Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:924:91
Extra
PDB:
ATOM 1 O3' U A 23 61.835 2.202 100.553 1.00127.43 O
ATOM 2 P G A 24 61.627 3.489 99.614 1.00122.23 P
ATOM 3 OP1 G A 24 62.380 3.240 98.357 1.00122.61 O
ATOM 4 OP2 G A 24 61.918 4.704 100.420 1.00122.11 O
ATOM 5 O5' G A 24 60.068 3.471 99.288 1.00117.75 O
ATOM 6 C5' G A 24 59.584 3.423 97.931 1.00110.46 C
ATOM 7 C4' G A 24 58.652 4.584 97.675 1.00104.68 C
ATOM 8 O4' G A 24 57.605 4.568 98.684 1.00103.42 O
ATOM 9 C3' G A 24 59.284 5.961 97.820 1.00101.06 C
ATOM 10 O3' G A 24 59.961 6.371 96.637 1.00 95.80 O
ATOM 11 C2' G A 24 58.086 6.829 98.177 1.00100.57 C
ATOM 12 O2' G A 24 57.259 7.136 97.072 1.00 99.59 O
ATOM 13 C1' G A 24 57.332 5.891 99.118 1.00101.17 C
ATOM 14 N9 G A 24 57.779 6.021 100.504 1.00100.38 N
ATOM 15 C8 G A 24 58.476 5.102 101.257 1.00100.09 C
ATOM 16 N7 G A 24 58.730 5.517 102.468 1.00 99.71 N
ATOM 17 C5 G A 24 58.165 6.783 102.519 1.00 99.97 C
ATOM 18 C6 G A 24 58.111 7.726 103.577 1.00100.24 C
ATOM 19 O6 G A 24 58.552 7.623 104.725 1.00100.82 O
ATOM 20 N1 G A 24 57.452 8.887 103.192 1.00100.48 N
ATOM 21 C2 G A 24 56.908 9.112 101.952 1.00100.71 C
ATOM 22 N2 G A 24 56.318 10.294 101.771 1.00100.76 N
ATOM 23 N3 G A 24 56.942 8.241 100.963 1.00100.58 N
ATOM 24 C4 G A 24 57.580 7.108 101.313 1.00100.11 C
ATOM 25 P C A 25 61.278 7.285 96.751 1.00 91.15 P
ATOM 26 OP1 C A 25 61.816 7.441 95.379 1.00 91.91 O
ATOM 27 OP2 C A 25 62.156 6.755 97.823 1.00 91.79 O
ATOM 28 O5' C A 25 60.713 8.692 97.229 1.00 88.48 O
TER
ATOM 1 P U B 1 51.969 15.211 105.057 1.00151.62 P
ATOM 2 OP1 U B 1 50.812 16.093 105.370 1.00152.29 O
ATOM 3 OP2 U B 1 53.179 15.258 105.923 1.00151.92 O
ATOM 4 O5' U B 1 51.441 13.704 105.014 1.00147.29 O
ATOM 5 C5' U B 1 51.908 12.708 105.956 1.00139.31 C
ATOM 6 C4' U B 1 53.293 12.243 105.568 1.00133.72 C
ATOM 7 O4' U B 1 53.703 11.145 106.435 1.00132.99 O
ATOM 8 C3' U B 1 53.426 11.725 104.138 1.00130.46 C
ATOM 9 O3' U B 1 54.707 12.096 103.611 1.00123.42 O
ATOM 10 C2' U B 1 53.305 10.213 104.326 1.00131.50 C
ATOM 11 O2' U B 1 53.867 9.439 103.282 1.00131.08 O
ATOM 12 C1' U B 1 54.052 10.025 105.644 1.00132.71 C
ATOM 13 N1 U B 1 53.731 8.791 106.382 1.00133.66 N
ATOM 14 C2 U B 1 54.742 7.848 106.529 1.00134.22 C
ATOM 15 O2 U B 1 55.868 8.002 106.079 1.00134.83 O
ATOM 16 N3 U B 1 54.387 6.716 107.222 1.00133.99 N
ATOM 17 C4 U B 1 53.158 6.428 107.771 1.00133.92 C
ATOM 18 O4 U B 1 52.994 5.356 108.352 1.00133.18 O
ATOM 19 C5 U B 1 52.166 7.445 107.582 1.00134.31 C
ATOM 20 C6 U B 1 52.478 8.564 106.911 1.00134.15 C
ATOM 21 P A B 2 54.811 13.237 102.470 1.00116.97 P
