Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:924:91
Extra
PDB:
ATOM 1 O3' U A 23 61.894 1.999 99.891 1.00127.41 O
ATOM 2 P G A 24 61.902 3.379 99.067 1.00122.46 P
ATOM 3 OP1 G A 24 62.567 3.113 97.761 1.00122.35 O
ATOM 4 OP2 G A 24 62.430 4.450 99.951 1.00122.38 O
ATOM 5 O5' G A 24 60.357 3.674 98.811 1.00117.75 O
ATOM 6 C5' G A 24 59.748 3.457 97.519 1.00110.01 C
ATOM 7 C4' G A 24 58.747 4.553 97.230 1.00103.57 C
ATOM 8 O4' G A 24 57.721 4.535 98.258 1.00102.63 O
ATOM 9 C3' G A 24 59.320 5.961 97.285 1.00 99.78 C
ATOM 10 O3' G A 24 59.914 6.331 96.045 1.00 94.10 O
ATOM 11 C2' G A 24 58.104 6.794 97.667 1.00 99.83 C
ATOM 12 O2' G A 24 57.221 7.029 96.588 1.00 99.19 O
ATOM 13 C1' G A 24 57.418 5.859 98.663 1.00100.65 C
ATOM 14 N9 G A 24 57.864 6.024 100.047 1.00100.98 N
ATOM 15 C8 G A 24 58.565 5.118 100.814 1.00100.81 C
ATOM 16 N7 G A 24 58.790 5.537 102.030 1.00100.47 N
ATOM 17 C5 G A 24 58.208 6.796 102.072 1.00100.90 C
ATOM 18 C6 G A 24 58.115 7.735 103.136 1.00100.73 C
ATOM 19 O6 G A 24 58.516 7.629 104.297 1.00100.69 O
ATOM 20 N1 G A 24 57.462 8.895 102.738 1.00101.12 N
ATOM 21 C2 G A 24 56.949 9.122 101.485 1.00101.66 C
ATOM 22 N2 G A 24 56.369 10.311 101.294 1.00102.05 N
ATOM 23 N3 G A 24 57.006 8.250 100.492 1.00101.75 N
ATOM 24 C4 G A 24 57.646 7.118 100.851 1.00101.26 C
ATOM 25 P C A 25 61.213 7.280 96.028 1.00 89.01 P
ATOM 26 OP1 C A 25 61.565 7.467 94.599 1.00 89.23 O
ATOM 27 OP2 C A 25 62.236 6.766 96.974 1.00 88.90 O
ATOM 28 O5' C A 25 60.674 8.663 96.598 1.00 87.18 O
TER
ATOM 1 P U B 1 51.892 15.705 104.414 1.00149.89 P
ATOM 2 OP1 U B 1 50.826 16.684 104.756 1.00150.50 O
ATOM 3 OP2 U B 1 53.111 15.624 105.267 1.00149.76 O
ATOM 4 O5' U B 1 51.234 14.249 104.341 1.00145.77 O
ATOM 5 C5' U B 1 51.501 13.233 105.351 1.00137.13 C
ATOM 6 C4' U B 1 52.853 12.604 105.099 1.00130.77 C
ATOM 7 O4' U B 1 53.106 11.528 106.054 1.00129.61 O
ATOM 8 C3' U B 1 53.036 11.983 103.715 1.00126.77 C
ATOM 9 O3' U B 1 54.354 12.278 103.250 1.00119.31 O
ATOM 10 C2' U B 1 52.881 10.491 103.997 1.00127.59 C
ATOM 11 O2' U B 1 53.490 9.646 103.042 1.00127.85 O
ATOM 12 C1' U B 1 53.577 10.397 105.348 1.00128.72 C
ATOM 13 N1 U B 1 53.329 9.171 106.126 1.00129.10 N
ATOM 14 C2 U B 1 54.379 8.269 106.242 1.00129.14 C
ATOM 15 O2 U B 1 55.473 8.449 105.733 1.00129.17 O
ATOM 16 N3 U B 1 54.102 7.143 106.976 1.00128.93 N
ATOM 17 C4 U B 1 52.913 6.823 107.589 1.00129.08 C
ATOM 18 O4 U B 1 52.819 5.759 108.204 1.00128.46 O
ATOM 19 C5 U B 1 51.874 7.799 107.425 1.00129.53 C
ATOM 20 C6 U B 1 52.112 8.913 106.717 1.00129.44 C
ATOM 21 P A B 2 54.557 13.318 102.036 1.00112.94 P
