Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:A47:A20
Extra
PDB:
ATOM 1 O3' U A 46 11.330 4.575 -35.113 1.00 45.99 O
ATOM 2 P G A 47 11.073 6.153 -35.277 1.00 51.07 P
ATOM 3 OP1 G A 47 12.194 6.696 -36.082 1.00 48.89 O
ATOM 4 OP2 G A 47 10.842 6.700 -33.919 1.00 41.99 O
ATOM 5 O5' G A 47 9.723 6.209 -36.120 1.00 45.61 O
ATOM 6 C5' G A 47 9.438 5.223 -37.107 1.00 45.56 C
ATOM 7 C4' G A 47 8.063 5.402 -37.706 1.00 49.40 C
ATOM 8 O4' G A 47 7.086 5.554 -36.639 1.00 44.44 O
ATOM 9 C3' G A 47 7.894 6.617 -38.620 1.00 49.11 C
ATOM 10 O3' G A 47 7.020 6.278 -39.699 1.00 51.76 O
ATOM 11 C2' G A 47 7.209 7.634 -37.709 1.00 46.00 C
ATOM 12 O2' G A 47 6.454 8.615 -38.387 1.00 46.08 O
ATOM 13 C1' G A 47 6.327 6.728 -36.854 1.00 42.40 C
ATOM 14 N9 G A 47 5.969 7.291 -35.549 1.00 39.19 N
ATOM 15 C8 G A 47 6.714 8.136 -34.762 1.00 41.82 C
ATOM 16 N7 G A 47 6.116 8.467 -33.649 1.00 40.62 N
ATOM 17 C5 G A 47 4.900 7.801 -33.704 1.00 39.92 C
ATOM 18 C6 G A 47 3.824 7.774 -32.776 1.00 41.73 C
ATOM 19 O6 G A 47 3.738 8.355 -31.684 1.00 47.86 O
ATOM 20 N1 G A 47 2.777 6.970 -33.225 1.00 38.50 N
ATOM 21 C2 G A 47 2.768 6.280 -34.412 1.00 41.21 C
ATOM 22 N2 G A 47 1.671 5.558 -34.673 1.00 38.70 N
ATOM 23 N3 G A 47 3.762 6.298 -35.282 1.00 43.51 N
ATOM 24 C4 G A 47 4.790 7.073 -34.871 1.00 40.97 C
ATOM 25 P U A 48 7.620 5.701 -41.075 1.00 55.98 P
ATOM 26 OP1 U A 48 9.075 5.510 -40.872 1.00 59.99 O
ATOM 27 OP2 U A 48 7.166 6.604 -42.159 1.00 63.72 O
ATOM 28 O5' U A 48 6.900 4.284 -41.214 1.00 55.96 O
TER
ATOM 1 O3' U B 19 0.966 -1.270 -36.995 1.00 54.72 O
ATOM 2 P A B 20 -0.403 -0.523 -36.606 1.00 50.62 P
ATOM 3 OP1 A B 20 -1.463 -1.558 -36.543 1.00 54.25 O
ATOM 4 OP2 A B 20 -0.568 0.609 -37.551 1.00 50.82 O
ATOM 5 O5' A B 20 -0.101 0.031 -35.146 1.00 47.83 O
ATOM 6 C5' A B 20 -0.584 -0.645 -33.991 1.00 47.13 C
ATOM 7 C4' A B 20 -0.499 0.227 -32.764 1.00 50.50 C
ATOM 8 O4' A B 20 0.897 0.526 -32.495 1.00 53.44 O
ATOM 9 C3' A B 20 -1.206 1.572 -32.880 1.00 49.07 C
ATOM 10 O3' A B 20 -1.699 1.962 -31.598 1.00 48.71 O
ATOM 11 C2' A B 20 -0.081 2.509 -33.309 1.00 46.25 C
ATOM 12 O2' A B 20 -0.289 3.868 -32.982 1.00 49.20 O
ATOM 13 C1' A B 20 1.119 1.923 -32.564 1.00 44.80 C
ATOM 14 N9 A B 20 2.404 2.140 -33.237 1.00 42.96 N
ATOM 15 C8 A B 20 2.900 1.461 -34.325 1.00 41.38 C
ATOM 16 N7 A B 20 4.087 1.863 -34.711 1.00 45.73 N
ATOM 17 C5 A B 20 4.401 2.877 -33.814 1.00 40.94 C
ATOM 18 C6 A B 20 5.524 3.714 -33.677 1.00 38.13 C
ATOM 19 N6 A B 20 6.595 3.670 -34.474 1.00 38.94 N
ATOM 20 N1 A B 20 5.515 4.618 -32.674 1.00 40.38 N
ATOM 21 C2 A B 20 4.448 4.674 -31.867 1.00 40.43 C
ATOM 22 N3 A B 20 3.337 3.944 -31.894 1.00 42.57 N
ATOM 23 C4 A B 20 3.375 3.054 -32.900 1.00 41.94 C
