Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0653:0219
Extra
PDB:
ATOM 1 O3' U A 652 40.393 97.694 34.304 1.00 45.64 O
ATOM 2 P A A 653 40.919 99.087 33.692 1.00 46.04 P
ATOM 3 OP1 A A 653 40.628 100.132 34.714 1.00 43.51 O
ATOM 4 OP2 A A 653 40.400 99.250 32.307 1.00 43.44 O
ATOM 5 O5' A A 653 42.497 98.879 33.610 1.00 42.99 O
ATOM 6 C5' A A 653 43.276 98.827 34.812 1.00 42.39 C
ATOM 7 C4' A A 653 44.743 98.975 34.507 1.00 41.98 C
ATOM 8 O4' A A 653 45.276 97.753 33.953 1.00 42.33 O
ATOM 9 C3' A A 653 45.124 100.039 33.501 1.00 42.02 C
ATOM 10 O3' A A 653 45.137 101.320 34.110 1.00 41.29 O
ATOM 11 C2' A A 653 46.516 99.588 33.084 1.00 42.94 C
ATOM 12 O2' A A 653 47.500 99.965 34.023 1.00 42.23 O
ATOM 13 C1' A A 653 46.360 98.062 33.098 1.00 43.30 C
ATOM 14 N9 A A 653 46.087 97.470 31.790 1.00 45.04 N
ATOM 15 C8 A A 653 44.875 97.069 31.283 1.00 45.96 C
ATOM 16 N7 A A 653 44.950 96.551 30.081 1.00 46.64 N
ATOM 17 C5 A A 653 46.300 96.617 29.776 1.00 46.07 C
ATOM 18 C6 A A 653 47.028 96.221 28.651 1.00 46.56 C
ATOM 19 N6 A A 653 46.480 95.645 27.584 1.00 47.43 N
ATOM 20 N1 A A 653 48.359 96.436 28.657 1.00 47.70 N
ATOM 21 C2 A A 653 48.908 97.008 29.734 1.00 47.39 C
ATOM 22 N3 A A 653 48.330 97.417 30.856 1.00 44.77 N
ATOM 23 C4 A A 653 47.010 97.191 30.814 1.00 45.07 C
ATOM 24 P A A 654 44.624 102.596 33.288 1.00 43.25 P
ATOM 25 OP1 A A 654 44.569 103.716 34.252 1.00 43.14 O
ATOM 26 OP2 A A 654 43.408 102.240 32.528 1.00 41.82 O
ATOM 27 O5' A A 654 45.809 102.875 32.258 1.00 42.69 O
TER
ATOM 1 O3' C B 218 53.657 91.408 23.443 1.00 45.88 O
ATOM 2 P G B 219 53.205 92.459 22.328 1.00 46.36 P
ATOM 3 OP1 G B 219 52.478 91.677 21.305 1.00 48.96 O
ATOM 4 OP2 G B 219 54.373 93.275 21.928 1.00 47.30 O
ATOM 5 O5' G B 219 52.162 93.381 23.093 1.00 44.00 O
ATOM 6 C5' G B 219 50.947 92.830 23.602 1.00 42.30 C
ATOM 7 C4' G B 219 50.223 93.853 24.428 1.00 43.11 C
ATOM 8 O4' G B 219 50.975 94.139 25.631 1.00 43.57 O
ATOM 9 C3' G B 219 50.080 95.201 23.763 1.00 43.25 C
ATOM 10 O3' G B 219 49.008 95.202 22.840 1.00 46.84 O
ATOM 11 C2' G B 219 49.876 96.130 24.951 1.00 42.12 C
ATOM 12 O2' G B 219 48.578 96.083 25.495 1.00 41.59 O
ATOM 13 C1' G B 219 50.826 95.507 25.967 1.00 42.49 C
ATOM 14 N9 G B 219 52.145 96.124 25.970 1.00 42.43 N
ATOM 15 C8 G B 219 53.314 95.595 25.479 1.00 41.36 C
ATOM 16 N7 G B 219 54.348 96.361 25.688 1.00 42.51 N
ATOM 17 C5 G B 219 53.828 97.470 26.345 1.00 41.86 C
ATOM 18 C6 G B 219 54.475 98.629 26.852 1.00 40.63 C
ATOM 19 O6 G B 219 55.676 98.919 26.817 1.00 38.45 O
ATOM 20 N1 G B 219 53.568 99.496 27.451 1.00 40.19 N
ATOM 21 C2 G B 219 52.217 99.282 27.548 1.00 41.01 C
ATOM 22 N2 G B 219 51.509 100.239 28.153 1.00 42.23 N
ATOM 23 N3 G B 219 51.604 98.209 27.085 1.00 41.33 N
ATOM 24 C4 G B 219 52.466 97.348 26.505 1.00 42.17 C