ATOM 22 OP1 A B 2 53.273 13.996 101.813 1.00112.67 O
ATOM 23 OP2 A B 2 55.205 12.605 100.909 1.00114.06 O
ATOM 24 O5' A B 2 55.603 14.380 102.600 1.00105.97 O
TER
ATOM 2 P G A 24 61.902 3.379 99.067 1.00122.46 P
ATOM 3 OP1 G A 24 62.567 3.113 97.761 1.00122.35 O
ATOM 4 OP2 G A 24 62.430 4.450 99.951 1.00122.38 O
ATOM 5 O5' G A 24 60.357 3.674 98.811 1.00117.75 O
ATOM 6 C5' G A 24 59.748 3.457 97.519 1.00110.01 C
ATOM 7 C4' G A 24 58.747 4.553 97.230 1.00103.57 C
ATOM 8 O4' G A 24 57.721 4.535 98.258 1.00102.63 O
ATOM 9 C3' G A 24 59.320 5.961 97.285 1.00 99.78 C
ATOM 10 O3' G A 24 59.914 6.331 96.045 1.00 94.10 O
ATOM 11 C2' G A 24 58.104 6.794 97.667 1.00 99.83 C
ATOM 12 O2' G A 24 57.221 7.029 96.588 1.00 99.19 O
ATOM 13 C1' G A 24 57.418 5.859 98.663 1.00100.65 C
ATOM 14 N9 G A 24 57.864 6.024 100.047 1.00100.98 N
ATOM 15 C8 G A 24 58.565 5.118 100.814 1.00100.81 C
ATOM 16 N7 G A 24 58.790 5.537 102.030 1.00100.47 N
ATOM 17 C5 G A 24 58.208 6.796 102.072 1.00100.90 C
ATOM 18 C6 G A 24 58.115 7.735 103.136 1.00100.73 C
ATOM 19 O6 G A 24 58.516 7.629 104.297 1.00100.69 O
ATOM 20 N1 G A 24 57.462 8.895 102.738 1.00101.12 N
ATOM 21 C2 G A 24 56.949 9.122 101.485 1.00101.66 C
ATOM 22 N2 G A 24 56.369 10.311 101.294 1.00102.05 N
ATOM 23 N3 G A 24 57.006 8.250 100.492 1.00101.75 N
ATOM 24 C4 G A 24 57.646 7.118 100.851 1.00101.26 C
ATOM 25 P C A 25 61.213 7.280 96.028 1.00 89.01 P
ATOM 26 OP1 C A 25 61.565 7.467 94.599 1.00 89.23 O
ATOM 27 OP2 C A 25 62.236 6.766 96.974 1.00 88.90 O
ATOM 28 O5' C A 25 60.674 8.663 96.598 1.00 87.18 O
TER
ATOM 1 P U B 1 51.892 15.705 104.414 1.00149.89 P
ATOM 2 OP1 U B 1 50.826 16.684 104.756 1.00150.50 O
ATOM 3 OP2 U B 1 53.111 15.624 105.267 1.00149.76 O
ATOM 4 O5' U B 1 51.234 14.249 104.341 1.00145.77 O
ATOM 5 C5' U B 1 51.501 13.233 105.351 1.00137.13 C
ATOM 6 C4' U B 1 52.853 12.604 105.099 1.00130.77 C
ATOM 7 O4' U B 1 53.106 11.528 106.054 1.00129.61 O
ATOM 8 C3' U B 1 53.036 11.983 103.715 1.00126.77 C
ATOM 9 O3' U B 1 54.354 12.278 103.250 1.00119.31 O
ATOM 10 C2' U B 1 52.881 10.491 103.997 1.00127.59 C
ATOM 11 O2' U B 1 53.490 9.646 103.042 1.00127.85 O
ATOM 12 C1' U B 1 53.577 10.397 105.348 1.00128.72 C
ATOM 13 N1 U B 1 53.329 9.171 106.126 1.00129.10 N
ATOM 14 C2 U B 1 54.379 8.269 106.242 1.00129.14 C
ATOM 15 O2 U B 1 55.473 8.449 105.733 1.00129.17 O
ATOM 16 N3 U B 1 54.102 7.143 106.976 1.00128.93 N
ATOM 17 C4 U B 1 52.913 6.823 107.589 1.00129.08 C
ATOM 18 O4 U B 1 52.819 5.759 108.204 1.00128.46 O
ATOM 19 C5 U B 1 51.874 7.799 107.425 1.00129.53 C