ATOM 22 OP1 A B 2 53.461 13.763 102.211 1.00116.57 O
ATOM 23 OP2 A B 2 55.608 12.698 101.339 1.00117.66 O
ATOM 24 O5' A B 2 55.705 14.368 103.145 1.00109.87 O
TER
ATOM 2 P G A 24 61.627 3.489 99.614 1.00122.23 P
ATOM 3 OP1 G A 24 62.380 3.240 98.357 1.00122.61 O
ATOM 4 OP2 G A 24 61.918 4.704 100.420 1.00122.11 O
ATOM 5 O5' G A 24 60.068 3.471 99.288 1.00117.75 O
ATOM 6 C5' G A 24 59.584 3.423 97.931 1.00110.46 C
ATOM 7 C4' G A 24 58.652 4.584 97.675 1.00104.68 C
ATOM 8 O4' G A 24 57.605 4.568 98.684 1.00103.42 O
ATOM 9 C3' G A 24 59.284 5.961 97.820 1.00101.06 C
ATOM 10 O3' G A 24 59.961 6.371 96.637 1.00 95.80 O
ATOM 11 C2' G A 24 58.086 6.829 98.177 1.00100.57 C
ATOM 12 O2' G A 24 57.259 7.136 97.072 1.00 99.59 O
ATOM 13 C1' G A 24 57.332 5.891 99.118 1.00101.17 C
ATOM 14 N9 G A 24 57.779 6.021 100.504 1.00100.38 N
ATOM 15 C8 G A 24 58.476 5.102 101.257 1.00100.09 C
ATOM 16 N7 G A 24 58.730 5.517 102.468 1.00 99.71 N
ATOM 17 C5 G A 24 58.165 6.783 102.519 1.00 99.97 C
ATOM 18 C6 G A 24 58.111 7.726 103.577 1.00100.24 C
ATOM 19 O6 G A 24 58.552 7.623 104.725 1.00100.82 O
ATOM 20 N1 G A 24 57.452 8.887 103.192 1.00100.48 N
ATOM 21 C2 G A 24 56.908 9.112 101.952 1.00100.71 C
ATOM 22 N2 G A 24 56.318 10.294 101.771 1.00100.76 N
ATOM 23 N3 G A 24 56.942 8.241 100.963 1.00100.58 N
ATOM 24 C4 G A 24 57.580 7.108 101.313 1.00100.11 C
ATOM 25 P C A 25 61.278 7.285 96.751 1.00 91.15 P
ATOM 26 OP1 C A 25 61.816 7.441 95.379 1.00 91.91 O
ATOM 27 OP2 C A 25 62.156 6.755 97.823 1.00 91.79 O
ATOM 28 O5' C A 25 60.713 8.692 97.229 1.00 88.48 O
TER
ATOM 1 P U B 1 51.969 15.211 105.057 1.00151.62 P
ATOM 2 OP1 U B 1 50.812 16.093 105.370 1.00152.29 O
ATOM 3 OP2 U B 1 53.179 15.258 105.923 1.00151.92 O
ATOM 4 O5' U B 1 51.441 13.704 105.014 1.00147.29 O
ATOM 5 C5' U B 1 51.908 12.708 105.956 1.00139.31 C
ATOM 6 C4' U B 1 53.293 12.243 105.568 1.00133.72 C
ATOM 7 O4' U B 1 53.703 11.145 106.435 1.00132.99 O
ATOM 8 C3' U B 1 53.426 11.725 104.138 1.00130.46 C
ATOM 9 O3' U B 1 54.707 12.096 103.611 1.00123.42 O
ATOM 10 C2' U B 1 53.305 10.213 104.326 1.00131.50 C
ATOM 11 O2' U B 1 53.867 9.439 103.282 1.00131.08 O
ATOM 12 C1' U B 1 54.052 10.025 105.644 1.00132.71 C
ATOM 13 N1 U B 1 53.731 8.791 106.382 1.00133.66 N
ATOM 14 C2 U B 1 54.742 7.848 106.529 1.00134.22 C
ATOM 15 O2 U B 1 55.868 8.002 106.079 1.00134.83 O
ATOM 16 N3 U B 1 54.387 6.716 107.222 1.00133.99 N
ATOM 17 C4 U B 1 53.158 6.428 107.771 1.00133.92 C
ATOM 18 O4 U B 1 52.994 5.356 108.352 1.00133.18 O
ATOM 19 C5 U B 1 52.166 7.445 107.582 1.00134.31 C
