -68.807 1.00 56.91 O
ATOM 6 C5' A B2038 52.976 -2.169 -68.353 1.00 54.01 C
ATOM 7 C4' A B2038 54.081 -3.174 -68.593 1.00 55.56 C
ATOM 8 O4' A B2038 55.001 -2.685 -69.626 1.00 50.40 O
ATOM 9 C3' A B2038 54.951 -3.479 -67.370 1.00 51.04 C
ATOM 10 O3' A B2038 55.397 -4.822 -67.454 1.00 51.21 O
ATOM 11 C2' A B2038 56.138 -2.573 -67.614 1.00 55.08 C
ATOM 12 O2' A B2038 57.309 -2.923 -66.911 1.00 56.35 O
ATOM 13 C1' A B2038 56.306 -2.758 -69.110 1.00 50.97 C
ATOM 14 N9 A B2038 57.155 -1.753 -69.716 1.00 50.82 N
ATOM 15 C8 A B2038 57.109 -0.401 -69.550 1.00 52.34 C
ATOM 16 N7 A B2038 58.119 0.192 -70.154 1.00 64.57 N
ATOM 17 C5 A B2038 58.900 -0.838 -70.687 1.00 52.44 C
ATOM 18 C6 A B2038 60.104 -0.857 -71.418 1.00 46.20 C
ATOM 19 N6 A B2038 60.781 0.231 -71.791 1.00 51.82 N
ATOM 20 N1 A B2038 60.593 -2.060 -71.771 1.00 52.77 N
ATOM 21 C2 A B2038 59.909 -3.153 -71.410 1.00 53.68 C
ATOM 22 N3 A B2038 58.770 -3.255 -70.733 1.00 46.19 N
ATOM 23 C4 A B2038 58.315 -2.048 -70.394 1.00 49.72 C
ATOM 24 P A B2039 54.815 -5.973 -66.492 1.00 55.37 P
ATOM 25 OP1 A B2039 53.379 -5.699 -66.247 1.00 66.43 O
ATOM 26 OP2 A B2039 55.714 -6.076 -65.335 1.00 59.25 O
ATOM 27 O5' A B2039 54.974 -7.239 -67.415 1.00 47.05 O
TER
Atoms:
OP1: (63.031,1.466,-55.066)
OP2: (60.972,2.449,-56.159)
C3': (62.952,-1.262,-59.162)
C1': (60.895,-2.265,-59.768)
C5': (62.323,-1.103,-56.685)
O6: (56.878,1.430,-62.209)
O4': (60.981,-2.232,-58.366)
C8: (59.647,-0.144,-59.414)
C2: (58.346,-1.638,-63.289)
C6: (57.586,0.413,-62.193)
C5: (58.479,0.015,-61.173)
C4: (59.187,-1.149,-61.315)
P: (61.731,1.262,-55.714)
C4': (62.336,-1.922,-57.953)
C2': (62.290,-1.999,-60.326)
O2': (62.918,-3.245,-60.574)
N1: (57.587,-0.501,-63.249)
N2: (58.221,-2.408,-64.362)
N3: (59.165,-2.013,-62.341)
N7: (58.774,0.636,-59.977)
N9: (59.941,-1.233,-60.176)
O5': (61.874,0.217,-56.917)
O3': (64.353,-1.350,-59.157)
OP2: (60.972,2.449,-56.159)
C3': (62.952,-1.262,-59.162)
C1': (60.895,-2.265,-59.768)
C5': (62.323,-1.103,-56.685)
O6: (56.878,1.430,-62.209)
O4': (60.981,-2.232,-58.366)
C8: (59.647,-0.144,-59.414)
C2: (58.346,-1.638,-63.289)
C6: (57.586,0.413,-62.193)
C5: (58.479,0.015,-61.173)
C4: (59.187,-1.149,-61.315)
P: (61.731,1.262,-55.714)
C4': (62.336,-1.922,-57.953)
C2': (62.290,-1.999,-60.326)
O2': (62.918,-3.245,-60.574)
N1: (57.587,-0.501,-63.249)
N2: (58.221,-2.408,-64.362)
N3: (59.165,-2.013,-62.341)
N7: (58.774,0.636,-59.977)
N9: (59.941,-1.233,-60.176)
O5': (61.874,0.217,-56.917)
O3': (64.353,-1.350,-59.157)
OP1: (52.403,1.427,-68.438)
OP2: (52.948,-0.081,-66.458)
C3': (54.951,-3.479,-67.370)
C1': (56.306,-2.758,-69.110)
C5': (52.976,-2.169,-68.353)
O4': (55.001,-2.685,-69.626)
C8: (57.109,-0.401,-69.550)
O2': (57.309,-2.923,-66.911)
C6: (60.104,-0.857,-71.418)
C5: (58.900,-0.838,-70.687)
C4: (58.315,-2.048,-70.394)
P: (53.249,0.372,-67.836)
C4': (54.081,-3.174,-68.593)
C2': (56.138,-2.573,-67.614)
C2: (59.909,-3.153,-71.410)
N1: (60.593,-2.060,-71.771)
N3: (58.770,-3.255,-70.733)
N6: (60.781,0.231,-71.791)
N7: (58.119,0.192,-70.154)
N9: (57.155,-1.753,-69.716)
O5': (53.323,-0.873,-68.807)
O3': (55.397,-4.822,-67.454)
OP2: (52.948,-0.081,-66.458)
C3': (54.951,-3.479,-67.370)
C1': (56.306,-2.758,-69.110)
C5': (52.976,-2.169,-68.353)
O4': (55.001,-2.685,-69.626)
C8: (57.109,-0.401,-69.550)
O2': (57.309,-2.923,-66.911)
C6: (60.104,-0.857,-71.418)
C5: (58.900,-0.838,-70.687)
C4: (58.315,-2.048,-70.394)
P: (53.249,0.372,-67.836)
C4': (54.081,-3.174,-68.593)
C2': (56.138,-2.573,-67.614)
C2: (59.909,-3.153,-71.410)
N1: (60.593,-2.060,-71.771)
N3: (58.770,-3.255,-70.733)
N6: (60.781,0.231,-71.791)
N7: (58.119,0.192,-70.154)
N9: (57.155,-1.753,-69.716)
O5': (53.323,-0.873,-68.807)
O3': (55.397,-4.822,-67.454)
Image (generated by PyMOL):