Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3RKF:D47:D20
Extra
PDB:
ATOM 1 O3' U A 46 1.923 -11.642 -57.450 1.00 44.89 O
ATOM 2 P G A 47 0.443 -12.240 -57.266 1.00 43.83 P
ATOM 3 OP1 G A 47 0.548 -13.391 -56.337 1.00 48.63 O
ATOM 4 OP2 G A 47 -0.107 -12.469 -58.624 1.00 46.19 O
ATOM 5 O5' G A 47 -0.339 -11.045 -56.563 1.00 41.45 O
ATOM 6 C5' G A 47 0.211 -10.372 -55.436 1.00 44.52 C
ATOM 7 C4' G A 47 -0.775 -9.406 -54.821 1.00 48.75 C
ATOM 8 O4' G A 47 -1.408 -8.630 -55.875 1.00 44.28 O
ATOM 9 C3' G A 47 -1.912 -10.046 -54.020 1.00 48.63 C
ATOM 10 O3' G A 47 -2.235 -9.214 -52.908 1.00 55.88 O
ATOM 11 C2' G A 47 -3.071 -10.037 -55.011 1.00 47.05 C
ATOM 12 O2' G A 47 -4.350 -10.049 -54.415 1.00 51.04 O
ATOM 13 C1' G A 47 -2.813 -8.740 -55.770 1.00 42.00 C
ATOM 14 N9 G A 47 -3.378 -8.720 -57.119 1.00 40.46 N
ATOM 15 C8 G A 47 -3.645 -9.803 -57.922 1.00 41.72 C
ATOM 16 N7 G A 47 -4.157 -9.470 -59.075 1.00 43.41 N
ATOM 17 C5 G A 47 -4.236 -8.083 -59.027 1.00 42.12 C
ATOM 18 C6 G A 47 -4.710 -7.150 -59.987 1.00 40.16 C
ATOM 19 O6 G A 47 -5.169 -7.370 -61.115 1.00 41.45 O
ATOM 20 N1 G A 47 -4.610 -5.840 -59.526 1.00 39.09 N
ATOM 21 C2 G A 47 -4.119 -5.467 -58.301 1.00 43.27 C
ATOM 22 N2 G A 47 -4.103 -4.152 -58.039 1.00 39.51 N
ATOM 23 N3 G A 47 -3.676 -6.325 -57.399 1.00 46.58 N
ATOM 24 C4 G A 47 -3.764 -7.605 -57.823 1.00 45.17 C
ATOM 25 P U A 48 -1.529 -9.457 -51.485 1.00 69.09 P
ATOM 26 OP1 U A 48 -0.634 -10.629 -51.637 1.00 61.80 O
ATOM 27 OP2 U A 48 -2.606 -9.512 -50.469 1.00 62.39 O
ATOM 28 O5' U A 48 -0.665 -8.132 -51.288 1.00 59.74 O
TER
ATOM 1 O3' U B 19 1.535 -0.093 -55.720 1.00 55.71 O
ATOM 2 P A B 20 0.226 0.754 -56.104 1.00 47.94 P
ATOM 3 OP1 A B 20 0.647 2.167 -56.244 1.00 50.57 O
ATOM 4 OP2 A B 20 -0.819 0.418 -55.108 1.00 47.36 O
ATOM 5 O5' A B 20 -0.172 0.166 -57.527 1.00 49.66 O
ATOM 6 C5' A B 20 0.134 0.874 -58.723 1.00 48.45 C
ATOM 7 C4' A B 20 -0.608 0.306 -59.905 1.00 48.25 C
ATOM 8 O4' A B 20 -0.132 -1.043 -60.157 1.00 51.74 O
ATOM 9 C3' A B 20 -2.117 0.198 -59.725 1.00 48.99 C
ATOM 10 O3' A B 20 -2.762 0.383 -60.985 1.00 50.57 O
ATOM 11 C2' A B 20 -2.299 -1.243 -59.258 1.00 46.10 C
ATOM 12 O2' A B 20 -3.573 -1.791 -59.526 1.00 44.09 O
ATOM 13 C1' A B 20 -1.197 -1.967 -60.031 1.00 45.54 C
ATOM 14 N9 A B 20 -0.683 -3.157 -59.348 1.00 43.35 N
ATOM 15 C8 A B 20 0.160 -3.188 -58.266 1.00 43.27 C
ATOM 16 N7 A B 20 0.456 -4.398 -57.857 1.00 46.14 N
ATOM 17 C5 A B 20 -0.240 -5.221 -58.732 1.00 42.36 C
ATOM 18 C6 A B 20 -0.345 -6.620 -58.836 1.00 38.55 C
ATOM 19 N6 A B 20 0.276 -7.474 -58.018 1.00 38.53 N
ATOM 20 N1 A B 20 -1.121 -7.121 -59.822 1.00 42.28 N
ATOM 21 C2 A B 20 -1.745 -6.266 -60.643 1.00 43.37 C
ATOM 22 N3 A B 20 -1.727 -4.935 -60.648 1.00 42.45 N
ATOM 23 C4 A B 20 -0.946 -4.469 -59.657 1.00 42.93 C