ATOM 25 P A B 220 48.933 96.355 21.724 1.00 49.00 P
ATOM 26 OP1 A B 220 47.618 96.262 21.025 1.00 46.46 O
ATOM 27 OP2 A B 220 50.206 96.336 20.940 1.00 44.96 O
ATOM 28 O5' A B 220 48.888 97.670 22.605 1.00 46.68 O
TER
ATOM 2 P A A 653 40.919 99.087 33.692 1.00 46.04 P
ATOM 3 OP1 A A 653 40.628 100.132 34.714 1.00 43.51 O
ATOM 4 OP2 A A 653 40.400 99.250 32.307 1.00 43.44 O
ATOM 5 O5' A A 653 42.497 98.879 33.610 1.00 42.99 O
ATOM 6 C5' A A 653 43.276 98.827 34.812 1.00 42.39 C
ATOM 7 C4' A A 653 44.743 98.975 34.507 1.00 41.98 C
ATOM 8 O4' A A 653 45.276 97.753 33.953 1.00 42.33 O
ATOM 9 C3' A A 653 45.124 100.039 33.501 1.00 42.02 C
ATOM 10 O3' A A 653 45.137 101.320 34.110 1.00 41.29 O
ATOM 11 C2' A A 653 46.516 99.588 33.084 1.00 42.94 C
ATOM 12 O2' A A 653 47.500 99.965 34.023 1.00 42.23 O
ATOM 13 C1' A A 653 46.360 98.062 33.098 1.00 43.30 C
ATOM 14 N9 A A 653 46.087 97.470 31.790 1.00 45.04 N
ATOM 15 C8 A A 653 44.875 97.069 31.283 1.00 45.96 C
ATOM 16 N7 A A 653 44.950 96.551 30.081 1.00 46.64 N
ATOM 17 C5 A A 653 46.300 96.617 29.776 1.00 46.07 C
ATOM 18 C6 A A 653 47.028 96.221 28.651 1.00 46.56 C
ATOM 19 N6 A A 653 46.480 95.645 27.584 1.00 47.43 N
ATOM 20 N1 A A 653 48.359 96.436 28.657 1.00 47.70 N
ATOM 21 C2 A A 653 48.908 97.008 29.734 1.00 47.39 C
ATOM 22 N3 A A 653 48.330 97.417 30.856 1.00 44.77 N
ATOM 23 C4 A A 653 47.010 97.191 30.814 1.00 45.07 C
ATOM 24 P A A 654 44.624 102.596 33.288 1.00 43.25 P
ATOM 25 OP1 A A 654 44.569 103.716 34.252 1.00 43.14 O
ATOM 26 OP2 A A 654 43.408 102.240 32.528 1.00 41.82 O
ATOM 27 O5' A A 654 45.809 102.875 32.258 1.00 42.69 O
TER
ATOM 1 O3' C B 218 53.657 91.408 23.443 1.00 45.88 O
ATOM 2 P G B 219 53.205 92.459 22.328 1.00 46.36 P
ATOM 3 OP1 G B 219 52.478 91.677 21.305 1.00 48.96 O
ATOM 4 OP2 G B 219 54.373 93.275 21.928 1.00 47.30 O
ATOM 5 O5' G B 219 52.162 93.381 23.093 1.00 44.00 O
ATOM 6 C5' G B 219 50.947 92.830 23.602 1.00 42.30 C
ATOM 7 C4' G B 219 50.223 93.853 24.428 1.00 43.11 C
ATOM 8 O4' G B 219 50.975 94.139 25.631 1.00 43.57 O
ATOM 9 C3' G B 219 50.080 95.201 23.763 1.00 43.25 C
ATOM 10 O3' G B 219 49.008 95.202 22.840 1.00 46.84 O
ATOM 11 C2' G B 219 49.876 96.130 24.951 1.00 42.12 C
ATOM 12 O2' G B 219 48.578 96.083 25.495 1.00 41.59 O
ATOM 13 C1' G B 219 50.826 95.507 25.967 1.00 42.49 C
ATOM 14 N9 G B 219 52.145 96.124 25.970 1.00 42.43 N
ATOM 15 C8 G B 219 53.314 95.595 25.479 1.00 41.36 C
ATOM 16 N7 G B 219 54.348 96.361 25.688 1.00 42.51 N
ATOM 17 C5 G B 219 53.828 97.470 26.345 1.00 41.86 C
ATOM 18 C6 G B 219 54.475 98.629 26.852 1.00 40.63 C
ATOM 19 O6 G B 219 55.676 98.919 26.817 1.00 38.45 O
ATOM 20 N1 G B 219 53.568 99.496 27.451 1.00 40.19 N
ATOM 21 C2 G B 219 52.217 99.282 27.548 1.00 41.01 C
ATOM 22 N2 G B 219 51.509 100.239 28.153 1.00 42.23 N
