Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3P59:A6:B8
Extra
PDB:
ATOM 1 O3' G A 5 -10.972 -17.680 13.819 1.00 52.45 O
ATOM 2 P G A 6 -11.472 -19.068 13.174 1.00 54.74 P
ATOM 3 OP1 G A 6 -12.833 -19.350 13.706 1.00 52.99 O
ATOM 4 OP2 G A 6 -10.406 -20.069 13.402 1.00 58.18 O
ATOM 5 O5' G A 6 -11.556 -18.707 11.631 1.00 42.46 O
ATOM 6 C5' G A 6 -11.922 -19.686 10.687 1.00 35.56 C
ATOM 7 C4' G A 6 -11.959 -19.120 9.298 1.00 28.51 C
ATOM 8 O4' G A 6 -10.831 -18.213 9.099 1.00 28.79 O
ATOM 9 C3' G A 6 -11.795 -20.139 8.185 1.00 32.33 C
ATOM 10 O3' G A 6 -12.980 -20.858 7.882 1.00 36.26 O
ATOM 11 C2' G A 6 -11.251 -19.282 7.062 1.00 37.53 C
ATOM 12 O2' G A 6 -12.236 -18.376 6.598 1.00 47.73 O
ATOM 13 C1' G A 6 -10.234 -18.485 7.849 1.00 29.11 C
ATOM 14 N9 G A 6 -9.028 -19.287 8.100 1.00 33.94 N
ATOM 15 C8 G A 6 -8.641 -19.877 9.294 1.00 33.27 C
ATOM 16 N7 G A 6 -7.521 -20.524 9.194 1.00 34.03 N
ATOM 17 C5 G A 6 -7.148 -20.363 7.868 1.00 30.73 C
ATOM 18 C6 G A 6 -6.015 -20.849 7.179 1.00 34.12 C
ATOM 19 O6 G A 6 -5.075 -21.531 7.632 1.00 36.30 O
ATOM 20 N1 G A 6 -6.055 -20.453 5.833 1.00 39.17 N
ATOM 21 C2 G A 6 -7.039 -19.683 5.241 1.00 37.28 C
ATOM 22 N2 G A 6 -6.922 -19.397 3.943 1.00 34.48 N
ATOM 23 N3 G A 6 -8.091 -19.220 5.889 1.00 42.25 N
ATOM 24 C4 G A 6 -8.074 -19.607 7.183 1.00 34.41 C
ATOM 25 P A A 7 -12.970 -22.465 7.913 1.00 42.28 P
ATOM 26 OP1 A A 7 -14.335 -22.922 8.234 1.00 49.99 O
ATOM 27 OP2 A A 7 -11.852 -22.892 8.794 1.00 50.07 O
ATOM 28 O5' A A 7 -12.629 -22.822 6.412 1.00 54.14 O
TER
ATOM 1 O3' C B 7 -1.014 -20.602 -0.736 1.00 48.07 O
ATOM 2 P C B 8 -0.476 -19.130 -0.325 1.00 35.34 P
ATOM 3 OP1 C B 8 -0.204 -18.406 -1.578 1.00 35.15 O
ATOM 4 OP2 C B 8 0.624 -19.301 0.637 1.00 43.02 O
ATOM 5 O5' C B 8 -1.736 -18.490 0.388 1.00 43.20 O
ATOM 6 C5' C B 8 -2.975 -18.464 -0.287 1.00 48.06 C
ATOM 7 C4' C B 8 -4.002 -17.702 0.478 1.00 53.13 C
ATOM 8 O4' C B 8 -4.564 -18.537 1.518 1.00 58.38 O
ATOM 9 C3' C B 8 -3.498 -16.496 1.229 1.00 55.45 C
ATOM 10 O3' C B 8 -3.285 -15.384 0.396 1.00 53.93 O
ATOM 11 C2' C B 8 -4.600 -16.290 2.249 1.00 62.59 C
ATOM 12 O2' C B 8 -5.759 -15.746 1.632 1.00 69.79 O
ATOM 13 C1' C B 8 -4.897 -17.733 2.628 1.00 56.79 C
ATOM 14 N1 C B 8 -4.099 -18.167 3.790 1.00 44.53 N
ATOM 15 C2 C B 8 -4.625 -17.747 5.004 1.00 32.48 C
ATOM 16 O2 C B 8 -5.665 -17.073 4.950 1.00 29.83 O
ATOM 17 N3 C B 8 -3.997 -18.093 6.149 1.00 26.18 N
ATOM 18 C4 C B 8 -2.882 -18.810 6.080 1.00 24.01 C
ATOM 19 N4 C B 8 -2.305 -19.118 7.234 1.00 33.13 N
ATOM 20 C5 C B 8 -2.323 -19.244 4.844 1.00 21.11 C
ATOM 21 C6 C B 8 -2.952 -18.915 3.717 1.00 27.36 C