ATOM 24 P U B 21 -3.692 1.670 -61.232 1.00 60.47 P
ATOM 25 OP1 U B 21 -4.316 2.013 -59.929 1.00 57.17 O
ATOM 26 OP2 U B 21 -4.572 1.360 -62.383 1.00 58.00 O
ATOM 27 O5' U B 21 -2.641 2.795 -61.640 1.00 55.81 O
TER
ATOM 2 P G A 47 0.443 -12.240 -57.266 1.00 43.83 P
ATOM 3 OP1 G A 47 0.548 -13.391 -56.337 1.00 48.63 O
ATOM 4 OP2 G A 47 -0.107 -12.469 -58.624 1.00 46.19 O
ATOM 5 O5' G A 47 -0.339 -11.045 -56.563 1.00 41.45 O
ATOM 6 C5' G A 47 0.211 -10.372 -55.436 1.00 44.52 C
ATOM 7 C4' G A 47 -0.775 -9.406 -54.821 1.00 48.75 C
ATOM 8 O4' G A 47 -1.408 -8.630 -55.875 1.00 44.28 O
ATOM 9 C3' G A 47 -1.912 -10.046 -54.020 1.00 48.63 C
ATOM 10 O3' G A 47 -2.235 -9.214 -52.908 1.00 55.88 O
ATOM 11 C2' G A 47 -3.071 -10.037 -55.011 1.00 47.05 C
ATOM 12 O2' G A 47 -4.350 -10.049 -54.415 1.00 51.04 O
ATOM 13 C1' G A 47 -2.813 -8.740 -55.770 1.00 42.00 C
ATOM 14 N9 G A 47 -3.378 -8.720 -57.119 1.00 40.46 N
ATOM 15 C8 G A 47 -3.645 -9.803 -57.922 1.00 41.72 C
ATOM 16 N7 G A 47 -4.157 -9.470 -59.075 1.00 43.41 N
ATOM 17 C5 G A 47 -4.236 -8.083 -59.027 1.00 42.12 C
ATOM 18 C6 G A 47 -4.710 -7.150 -59.987 1.00 40.16 C
ATOM 19 O6 G A 47 -5.169 -7.370 -61.115 1.00 41.45 O
ATOM 20 N1 G A 47 -4.610 -5.840 -59.526 1.00 39.09 N
ATOM 21 C2 G A 47 -4.119 -5.467 -58.301 1.00 43.27 C
ATOM 22 N2 G A 47 -4.103 -4.152 -58.039 1.00 39.51 N
ATOM 23 N3 G A 47 -3.676 -6.325 -57.399 1.00 46.58 N
ATOM 24 C4 G A 47 -3.764 -7.605 -57.823 1.00 45.17 C
ATOM 25 P U A 48 -1.529 -9.457 -51.485 1.00 69.09 P
ATOM 26 OP1 U A 48 -0.634 -10.629 -51.637 1.00 61.80 O
ATOM 27 OP2 U A 48 -2.606 -9.512 -50.469 1.00 62.39 O
ATOM 28 O5' U A 48 -0.665 -8.132 -51.288 1.00 59.74 O
TER
ATOM 1 O3' U B 19 1.535 -0.093 -55.720 1.00 55.71 O
ATOM 2 P A B 20 0.226 0.754 -56.104 1.00 47.94 P
ATOM 3 OP1 A B 20 0.647 2.167 -56.244 1.00 50.57 O
ATOM 4 OP2 A B 20 -0.819 0.418 -55.108 1.00 47.36 O
ATOM 5 O5' A B 20 -0.172 0.166 -57.527 1.00 49.66 O
ATOM 6 C5' A B 20 0.134 0.874 -58.723 1.00 48.45 C
ATOM 7 C4' A B 20 -0.608 0.306 -59.905 1.00 48.25 C
ATOM 8 O4' A B 20 -0.132 -1.043 -60.157 1.00 51.74 O
ATOM 9 C3' A B 20 -2.117 0.198 -59.725 1.00 48.99 C
ATOM 10 O3' A B 20 -2.762 0.383 -60.985 1.00 50.57 O
ATOM 11 C2' A B 20 -2.299 -1.243 -59.258 1.00 46.10 C
ATOM 12 O2' A B 20 -3.573 -1.791 -59.526 1.00 44.09 O
ATOM 13 C1' A B 20 -1.197 -1.967 -60.031 1.00 45.54 C
ATOM 14 N9 A B 20 -0.683 -3.157 -59.348 1.00 43.35 N
ATOM 15 C8 A B 20 0.160 -3.188 -58.266 1.00 43.27 C
ATOM 16 N7 A B 20 0.456 -4.398 -57.857 1.00 46.14 N
ATOM 17 C5 A B 20 -0.240 -5.221 -58.732 1.00 42.36 C
ATOM 18 C6 A B 20 -0.345 -6.620 -58.836 1.00 38.55 C
ATOM 19 N6 A B 20 0.276 -7.474 -58.018 1.00 38.53 N
ATOM 20 N1 A B 20 -1.121 -7.121 -59.822 1.00 42.28 N
ATOM 21 C2 A B 20 -1.745 -6.266 -60.643 1.00 43.37 C
ATOM 22 N3 A B 20 -1.727 -4.935 -60.648 1.00 42.45 N
