Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:924:91
Extra
PDB:
ATOM 1 O3' U A 23 61.581 1.767 100.027 1.00121.08 O
ATOM 2 P G A 24 61.892 3.178 99.325 1.00115.47 P
ATOM 3 OP1 G A 24 62.694 2.903 98.101 1.00115.53 O
ATOM 4 OP2 G A 24 62.425 4.104 100.358 1.00115.62 O
ATOM 5 O5' G A 24 60.455 3.708 98.890 1.00110.40 O
ATOM 6 C5' G A 24 59.899 3.397 97.597 1.00102.63 C
ATOM 7 C4' G A 24 58.852 4.421 97.235 1.00 96.52 C
ATOM 8 O4' G A 24 57.785 4.356 98.219 1.00 95.87 O
ATOM 9 C3' G A 24 59.339 5.860 97.301 1.00 92.49 C
ATOM 10 O3' G A 24 59.999 6.267 96.109 1.00 86.33 O
ATOM 11 C2' G A 24 58.058 6.624 97.599 1.00 92.61 C
ATOM 12 O2' G A 24 57.229 6.792 96.466 1.00 91.58 O
ATOM 13 C1' G A 24 57.385 5.667 98.584 1.00 93.53 C
ATOM 14 N9 G A 24 57.793 5.896 99.970 1.00 93.25 N
ATOM 15 C8 G A 24 58.517 5.052 100.785 1.00 92.60 C
ATOM 16 N7 G A 24 58.713 5.536 101.981 1.00 92.10 N
ATOM 17 C5 G A 24 58.081 6.772 101.957 1.00 92.86 C
ATOM 18 C6 G A 24 57.945 7.759 102.970 1.00 92.81 C
ATOM 19 O6 G A 24 58.347 7.729 104.135 1.00 92.63 O
ATOM 20 N1 G A 24 57.245 8.869 102.510 1.00 93.37 N
ATOM 21 C2 G A 24 56.731 9.011 101.245 1.00 93.82 C
ATOM 22 N2 G A 24 56.096 10.160 100.987 1.00 94.04 N
ATOM 23 N3 G A 24 56.835 8.096 100.299 1.00 93.75 N
ATOM 24 C4 G A 24 57.518 7.011 100.720 1.00 93.27 C
ATOM 25 P C A 25 61.278 7.236 96.201 1.00 80.65 P
ATOM 26 OP1 C A 25 61.776 7.423 94.820 1.00 80.72 O
ATOM 27 OP2 C A 25 62.203 6.742 97.252 1.00 81.18 O
ATOM 28 O5' C A 25 60.664 8.614 96.703 1.00 78.47 O
TER
ATOM 1 P U B 1 52.195 15.485 104.350 1.00143.90 P
ATOM 2 OP1 U B 1 51.224 16.513 104.814 1.00144.51 O
ATOM 3 OP2 U B 1 53.507 15.356 105.042 1.00143.83 O
ATOM 4 O5' U B 1 51.472 14.060 104.376 1.00140.23 O
ATOM 5 C5' U B 1 51.855 13.028 105.322 1.00132.50 C
ATOM 6 C4' U B 1 53.158 12.393 104.892 1.00126.87 C
ATOM 7 O4' U B 1 53.489 11.289 105.785 1.00125.70 O
ATOM 8 C3' U B 1 53.171 11.814 103.480 1.00123.60 C
ATOM 9 O3' U B 1 54.464 12.015 102.899 1.00117.21 O
ATOM 10 C2' U B 1 52.901 10.332 103.730 1.00124.46 C
ATOM 11 O2' U B 1 53.344 9.470 102.698 1.00124.03 O
ATOM 12 C1' U B 1 53.680 10.110 105.026 1.00125.55 C
ATOM 13 N1 U B 1 53.260 8.946 105.825 1.00126.18 N
ATOM 14 C2 U B 1 54.213 7.970 106.089 1.00126.25 C
ATOM 15 O2 U B 1 55.365 8.035 105.687 1.00126.42 O
ATOM 16 N3 U B 1 53.767 6.909 106.840 1.00125.97 N
ATOM 17 C4 U B 1 52.496 6.718 107.340 1.00126.04 C
ATOM 18 O4 U B 1 52.246 5.696 107.981 1.00125.45 O
ATOM 19 C5 U B 1 51.567 7.764 107.025 1.00126.18 C
ATOM 20 C6 U B 1 51.969 8.816 106.299 1.00126.39 C
ATOM 21 P A B 2 54.701 13.225 101.856 1.00111.49 P