ATOM 22 P U B 9 -1.998 -14.469 0.610 1.00 75.85 P
ATOM 23 OP1 U B 9 -2.067 -13.379 -0.392 1.00 73.75 O
ATOM 24 OP2 U B 9 -0.817 -15.376 0.601 1.00 77.02 O
ATOM 25 O5' U B 9 -2.232 -13.883 2.074 1.00 58.44 O
TER
ATOM 2 P G A 6 -11.472 -19.068 13.174 1.00 54.74 P
ATOM 3 OP1 G A 6 -12.833 -19.350 13.706 1.00 52.99 O
ATOM 4 OP2 G A 6 -10.406 -20.069 13.402 1.00 58.18 O
ATOM 5 O5' G A 6 -11.556 -18.707 11.631 1.00 42.46 O
ATOM 6 C5' G A 6 -11.922 -19.686 10.687 1.00 35.56 C
ATOM 7 C4' G A 6 -11.959 -19.120 9.298 1.00 28.51 C
ATOM 8 O4' G A 6 -10.831 -18.213 9.099 1.00 28.79 O
ATOM 9 C3' G A 6 -11.795 -20.139 8.185 1.00 32.33 C
ATOM 10 O3' G A 6 -12.980 -20.858 7.882 1.00 36.26 O
ATOM 11 C2' G A 6 -11.251 -19.282 7.062 1.00 37.53 C
ATOM 12 O2' G A 6 -12.236 -18.376 6.598 1.00 47.73 O
ATOM 13 C1' G A 6 -10.234 -18.485 7.849 1.00 29.11 C
ATOM 14 N9 G A 6 -9.028 -19.287 8.100 1.00 33.94 N
ATOM 15 C8 G A 6 -8.641 -19.877 9.294 1.00 33.27 C
ATOM 16 N7 G A 6 -7.521 -20.524 9.194 1.00 34.03 N
ATOM 17 C5 G A 6 -7.148 -20.363 7.868 1.00 30.73 C
ATOM 18 C6 G A 6 -6.015 -20.849 7.179 1.00 34.12 C
ATOM 19 O6 G A 6 -5.075 -21.531 7.632 1.00 36.30 O
ATOM 20 N1 G A 6 -6.055 -20.453 5.833 1.00 39.17 N
ATOM 21 C2 G A 6 -7.039 -19.683 5.241 1.00 37.28 C
ATOM 22 N2 G A 6 -6.922 -19.397 3.943 1.00 34.48 N
ATOM 23 N3 G A 6 -8.091 -19.220 5.889 1.00 42.25 N
ATOM 24 C4 G A 6 -8.074 -19.607 7.183 1.00 34.41 C
ATOM 25 P A A 7 -12.970 -22.465 7.913 1.00 42.28 P
ATOM 26 OP1 A A 7 -14.335 -22.922 8.234 1.00 49.99 O
ATOM 27 OP2 A A 7 -11.852 -22.892 8.794 1.00 50.07 O
ATOM 28 O5' A A 7 -12.629 -22.822 6.412 1.00 54.14 O
TER
ATOM 1 O3' C B 7 -1.014 -20.602 -0.736 1.00 48.07 O
ATOM 2 P C B 8 -0.476 -19.130 -0.325 1.00 35.34 P
ATOM 3 OP1 C B 8 -0.204 -18.406 -1.578 1.00 35.15 O
ATOM 4 OP2 C B 8 0.624 -19.301 0.637 1.00 43.02 O
ATOM 5 O5' C B 8 -1.736 -18.490 0.388 1.00 43.20 O
ATOM 6 C5' C B 8 -2.975 -18.464 -0.287 1.00 48.06 C
ATOM 7 C4' C B 8 -4.002 -17.702 0.478 1.00 53.13 C
ATOM 8 O4' C B 8 -4.564 -18.537 1.518 1.00 58.38 O
ATOM 9 C3' C B 8 -3.498 -16.496 1.229 1.00 55.45 C
ATOM 10 O3' C B 8 -3.285 -15.384 0.396 1.00 53.93 O
ATOM 11 C2' C B 8 -4.600 -16.290 2.249 1.00 62.59 C
ATOM 12 O2' C B 8 -5.759 -15.746 1.632 1.00 69.79 O
ATOM 13 C1' C B 8 -4.897 -17.733 2.628 1.00 56.79 C
ATOM 14 N1 C B 8 -4.099 -18.167 3.790 1.00 44.53 N
ATOM 15 C2 C B 8 -4.625 -17.747 5.004 1.00 32.48 C
ATOM 16 O2 C B 8 -5.665 -17.073 4.950 1.00 29.83 O
ATOM 17 N3 C B 8 -3.997 -18.093 6.149 1.00 26.18 N
ATOM 18 C4 C B 8 -2.882 -18.810 6.080 1.00 24.01 C
ATOM 19 N4 C B 8 -2.305 -19.118 7.234 1.00 33.13 N
ATOM 20 C5 C B 8 -2.323 -19.244 4.844 1.00 21.11 C