ATOM 20 C6 U B 1 52.112 8.913 106.717 1.00129.44 C
ATOM 21 P A B 2 54.557 13.318 102.036 1.00112.94 P
ATOM 22 OP1 A B 2 53.273 13.996 101.813 1.00112.67 O
ATOM 23 OP2 A B 2 55.205 12.605 100.909 1.00114.06 O
ATOM 24 O5' A B 2 55.603 14.380 102.600 1.00105.97 O
TER
Atoms:
OP1: (62.567,3.113,97.761)
OP2: (62.430,4.450,99.951)
C3': (59.320,5.961,97.285)
C1': (57.418,5.859,98.663)
C5': (59.748,3.457,97.519)
O6: (58.516,7.629,104.297)
O4': (57.721,4.535,98.258)
C8: (58.565,5.118,100.814)
C2: (56.949,9.122,101.485)
C6: (58.115,7.735,103.136)
C5: (58.208,6.796,102.072)
C4: (57.646,7.118,100.851)
P: (61.902,3.379,99.067)
C4': (58.747,4.553,97.230)
C2': (58.104,6.794,97.667)
O2': (57.221,7.029,96.588)
N1: (57.462,8.895,102.738)
N2: (56.369,10.311,101.294)
N3: (57.006,8.250,100.492)
N7: (58.790,5.537,102.030)
N9: (57.864,6.024,100.047)
O5': (60.357,3.674,98.811)
O3': (59.914,6.331,96.045)
OP2: (62.430,4.450,99.951)
C3': (59.320,5.961,97.285)
C1': (57.418,5.859,98.663)
C5': (59.748,3.457,97.519)
O6: (58.516,7.629,104.297)
O4': (57.721,4.535,98.258)
C8: (58.565,5.118,100.814)
C2: (56.949,9.122,101.485)
C6: (58.115,7.735,103.136)
C5: (58.208,6.796,102.072)
C4: (57.646,7.118,100.851)
P: (61.902,3.379,99.067)
C4': (58.747,4.553,97.230)
C2': (58.104,6.794,97.667)
O2': (57.221,7.029,96.588)
N1: (57.462,8.895,102.738)
N2: (56.369,10.311,101.294)
N3: (57.006,8.250,100.492)
N7: (58.790,5.537,102.030)
N9: (57.864,6.024,100.047)
O5': (60.357,3.674,98.811)
O3': (59.914,6.331,96.045)
C4: (52.913,6.823,107.589)
N3: (54.102,7.143,106.976)
OP1: (50.826,16.684,104.756)
OP2: (53.111,15.624,105.267)
C2: (54.379,8.269,106.242)
C1': (53.577,10.397,105.348)
C3': (53.036,11.983,103.715)
O5': (51.234,14.249,104.341)
O4': (53.106,11.528,106.054)
C5': (51.501,13.233,105.351)
P: (51.892,15.705,104.414)
C4': (52.853,12.604,105.099)
C2': (52.881,10.491,103.997)
O2': (53.490,9.646,103.042)
N1: (53.329,9.171,106.126)
O4: (52.819,5.759,108.204)
O2: (55.473,8.449,105.733)
C6: (52.112,8.913,106.717)
C5: (51.874,7.799,107.425)
O3': (54.354,12.278,103.250)
N3: (54.102,7.143,106.976)
OP1: (50.826,16.684,104.756)
OP2: (53.111,15.624,105.267)
C2: (54.379,8.269,106.242)
C1': (53.577,10.397,105.348)
C3': (53.036,11.983,103.715)
O5': (51.234,14.249,104.341)
O4': (53.106,11.528,106.054)
C5': (51.501,13.233,105.351)
P: (51.892,15.705,104.414)
C4': (52.853,12.604,105.099)
C2': (52.881,10.491,103.997)
O2': (53.490,9.646,103.042)
N1: (53.329,9.171,106.126)
O4: (52.819,5.759,108.204)
O2: (55.473,8.449,105.733)
C6: (52.112,8.913,106.717)
C5: (51.874,7.799,107.425)
O3': (54.354,12.278,103.250)
Image (generated by PyMOL):