ATOM 20 C6 U B 1 52.478 8.564 106.911 1.00134.15 C
ATOM 21 P A B 2 54.811 13.237 102.470 1.00116.97 P
ATOM 22 OP1 A B 2 53.461 13.763 102.211 1.00116.57 O
ATOM 23 OP2 A B 2 55.608 12.698 101.339 1.00117.66 O
ATOM 24 O5' A B 2 55.705 14.368 103.145 1.00109.87 O
TER
Atoms:
OP1: (62.380,3.240,98.357)
OP2: (61.918,4.704,100.420)
C3': (59.284,5.961,97.820)
C1': (57.332,5.891,99.118)
C5': (59.584,3.423,97.931)
O6: (58.552,7.623,104.725)
O4': (57.605,4.568,98.684)
C8: (58.476,5.102,101.257)
C2: (56.908,9.112,101.952)
C6: (58.111,7.726,103.577)
C5: (58.165,6.783,102.519)
C4: (57.580,7.108,101.313)
P: (61.627,3.489,99.614)
C4': (58.652,4.584,97.675)
C2': (58.086,6.829,98.177)
O2': (57.259,7.136,97.072)
N1: (57.452,8.887,103.192)
N2: (56.318,10.294,101.771)
N3: (56.942,8.241,100.963)
N7: (58.730,5.517,102.468)
N9: (57.779,6.021,100.504)
O5': (60.068,3.471,99.288)
O3': (59.961,6.371,96.637)
OP2: (61.918,4.704,100.420)
C3': (59.284,5.961,97.820)
C1': (57.332,5.891,99.118)
C5': (59.584,3.423,97.931)
O6: (58.552,7.623,104.725)
O4': (57.605,4.568,98.684)
C8: (58.476,5.102,101.257)
C2: (56.908,9.112,101.952)
C6: (58.111,7.726,103.577)
C5: (58.165,6.783,102.519)
C4: (57.580,7.108,101.313)
P: (61.627,3.489,99.614)
C4': (58.652,4.584,97.675)
C2': (58.086,6.829,98.177)
O2': (57.259,7.136,97.072)
N1: (57.452,8.887,103.192)
N2: (56.318,10.294,101.771)
N3: (56.942,8.241,100.963)
N7: (58.730,5.517,102.468)
N9: (57.779,6.021,100.504)
O5': (60.068,3.471,99.288)
O3': (59.961,6.371,96.637)
C4: (53.158,6.428,107.771)
N3: (54.387,6.716,107.222)
OP1: (50.812,16.093,105.370)
OP2: (53.179,15.258,105.923)
C2: (54.742,7.848,106.529)
C1': (54.052,10.025,105.644)
C3': (53.426,11.725,104.138)
O5': (51.441,13.704,105.014)
O4': (53.703,11.145,106.435)
C5': (51.908,12.708,105.956)
P: (51.969,15.211,105.057)
C4': (53.293,12.243,105.568)
C2': (53.305,10.213,104.326)
O2': (53.867,9.439,103.282)
N1: (53.731,8.791,106.382)
O4: (52.994,5.356,108.352)
O2: (55.868,8.002,106.079)
C6: (52.478,8.564,106.911)
C5: (52.166,7.445,107.582)
O3': (54.707,12.096,103.611)
N3: (54.387,6.716,107.222)
OP1: (50.812,16.093,105.370)
OP2: (53.179,15.258,105.923)
C2: (54.742,7.848,106.529)
C1': (54.052,10.025,105.644)
C3': (53.426,11.725,104.138)
O5': (51.441,13.704,105.014)
O4': (53.703,11.145,106.435)
C5': (51.908,12.708,105.956)
P: (51.969,15.211,105.057)
C4': (53.293,12.243,105.568)
C2': (53.305,10.213,104.326)
O2': (53.867,9.439,103.282)
N1: (53.731,8.791,106.382)
O4: (52.994,5.356,108.352)
O2: (55.868,8.002,106.079)
C6: (52.478,8.564,106.911)
C5: (52.166,7.445,107.582)
O3': (54.707,12.096,103.611)
Image (generated by PyMOL):