ATOM 21 C6 C B 8 -2.952 -18.915 3.717 1.00 27.36 C
ATOM 22 P U B 9 -1.998 -14.469 0.610 1.00 75.85 P
ATOM 23 OP1 U B 9 -2.067 -13.379 -0.392 1.00 73.75 O
ATOM 24 OP2 U B 9 -0.817 -15.376 0.601 1.00 77.02 O
ATOM 25 O5' U B 9 -2.232 -13.883 2.074 1.00 58.44 O
TER
Atoms:
OP1: (-12.833,-19.350,13.706)
OP2: (-10.406,-20.069,13.402)
C3': (-11.795,-20.139,8.185)
C1': (-10.234,-18.485,7.849)
C5': (-11.922,-19.686,10.687)
O6: (-5.075,-21.531,7.632)
O4': (-10.831,-18.213,9.099)
C8: (-8.641,-19.877,9.294)
C2: (-7.039,-19.683,5.241)
C6: (-6.015,-20.849,7.179)
C5: (-7.148,-20.363,7.868)
C4: (-8.074,-19.607,7.183)
P: (-11.472,-19.068,13.174)
C4': (-11.959,-19.120,9.298)
C2': (-11.251,-19.282,7.062)
O2': (-12.236,-18.376,6.598)
N1: (-6.055,-20.453,5.833)
N2: (-6.922,-19.397,3.943)
N3: (-8.091,-19.220,5.889)
N7: (-7.521,-20.524,9.194)
N9: (-9.028,-19.287,8.100)
O5': (-11.556,-18.707,11.631)
O3': (-12.980,-20.858,7.882)
OP2: (-10.406,-20.069,13.402)
C3': (-11.795,-20.139,8.185)
C1': (-10.234,-18.485,7.849)
C5': (-11.922,-19.686,10.687)
O6: (-5.075,-21.531,7.632)
O4': (-10.831,-18.213,9.099)
C8: (-8.641,-19.877,9.294)
C2: (-7.039,-19.683,5.241)
C6: (-6.015,-20.849,7.179)
C5: (-7.148,-20.363,7.868)
C4: (-8.074,-19.607,7.183)
P: (-11.472,-19.068,13.174)
C4': (-11.959,-19.120,9.298)
C2': (-11.251,-19.282,7.062)
O2': (-12.236,-18.376,6.598)
N1: (-6.055,-20.453,5.833)
N2: (-6.922,-19.397,3.943)
N3: (-8.091,-19.220,5.889)
N7: (-7.521,-20.524,9.194)
N9: (-9.028,-19.287,8.100)
O5': (-11.556,-18.707,11.631)
O3': (-12.980,-20.858,7.882)
C2: (-4.625,-17.747,5.004)
OP1: (-0.204,-18.406,-1.578)
OP2: (0.624,-19.301,0.637)
C4: (-2.882,-18.810,6.080)
O5': (-1.736,-18.490,0.388)
C3': (-3.498,-16.496,1.229)
C1': (-4.897,-17.733,2.628)
O4': (-4.564,-18.537,1.518)
C5': (-2.975,-18.464,-0.287)
P: (-0.476,-19.130,-0.325)
O2: (-5.665,-17.073,4.950)
C4': (-4.002,-17.702,0.478)
C2': (-4.600,-16.290,2.249)
O2': (-5.759,-15.746,1.632)
N1: (-4.099,-18.167,3.790)
N3: (-3.997,-18.093,6.149)
N4: (-2.305,-19.118,7.234)
C6: (-2.952,-18.915,3.717)
C5: (-2.323,-19.244,4.844)
O3': (-3.285,-15.384,0.396)
OP1: (-0.204,-18.406,-1.578)
OP2: (0.624,-19.301,0.637)
C4: (-2.882,-18.810,6.080)
O5': (-1.736,-18.490,0.388)
C3': (-3.498,-16.496,1.229)
C1': (-4.897,-17.733,2.628)
O4': (-4.564,-18.537,1.518)
C5': (-2.975,-18.464,-0.287)
P: (-0.476,-19.130,-0.325)
O2: (-5.665,-17.073,4.950)
C4': (-4.002,-17.702,0.478)
C2': (-4.600,-16.290,2.249)
O2': (-5.759,-15.746,1.632)
N1: (-4.099,-18.167,3.790)
N3: (-3.997,-18.093,6.149)
N4: (-2.305,-19.118,7.234)
C6: (-2.952,-18.915,3.717)
C5: (-2.323,-19.244,4.844)
O3': (-3.285,-15.384,0.396)
Image (generated by PyMOL):