ATOM 22 OP1 A B 2 53.397 13.846 101.539 1.00111.37 O
ATOM 23 OP2 A B 2 55.551 12.711 100.747 1.00112.00 O
ATOM 24 O5' A B 2 55.584 14.265 102.676 1.00103.71 O
TER
ATOM 2 P G A 24 61.892 3.178 99.325 1.00115.47 P
ATOM 3 OP1 G A 24 62.694 2.903 98.101 1.00115.53 O
ATOM 4 OP2 G A 24 62.425 4.104 100.358 1.00115.62 O
ATOM 5 O5' G A 24 60.455 3.708 98.890 1.00110.40 O
ATOM 6 C5' G A 24 59.899 3.397 97.597 1.00102.63 C
ATOM 7 C4' G A 24 58.852 4.421 97.235 1.00 96.52 C
ATOM 8 O4' G A 24 57.785 4.356 98.219 1.00 95.87 O
ATOM 9 C3' G A 24 59.339 5.860 97.301 1.00 92.49 C
ATOM 10 O3' G A 24 59.999 6.267 96.109 1.00 86.33 O
ATOM 11 C2' G A 24 58.058 6.624 97.599 1.00 92.61 C
ATOM 12 O2' G A 24 57.229 6.792 96.466 1.00 91.58 O
ATOM 13 C1' G A 24 57.385 5.667 98.584 1.00 93.53 C
ATOM 14 N9 G A 24 57.793 5.896 99.970 1.00 93.25 N
ATOM 15 C8 G A 24 58.517 5.052 100.785 1.00 92.60 C
ATOM 16 N7 G A 24 58.713 5.536 101.981 1.00 92.10 N
ATOM 17 C5 G A 24 58.081 6.772 101.957 1.00 92.86 C
ATOM 18 C6 G A 24 57.945 7.759 102.970 1.00 92.81 C
ATOM 19 O6 G A 24 58.347 7.729 104.135 1.00 92.63 O
ATOM 20 N1 G A 24 57.245 8.869 102.510 1.00 93.37 N
ATOM 21 C2 G A 24 56.731 9.011 101.245 1.00 93.82 C
ATOM 22 N2 G A 24 56.096 10.160 100.987 1.00 94.04 N
ATOM 23 N3 G A 24 56.835 8.096 100.299 1.00 93.75 N
ATOM 24 C4 G A 24 57.518 7.011 100.720 1.00 93.27 C
ATOM 25 P C A 25 61.278 7.236 96.201 1.00 80.65 P
ATOM 26 OP1 C A 25 61.776 7.423 94.820 1.00 80.72 O
ATOM 27 OP2 C A 25 62.203 6.742 97.252 1.00 81.18 O
ATOM 28 O5' C A 25 60.664 8.614 96.703 1.00 78.47 O
TER
ATOM 1 P U B 1 52.195 15.485 104.350 1.00143.90 P
ATOM 2 OP1 U B 1 51.224 16.513 104.814 1.00144.51 O
ATOM 3 OP2 U B 1 53.507 15.356 105.042 1.00143.83 O
ATOM 4 O5' U B 1 51.472 14.060 104.376 1.00140.23 O
ATOM 5 C5' U B 1 51.855 13.028 105.322 1.00132.50 C
ATOM 6 C4' U B 1 53.158 12.393 104.892 1.00126.87 C
ATOM 7 O4' U B 1 53.489 11.289 105.785 1.00125.70 O
ATOM 8 C3' U B 1 53.171 11.814 103.480 1.00123.60 C
ATOM 9 O3' U B 1 54.464 12.015 102.899 1.00117.21 O
ATOM 10 C2' U B 1 52.901 10.332 103.730 1.00124.46 C
ATOM 11 O2' U B 1 53.344 9.470 102.698 1.00124.03 O
ATOM 12 C1' U B 1 53.680 10.110 105.026 1.00125.55 C
ATOM 13 N1 U B 1 53.260 8.946 105.825 1.00126.18 N
ATOM 14 C2 U B 1 54.213 7.970 106.089 1.00126.25 C
ATOM 15 O2 U B 1 55.365 8.035 105.687 1.00126.42 O
ATOM 16 N3 U B 1 53.767 6.909 106.840 1.00125.97 N
ATOM 17 C4 U B 1 52.496 6.718 107.340 1.00126.04 C
ATOM 18 O4 U B 1 52.246 5.696 107.981 1.00125.45 O
ATOM 19 C5 U B 1 51.567 7.764 107.025 1.00126.18 C