ATOM 24 P U B 21 -3.273 2.209 -31.382 1.00 60.82 P
ATOM 25 OP1 U B 21 -3.855 2.502 -32.715 1.00 58.24 O
ATOM 26 OP2 U B 21 -3.413 3.220 -30.306 1.00 55.62 O
ATOM 27 O5' U B 21 -3.792 0.794 -30.868 1.00 54.11 O
TER
ATOM 2 P G A 47 11.073 6.153 -35.277 1.00 51.07 P
ATOM 3 OP1 G A 47 12.194 6.696 -36.082 1.00 48.89 O
ATOM 4 OP2 G A 47 10.842 6.700 -33.919 1.00 41.99 O
ATOM 5 O5' G A 47 9.723 6.209 -36.120 1.00 45.61 O
ATOM 6 C5' G A 47 9.438 5.223 -37.107 1.00 45.56 C
ATOM 7 C4' G A 47 8.063 5.402 -37.706 1.00 49.40 C
ATOM 8 O4' G A 47 7.086 5.554 -36.639 1.00 44.44 O
ATOM 9 C3' G A 47 7.894 6.617 -38.620 1.00 49.11 C
ATOM 10 O3' G A 47 7.020 6.278 -39.699 1.00 51.76 O
ATOM 11 C2' G A 47 7.209 7.634 -37.709 1.00 46.00 C
ATOM 12 O2' G A 47 6.454 8.615 -38.387 1.00 46.08 O
ATOM 13 C1' G A 47 6.327 6.728 -36.854 1.00 42.40 C
ATOM 14 N9 G A 47 5.969 7.291 -35.549 1.00 39.19 N
ATOM 15 C8 G A 47 6.714 8.136 -34.762 1.00 41.82 C
ATOM 16 N7 G A 47 6.116 8.467 -33.649 1.00 40.62 N
ATOM 17 C5 G A 47 4.900 7.801 -33.704 1.00 39.92 C
ATOM 18 C6 G A 47 3.824 7.774 -32.776 1.00 41.73 C
ATOM 19 O6 G A 47 3.738 8.355 -31.684 1.00 47.86 O
ATOM 20 N1 G A 47 2.777 6.970 -33.225 1.00 38.50 N
ATOM 21 C2 G A 47 2.768 6.280 -34.412 1.00 41.21 C
ATOM 22 N2 G A 47 1.671 5.558 -34.673 1.00 38.70 N
ATOM 23 N3 G A 47 3.762 6.298 -35.282 1.00 43.51 N
ATOM 24 C4 G A 47 4.790 7.073 -34.871 1.00 40.97 C
ATOM 25 P U A 48 7.620 5.701 -41.075 1.00 55.98 P
ATOM 26 OP1 U A 48 9.075 5.510 -40.872 1.00 59.99 O
ATOM 27 OP2 U A 48 7.166 6.604 -42.159 1.00 63.72 O
ATOM 28 O5' U A 48 6.900 4.284 -41.214 1.00 55.96 O
TER
ATOM 1 O3' U B 19 0.966 -1.270 -36.995 1.00 54.72 O
ATOM 2 P A B 20 -0.403 -0.523 -36.606 1.00 50.62 P
ATOM 3 OP1 A B 20 -1.463 -1.558 -36.543 1.00 54.25 O
ATOM 4 OP2 A B 20 -0.568 0.609 -37.551 1.00 50.82 O
ATOM 5 O5' A B 20 -0.101 0.031 -35.146 1.00 47.83 O
ATOM 6 C5' A B 20 -0.584 -0.645 -33.991 1.00 47.13 C
ATOM 7 C4' A B 20 -0.499 0.227 -32.764 1.00 50.50 C
ATOM 8 O4' A B 20 0.897 0.526 -32.495 1.00 53.44 O
ATOM 9 C3' A B 20 -1.206 1.572 -32.880 1.00 49.07 C
ATOM 10 O3' A B 20 -1.699 1.962 -31.598 1.00 48.71 O
ATOM 11 C2' A B 20 -0.081 2.509 -33.309 1.00 46.25 C
ATOM 12 O2' A B 20 -0.289 3.868 -32.982 1.00 49.20 O
ATOM 13 C1' A B 20 1.119 1.923 -32.564 1.00 44.80 C
ATOM 14 N9 A B 20 2.404 2.140 -33.237 1.00 42.96 N
ATOM 15 C8 A B 20 2.900 1.461 -34.325 1.00 41.38 C
ATOM 16 N7 A B 20 4.087 1.863 -34.711 1.00 45.73 N
ATOM 17 C5 A B 20 4.401 2.877 -33.814 1.00 40.94 C
ATOM 18 C6 A B 20 5.524 3.714 -33.677 1.00 38.13 C
ATOM 19 N6 A B 20 6.595 3.670 -34.474 1.00 38.94 N
ATOM 20 N1 A B 20 5.515 4.618 -32.674 1.00 40.38 N
ATOM 21 C2 A B 20 4.448 4.674 -31.867 1.00 40.43 C
