Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:924:91
Extra
PDB:
ATOM 1 O3' U A 23 61.978 1.954 100.275 1.00120.50 O
ATOM 2 P G A 24 62.083 3.359 99.502 1.00115.80 P
ATOM 3 OP1 G A 24 62.808 3.112 98.224 1.00115.58 O
ATOM 4 OP2 G A 24 62.607 4.373 100.458 1.00116.13 O
ATOM 5 O5' G A 24 60.568 3.730 99.173 1.00110.51 O
ATOM 6 C5' G A 24 59.986 3.450 97.882 1.00102.37 C
ATOM 7 C4' G A 24 58.926 4.479 97.562 1.00 96.53 C
ATOM 8 O4' G A 24 57.903 4.426 98.593 1.00 95.26 O
ATOM 9 C3' G A 24 59.405 5.923 97.587 1.00 92.94 C
ATOM 10 O3' G A 24 60.005 6.311 96.357 1.00 87.93 O
ATOM 11 C2' G A 24 58.128 6.687 97.906 1.00 92.35 C
ATOM 12 O2' G A 24 57.274 6.853 96.791 1.00 91.03 O
ATOM 13 C1' G A 24 57.471 5.740 98.912 1.00 93.03 C
ATOM 14 N9 G A 24 57.843 6.020 100.299 1.00 92.09 N
ATOM 15 C8 G A 24 58.547 5.207 101.160 1.00 91.31 C
ATOM 16 N7 G A 24 58.708 5.732 102.345 1.00 91.03 N
ATOM 17 C5 G A 24 58.073 6.965 102.262 1.00 91.29 C
ATOM 18 C6 G A 24 57.906 7.987 103.240 1.00 90.57 C
ATOM 19 O6 G A 24 58.276 7.999 104.419 1.00 89.05 O
ATOM 20 N1 G A 24 57.217 9.078 102.722 1.00 90.57 N
ATOM 21 C2 G A 24 56.741 9.175 101.439 1.00 90.95 C
ATOM 22 N2 G A 24 56.117 10.312 101.126 1.00 91.05 N
ATOM 23 N3 G A 24 56.871 8.228 100.527 1.00 91.39 N
ATOM 24 C4 G A 24 57.544 7.160 101.003 1.00 91.55 C
ATOM 25 P C A 25 61.206 7.379 96.358 1.00 83.94 P
ATOM 26 OP1 C A 25 61.571 7.602 94.938 1.00 83.61 O
ATOM 27 OP2 C A 25 62.250 6.955 97.326 1.00 83.98 O
ATOM 28 O5' C A 25 60.531 8.705 96.922 1.00 81.12 O
TER
ATOM 1 P U B 1 51.861 15.618 104.376 1.00142.43 P
ATOM 2 OP1 U B 1 50.777 16.569 104.746 1.00142.84 O
ATOM 3 OP2 U B 1 53.086 15.541 105.221 1.00142.23 O
ATOM 4 O5' U B 1 51.230 14.153 104.260 1.00138.48 O
ATOM 5 C5' U B 1 51.489 13.126 105.258 1.00130.94 C
ATOM 6 C4' U B 1 52.858 12.526 105.032 1.00125.13 C
ATOM 7 O4' U B 1 53.127 11.473 106.007 1.00124.15 O
ATOM 8 C3' U B 1 53.080 11.901 103.658 1.00121.40 C
ATOM 9 O3' U B 1 54.393 12.221 103.206 1.00113.91 O
ATOM 10 C2' U B 1 52.928 10.409 103.936 1.00122.49 C
ATOM 11 O2' U B 1 53.599 9.572 103.014 1.00122.21 O
ATOM 12 C1' U B 1 53.547 10.305 105.326 1.00124.13 C
ATOM 13 N1 U B 1 53.128 9.114 106.085 1.00125.49 N
ATOM 14 C2 U B 1 54.079 8.122 106.297 1.00125.81 C
ATOM 15 O2 U B 1 55.228 8.202 105.888 1.00126.03 O
ATOM 16 N3 U B 1 53.634 7.031 107.003 1.00125.83 N
ATOM 17 C4 U B 1 52.366 6.826 107.508 1.00125.94 C
ATOM 18 O4 U B 1 52.117 5.782 108.115 1.00125.27 O
ATOM 19 C5 U B 1 51.441 7.892 107.252 1.00126.07 C
ATOM 20 C6 U B 1 51.842 8.972 106.569 1.00125.95 C
ATOM 21 P A B 2 54.587 13.342 102.065 1.00107.36 P