ATOM 20 C6 U B 1 51.969 8.816 106.299 1.00126.39 C
ATOM 21 P A B 2 54.701 13.225 101.856 1.00111.49 P
ATOM 22 OP1 A B 2 53.397 13.846 101.539 1.00111.37 O
ATOM 23 OP2 A B 2 55.551 12.711 100.747 1.00112.00 O
ATOM 24 O5' A B 2 55.584 14.265 102.676 1.00103.71 O
TER
Atoms:
OP1: (62.694,2.903,98.101)
OP2: (62.425,4.104,100.358)
C3': (59.339,5.860,97.301)
C1': (57.385,5.667,98.584)
C5': (59.899,3.397,97.597)
O6: (58.347,7.729,104.135)
O4': (57.785,4.356,98.219)
C8: (58.517,5.052,100.785)
C2: (56.731,9.011,101.245)
C6: (57.945,7.759,102.970)
C5: (58.081,6.772,101.957)
C4: (57.518,7.011,100.720)
P: (61.892,3.178,99.325)
C4': (58.852,4.421,97.235)
C2': (58.058,6.624,97.599)
O2': (57.229,6.792,96.466)
N1: (57.245,8.869,102.510)
N2: (56.096,10.160,100.987)
N3: (56.835,8.096,100.299)
N7: (58.713,5.536,101.981)
N9: (57.793,5.896,99.970)
O5': (60.455,3.708,98.890)
O3': (59.999,6.267,96.109)
OP2: (62.425,4.104,100.358)
C3': (59.339,5.860,97.301)
C1': (57.385,5.667,98.584)
C5': (59.899,3.397,97.597)
O6: (58.347,7.729,104.135)
O4': (57.785,4.356,98.219)
C8: (58.517,5.052,100.785)
C2: (56.731,9.011,101.245)
C6: (57.945,7.759,102.970)
C5: (58.081,6.772,101.957)
C4: (57.518,7.011,100.720)
P: (61.892,3.178,99.325)
C4': (58.852,4.421,97.235)
C2': (58.058,6.624,97.599)
O2': (57.229,6.792,96.466)
N1: (57.245,8.869,102.510)
N2: (56.096,10.160,100.987)
N3: (56.835,8.096,100.299)
N7: (58.713,5.536,101.981)
N9: (57.793,5.896,99.970)
O5': (60.455,3.708,98.890)
O3': (59.999,6.267,96.109)
C4: (52.496,6.718,107.340)
N3: (53.767,6.909,106.840)
OP1: (51.224,16.513,104.814)
OP2: (53.507,15.356,105.042)
C2: (54.213,7.970,106.089)
C1': (53.680,10.110,105.026)
C3': (53.171,11.814,103.480)
O5': (51.472,14.060,104.376)
O4': (53.489,11.289,105.785)
C5': (51.855,13.028,105.322)
P: (52.195,15.485,104.350)
C4': (53.158,12.393,104.892)
C2': (52.901,10.332,103.730)
O2': (53.344,9.470,102.698)
N1: (53.260,8.946,105.825)
O4: (52.246,5.696,107.981)
O2: (55.365,8.035,105.687)
C6: (51.969,8.816,106.299)
C5: (51.567,7.764,107.025)
O3': (54.464,12.015,102.899)
N3: (53.767,6.909,106.840)
OP1: (51.224,16.513,104.814)
OP2: (53.507,15.356,105.042)
C2: (54.213,7.970,106.089)
C1': (53.680,10.110,105.026)
C3': (53.171,11.814,103.480)
O5': (51.472,14.060,104.376)
O4': (53.489,11.289,105.785)
C5': (51.855,13.028,105.322)
P: (52.195,15.485,104.350)
C4': (53.158,12.393,104.892)
C2': (52.901,10.332,103.730)
O2': (53.344,9.470,102.698)
N1: (53.260,8.946,105.825)
O4: (52.246,5.696,107.981)
O2: (55.365,8.035,105.687)
C6: (51.969,8.816,106.299)
C5: (51.567,7.764,107.025)
O3': (54.464,12.015,102.899)
Image (generated by PyMOL):