ATOM 23 N3 G B 219 51.604 98.209 27.085 1.00 41.33 N
ATOM 24 C4 G B 219 52.466 97.348 26.505 1.00 42.17 C
ATOM 25 P A B 220 48.933 96.355 21.724 1.00 49.00 P
ATOM 26 OP1 A B 220 47.618 96.262 21.025 1.00 46.46 O
ATOM 27 OP2 A B 220 50.206 96.336 20.940 1.00 44.96 O
ATOM 28 O5' A B 220 48.888 97.670 22.605 1.00 46.68 O
TER
Atoms:
OP1: (40.628,100.132,34.714)
OP2: (40.400,99.250,32.307)
C3': (45.124,100.039,33.501)
C1': (46.360,98.062,33.098)
C5': (43.276,98.827,34.812)
O4': (45.276,97.753,33.953)
C8: (44.875,97.069,31.283)
O2': (47.500,99.965,34.023)
C6: (47.028,96.221,28.651)
C5: (46.300,96.617,29.776)
C4: (47.010,97.191,30.814)
P: (40.919,99.087,33.692)
C4': (44.743,98.975,34.507)
C2': (46.516,99.588,33.084)
C2: (48.908,97.008,29.734)
N1: (48.359,96.436,28.657)
N3: (48.330,97.417,30.856)
N6: (46.480,95.645,27.584)
N7: (44.950,96.551,30.081)
N9: (46.087,97.470,31.790)
O5': (42.497,98.879,33.610)
O3': (45.137,101.320,34.110)
OP2: (40.400,99.250,32.307)
C3': (45.124,100.039,33.501)
C1': (46.360,98.062,33.098)
C5': (43.276,98.827,34.812)
O4': (45.276,97.753,33.953)
C8: (44.875,97.069,31.283)
O2': (47.500,99.965,34.023)
C6: (47.028,96.221,28.651)
C5: (46.300,96.617,29.776)
C4: (47.010,97.191,30.814)
P: (40.919,99.087,33.692)
C4': (44.743,98.975,34.507)
C2': (46.516,99.588,33.084)
C2: (48.908,97.008,29.734)
N1: (48.359,96.436,28.657)
N3: (48.330,97.417,30.856)
N6: (46.480,95.645,27.584)
N7: (44.950,96.551,30.081)
N9: (46.087,97.470,31.790)
O5': (42.497,98.879,33.610)
O3': (45.137,101.320,34.110)
OP1: (52.478,91.677,21.305)
OP2: (54.373,93.275,21.928)
C3': (50.080,95.201,23.763)
C1': (50.826,95.507,25.967)
C5': (50.947,92.830,23.602)
O6: (55.676,98.919,26.817)
O4': (50.975,94.139,25.631)
C8: (53.314,95.595,25.479)
C2: (52.217,99.282,27.548)
C6: (54.475,98.629,26.852)
C5: (53.828,97.470,26.345)
C4: (52.466,97.348,26.505)
P: (53.205,92.459,22.328)
C4': (50.223,93.853,24.428)
C2': (49.876,96.130,24.951)
O2': (48.578,96.083,25.495)
N1: (53.568,99.496,27.451)
N2: (51.509,100.239,28.153)
N3: (51.604,98.209,27.085)
N7: (54.348,96.361,25.688)
N9: (52.145,96.124,25.970)
O5': (52.162,93.381,23.093)
O3': (49.008,95.202,22.840)
OP2: (54.373,93.275,21.928)
C3': (50.080,95.201,23.763)
C1': (50.826,95.507,25.967)
C5': (50.947,92.830,23.602)
O6: (55.676,98.919,26.817)
O4': (50.975,94.139,25.631)
C8: (53.314,95.595,25.479)
C2: (52.217,99.282,27.548)
C6: (54.475,98.629,26.852)
C5: (53.828,97.470,26.345)
C4: (52.466,97.348,26.505)
P: (53.205,92.459,22.328)
C4': (50.223,93.853,24.428)
C2': (49.876,96.130,24.951)
O2': (48.578,96.083,25.495)
N1: (53.568,99.496,27.451)
N2: (51.509,100.239,28.153)
N3: (51.604,98.209,27.085)
N7: (54.348,96.361,25.688)
N9: (52.145,96.124,25.970)
O5': (52.162,93.381,23.093)
O3': (49.008,95.202,22.840)
Image (generated by PyMOL):