ATOM 23 C4 A B 20 -0.946 -4.469 -59.657 1.00 42.93 C
ATOM 24 P U B 21 -3.692 1.670 -61.232 1.00 60.47 P
ATOM 25 OP1 U B 21 -4.316 2.013 -59.929 1.00 57.17 O
ATOM 26 OP2 U B 21 -4.572 1.360 -62.383 1.00 58.00 O
ATOM 27 O5' U B 21 -2.641 2.795 -61.640 1.00 55.81 O
TER
Atoms:
OP1: (0.548,-13.391,-56.337)
OP2: (-0.107,-12.469,-58.624)
C3': (-1.912,-10.046,-54.020)
C1': (-2.813,-8.740,-55.770)
C5': (0.211,-10.372,-55.436)
O6: (-5.169,-7.370,-61.115)
O4': (-1.408,-8.630,-55.875)
C8: (-3.645,-9.803,-57.922)
C2: (-4.119,-5.467,-58.301)
C6: (-4.710,-7.150,-59.987)
C5: (-4.236,-8.083,-59.027)
C4: (-3.764,-7.605,-57.823)
P: (0.443,-12.240,-57.266)
C4': (-0.775,-9.406,-54.821)
C2': (-3.071,-10.037,-55.011)
O2': (-4.350,-10.049,-54.415)
N1: (-4.610,-5.840,-59.526)
N2: (-4.103,-4.152,-58.039)
N3: (-3.676,-6.325,-57.399)
N7: (-4.157,-9.470,-59.075)
N9: (-3.378,-8.720,-57.119)
O5': (-0.339,-11.045,-56.563)
O3': (-2.235,-9.214,-52.908)
OP2: (-0.107,-12.469,-58.624)
C3': (-1.912,-10.046,-54.020)
C1': (-2.813,-8.740,-55.770)
C5': (0.211,-10.372,-55.436)
O6: (-5.169,-7.370,-61.115)
O4': (-1.408,-8.630,-55.875)
C8: (-3.645,-9.803,-57.922)
C2: (-4.119,-5.467,-58.301)
C6: (-4.710,-7.150,-59.987)
C5: (-4.236,-8.083,-59.027)
C4: (-3.764,-7.605,-57.823)
P: (0.443,-12.240,-57.266)
C4': (-0.775,-9.406,-54.821)
C2': (-3.071,-10.037,-55.011)
O2': (-4.350,-10.049,-54.415)
N1: (-4.610,-5.840,-59.526)
N2: (-4.103,-4.152,-58.039)
N3: (-3.676,-6.325,-57.399)
N7: (-4.157,-9.470,-59.075)
N9: (-3.378,-8.720,-57.119)
O5': (-0.339,-11.045,-56.563)
O3': (-2.235,-9.214,-52.908)
OP1: (0.647,2.167,-56.244)
OP2: (-0.819,0.418,-55.108)
C3': (-2.117,0.198,-59.725)
C1': (-1.197,-1.967,-60.031)
C5': (0.134,0.874,-58.723)
O4': (-0.132,-1.043,-60.157)
C8: (0.160,-3.188,-58.266)
O2': (-3.573,-1.791,-59.526)
C6: (-0.345,-6.620,-58.836)
C5: (-0.240,-5.221,-58.732)
C4: (-0.946,-4.469,-59.657)
P: (0.226,0.754,-56.104)
C4': (-0.608,0.306,-59.905)
C2': (-2.299,-1.243,-59.258)
C2: (-1.745,-6.266,-60.643)
N1: (-1.121,-7.121,-59.822)
N3: (-1.727,-4.935,-60.648)
N6: (0.276,-7.474,-58.018)
N7: (0.456,-4.398,-57.857)
N9: (-0.683,-3.157,-59.348)
O5': (-0.172,0.166,-57.527)
O3': (-2.762,0.383,-60.985)
OP2: (-0.819,0.418,-55.108)
C3': (-2.117,0.198,-59.725)
C1': (-1.197,-1.967,-60.031)
C5': (0.134,0.874,-58.723)
O4': (-0.132,-1.043,-60.157)
C8: (0.160,-3.188,-58.266)
O2': (-3.573,-1.791,-59.526)
C6: (-0.345,-6.620,-58.836)
C5: (-0.240,-5.221,-58.732)
C4: (-0.946,-4.469,-59.657)
P: (0.226,0.754,-56.104)
C4': (-0.608,0.306,-59.905)
C2': (-2.299,-1.243,-59.258)
C2: (-1.745,-6.266,-60.643)
N1: (-1.121,-7.121,-59.822)
N3: (-1.727,-4.935,-60.648)
N6: (0.276,-7.474,-58.018)
N7: (0.456,-4.398,-57.857)
N9: (-0.683,-3.157,-59.348)
O5': (-0.172,0.166,-57.527)
O3': (-2.762,0.383,-60.985)
Image (generated by PyMOL):