ATOM 22 OP1 A B 2 53.278 13.977 101.818 1.00107.09 O
ATOM 23 OP2 A B 2 55.326 12.733 100.930 1.00108.36 O
ATOM 24 O5' A B 2 55.558 14.409 102.736 1.00100.34 O
TER
ATOM 2 P G A 24 62.083 3.359 99.502 1.00115.80 P
ATOM 3 OP1 G A 24 62.808 3.112 98.224 1.00115.58 O
ATOM 4 OP2 G A 24 62.607 4.373 100.458 1.00116.13 O
ATOM 5 O5' G A 24 60.568 3.730 99.173 1.00110.51 O
ATOM 6 C5' G A 24 59.986 3.450 97.882 1.00102.37 C
ATOM 7 C4' G A 24 58.926 4.479 97.562 1.00 96.53 C
ATOM 8 O4' G A 24 57.903 4.426 98.593 1.00 95.26 O
ATOM 9 C3' G A 24 59.405 5.923 97.587 1.00 92.94 C
ATOM 10 O3' G A 24 60.005 6.311 96.357 1.00 87.93 O
ATOM 11 C2' G A 24 58.128 6.687 97.906 1.00 92.35 C
ATOM 12 O2' G A 24 57.274 6.853 96.791 1.00 91.03 O
ATOM 13 C1' G A 24 57.471 5.740 98.912 1.00 93.03 C
ATOM 14 N9 G A 24 57.843 6.020 100.299 1.00 92.09 N
ATOM 15 C8 G A 24 58.547 5.207 101.160 1.00 91.31 C
ATOM 16 N7 G A 24 58.708 5.732 102.345 1.00 91.03 N
ATOM 17 C5 G A 24 58.073 6.965 102.262 1.00 91.29 C
ATOM 18 C6 G A 24 57.906 7.987 103.240 1.00 90.57 C
ATOM 19 O6 G A 24 58.276 7.999 104.419 1.00 89.05 O
ATOM 20 N1 G A 24 57.217 9.078 102.722 1.00 90.57 N
ATOM 21 C2 G A 24 56.741 9.175 101.439 1.00 90.95 C
ATOM 22 N2 G A 24 56.117 10.312 101.126 1.00 91.05 N
ATOM 23 N3 G A 24 56.871 8.228 100.527 1.00 91.39 N
ATOM 24 C4 G A 24 57.544 7.160 101.003 1.00 91.55 C
ATOM 25 P C A 25 61.206 7.379 96.358 1.00 83.94 P
ATOM 26 OP1 C A 25 61.571 7.602 94.938 1.00 83.61 O
ATOM 27 OP2 C A 25 62.250 6.955 97.326 1.00 83.98 O
ATOM 28 O5' C A 25 60.531 8.705 96.922 1.00 81.12 O
TER
ATOM 1 P U B 1 51.861 15.618 104.376 1.00142.43 P
ATOM 2 OP1 U B 1 50.777 16.569 104.746 1.00142.84 O
ATOM 3 OP2 U B 1 53.086 15.541 105.221 1.00142.23 O
ATOM 4 O5' U B 1 51.230 14.153 104.260 1.00138.48 O
ATOM 5 C5' U B 1 51.489 13.126 105.258 1.00130.94 C
ATOM 6 C4' U B 1 52.858 12.526 105.032 1.00125.13 C
ATOM 7 O4' U B 1 53.127 11.473 106.007 1.00124.15 O
ATOM 8 C3' U B 1 53.080 11.901 103.658 1.00121.40 C
ATOM 9 O3' U B 1 54.393 12.221 103.206 1.00113.91 O
ATOM 10 C2' U B 1 52.928 10.409 103.936 1.00122.49 C
ATOM 11 O2' U B 1 53.599 9.572 103.014 1.00122.21 O
ATOM 12 C1' U B 1 53.547 10.305 105.326 1.00124.13 C
ATOM 13 N1 U B 1 53.128 9.114 106.085 1.00125.49 N
ATOM 14 C2 U B 1 54.079 8.122 106.297 1.00125.81 C
ATOM 15 O2 U B 1 55.228 8.202 105.888 1.00126.03 O
ATOM 16 N3 U B 1 53.634 7.031 107.003 1.00125.83 N
ATOM 17 C4 U B 1 52.366 6.826 107.508 1.00125.94 C
ATOM 18 O4 U B 1 52.117 5.782 108.115 1.00125.27 O
ATOM 19 C5 U B 1 51.441 7.892 107.252 1.00126.07 C