ATOM 22 N3 A B 20 3.337 3.944 -31.894 1.00 42.57 N
ATOM 23 C4 A B 20 3.375 3.054 -32.900 1.00 41.94 C
ATOM 24 P U B 21 -3.273 2.209 -31.382 1.00 60.82 P
ATOM 25 OP1 U B 21 -3.855 2.502 -32.715 1.00 58.24 O
ATOM 26 OP2 U B 21 -3.413 3.220 -30.306 1.00 55.62 O
ATOM 27 O5' U B 21 -3.792 0.794 -30.868 1.00 54.11 O
TER
Atoms:
OP1: (12.194,6.696,-36.082)
OP2: (10.842,6.700,-33.919)
C3': (7.894,6.617,-38.620)
C1': (6.327,6.728,-36.854)
C5': (9.438,5.223,-37.107)
O6: (3.738,8.355,-31.684)
O4': (7.086,5.554,-36.639)
C8: (6.714,8.136,-34.762)
C2: (2.768,6.280,-34.412)
C6: (3.824,7.774,-32.776)
C5: (4.900,7.801,-33.704)
C4: (4.790,7.073,-34.871)
P: (11.073,6.153,-35.277)
C4': (8.063,5.402,-37.706)
C2': (7.209,7.634,-37.709)
O2': (6.454,8.615,-38.387)
N1: (2.777,6.970,-33.225)
N2: (1.671,5.558,-34.673)
N3: (3.762,6.298,-35.282)
N7: (6.116,8.467,-33.649)
N9: (5.969,7.291,-35.549)
O5': (9.723,6.209,-36.120)
O3': (7.020,6.278,-39.699)
OP2: (10.842,6.700,-33.919)
C3': (7.894,6.617,-38.620)
C1': (6.327,6.728,-36.854)
C5': (9.438,5.223,-37.107)
O6: (3.738,8.355,-31.684)
O4': (7.086,5.554,-36.639)
C8: (6.714,8.136,-34.762)
C2: (2.768,6.280,-34.412)
C6: (3.824,7.774,-32.776)
C5: (4.900,7.801,-33.704)
C4: (4.790,7.073,-34.871)
P: (11.073,6.153,-35.277)
C4': (8.063,5.402,-37.706)
C2': (7.209,7.634,-37.709)
O2': (6.454,8.615,-38.387)
N1: (2.777,6.970,-33.225)
N2: (1.671,5.558,-34.673)
N3: (3.762,6.298,-35.282)
N7: (6.116,8.467,-33.649)
N9: (5.969,7.291,-35.549)
O5': (9.723,6.209,-36.120)
O3': (7.020,6.278,-39.699)
OP1: (-1.463,-1.558,-36.543)
OP2: (-0.568,0.609,-37.551)
C3': (-1.206,1.572,-32.880)
C1': (1.119,1.923,-32.564)
C5': (-0.584,-0.645,-33.991)
O4': (0.897,0.526,-32.495)
C8: (2.900,1.461,-34.325)
O2': (-0.289,3.868,-32.982)
C6: (5.524,3.714,-33.677)
C5: (4.401,2.877,-33.814)
C4: (3.375,3.054,-32.900)
P: (-0.403,-0.523,-36.606)
C4': (-0.499,0.227,-32.764)
C2': (-0.081,2.509,-33.309)
C2: (4.448,4.674,-31.867)
N1: (5.515,4.618,-32.674)
N3: (3.337,3.944,-31.894)
N6: (6.595,3.670,-34.474)
N7: (4.087,1.863,-34.711)
N9: (2.404,2.140,-33.237)
O5': (-0.101,0.031,-35.146)
O3': (-1.699,1.962,-31.598)
OP2: (-0.568,0.609,-37.551)
C3': (-1.206,1.572,-32.880)
C1': (1.119,1.923,-32.564)
C5': (-0.584,-0.645,-33.991)
O4': (0.897,0.526,-32.495)
C8: (2.900,1.461,-34.325)
O2': (-0.289,3.868,-32.982)
C6: (5.524,3.714,-33.677)
C5: (4.401,2.877,-33.814)
C4: (3.375,3.054,-32.900)
P: (-0.403,-0.523,-36.606)
C4': (-0.499,0.227,-32.764)
C2': (-0.081,2.509,-33.309)
C2: (4.448,4.674,-31.867)
N1: (5.515,4.618,-32.674)
N3: (3.337,3.944,-31.894)
N6: (6.595,3.670,-34.474)
N7: (4.087,1.863,-34.711)
N9: (2.404,2.140,-33.237)
O5': (-0.101,0.031,-35.146)
O3': (-1.699,1.962,-31.598)
Image (generated by PyMOL):