ATOM 20 C6 U B 1 51.842 8.972 106.569 1.00125.95 C
ATOM 21 P A B 2 54.587 13.342 102.065 1.00107.36 P
ATOM 22 OP1 A B 2 53.278 13.977 101.818 1.00107.09 O
ATOM 23 OP2 A B 2 55.326 12.733 100.930 1.00108.36 O
ATOM 24 O5' A B 2 55.558 14.409 102.736 1.00100.34 O
TER
Atoms:
OP1: (62.808,3.112,98.224)
OP2: (62.607,4.373,100.458)
C3': (59.405,5.923,97.587)
C1': (57.471,5.740,98.912)
C5': (59.986,3.450,97.882)
O6: (58.276,7.999,104.419)
O4': (57.903,4.426,98.593)
C8: (58.547,5.207,101.160)
C2: (56.741,9.175,101.439)
C6: (57.906,7.987,103.240)
C5: (58.073,6.965,102.262)
C4: (57.544,7.160,101.003)
P: (62.083,3.359,99.502)
C4': (58.926,4.479,97.562)
C2': (58.128,6.687,97.906)
O2': (57.274,6.853,96.791)
N1: (57.217,9.078,102.722)
N2: (56.117,10.312,101.126)
N3: (56.871,8.228,100.527)
N7: (58.708,5.732,102.345)
N9: (57.843,6.020,100.299)
O5': (60.568,3.730,99.173)
O3': (60.005,6.311,96.357)
OP2: (62.607,4.373,100.458)
C3': (59.405,5.923,97.587)
C1': (57.471,5.740,98.912)
C5': (59.986,3.450,97.882)
O6: (58.276,7.999,104.419)
O4': (57.903,4.426,98.593)
C8: (58.547,5.207,101.160)
C2: (56.741,9.175,101.439)
C6: (57.906,7.987,103.240)
C5: (58.073,6.965,102.262)
C4: (57.544,7.160,101.003)
P: (62.083,3.359,99.502)
C4': (58.926,4.479,97.562)
C2': (58.128,6.687,97.906)
O2': (57.274,6.853,96.791)
N1: (57.217,9.078,102.722)
N2: (56.117,10.312,101.126)
N3: (56.871,8.228,100.527)
N7: (58.708,5.732,102.345)
N9: (57.843,6.020,100.299)
O5': (60.568,3.730,99.173)
O3': (60.005,6.311,96.357)
C4: (52.366,6.826,107.508)
N3: (53.634,7.031,107.003)
OP1: (50.777,16.569,104.746)
OP2: (53.086,15.541,105.221)
C2: (54.079,8.122,106.297)
C1': (53.547,10.305,105.326)
C3': (53.080,11.901,103.658)
O5': (51.230,14.153,104.260)
O4': (53.127,11.473,106.007)
C5': (51.489,13.126,105.258)
P: (51.861,15.618,104.376)
C4': (52.858,12.526,105.032)
C2': (52.928,10.409,103.936)
O2': (53.599,9.572,103.014)
N1: (53.128,9.114,106.085)
O4: (52.117,5.782,108.115)
O2: (55.228,8.202,105.888)
C6: (51.842,8.972,106.569)
C5: (51.441,7.892,107.252)
O3': (54.393,12.221,103.206)
N3: (53.634,7.031,107.003)
OP1: (50.777,16.569,104.746)
OP2: (53.086,15.541,105.221)
C2: (54.079,8.122,106.297)
C1': (53.547,10.305,105.326)
C3': (53.080,11.901,103.658)
O5': (51.230,14.153,104.260)
O4': (53.127,11.473,106.007)
C5': (51.489,13.126,105.258)
P: (51.861,15.618,104.376)
C4': (52.858,12.526,105.032)
C2': (52.928,10.409,103.936)
O2': (53.599,9.572,103.014)
N1: (53.128,9.114,106.085)
O4: (52.117,5.782,108.115)
O2: (55.228,8.202,105.888)
C6: (51.842,8.972,106.569)
C5: (51.441,7.892,107.252)
O3': (54.393,12.221,103.206)
Image (generated by PyMOL):