Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YHQ:0554:0580
Extra
PDB:
ATOM 1 O3' A A 553 -0.804 90.717 98.098 1.00 41.48 O
ATOM 2 P A A 554 -0.931 90.206 99.615 1.00 43.21 P
ATOM 3 OP1 A A 554 -1.169 88.735 99.557 1.00 41.71 O
ATOM 4 OP2 A A 554 -1.890 91.089 100.340 1.00 42.28 O
ATOM 5 O5' A A 554 0.503 90.475 100.253 1.00 41.88 O
ATOM 6 C5' A A 554 1.692 89.855 99.721 1.00 37.31 C
ATOM 7 C4' A A 554 2.908 90.650 100.126 1.00 35.37 C
ATOM 8 O4' A A 554 2.810 91.987 99.563 1.00 34.90 O
ATOM 9 C3' A A 554 3.051 90.898 101.617 1.00 34.29 C
ATOM 10 O3' A A 554 3.663 89.798 102.270 1.00 35.65 O
ATOM 11 C2' A A 554 3.932 92.134 101.643 1.00 35.28 C
ATOM 12 O2' A A 554 5.283 91.803 101.367 1.00 34.36 O
ATOM 13 C1' A A 554 3.358 92.930 100.468 1.00 33.74 C
ATOM 14 N9 A A 554 2.302 93.875 100.845 1.00 34.34 N
ATOM 15 C8 A A 554 0.950 93.642 100.924 1.00 36.23 C
ATOM 16 N7 A A 554 0.251 94.690 101.302 1.00 36.46 N
ATOM 17 C5 A A 554 1.205 95.680 101.481 1.00 35.48 C
ATOM 18 C6 A A 554 1.111 97.033 101.878 1.00 34.88 C
ATOM 19 N6 A A 554 -0.037 97.645 102.175 1.00 32.38 N
ATOM 20 N1 A A 554 2.256 97.745 101.957 1.00 33.06 N
ATOM 21 C2 A A 554 3.405 97.141 101.649 1.00 33.80 C
ATOM 22 N3 A A 554 3.624 95.885 101.259 1.00 36.24 N
ATOM 23 C4 A A 554 2.472 95.196 101.198 1.00 35.45 C
ATOM 24 P U A 555 3.079 89.282 103.675 1.00 36.32 P
ATOM 25 OP1 U A 555 3.993 88.228 104.169 1.00 32.55 O
ATOM 26 OP2 U A 555 1.643 88.971 103.481 1.00 37.19 O
ATOM 27 O5' U A 555 3.161 90.555 104.632 1.00 34.56 O
TER
ATOM 1 O3' A B 579 -6.380 102.880 106.138 1.00 52.17 O
ATOM 2 P G B 580 -6.268 103.311 104.595 1.00 52.31 P
ATOM 3 OP1 G B 580 -5.930 104.755 104.590 1.00 52.02 O
ATOM 4 OP2 G B 580 -7.473 102.834 103.871 1.00 52.69 O
ATOM 5 O5' G B 580 -5.028 102.476 104.045 1.00 50.64 O
ATOM 6 C5' G B 580 -3.680 102.767 104.466 1.00 47.04 C
ATOM 7 C4' G B 580 -2.720 101.793 103.827 1.00 46.17 C
ATOM 8 O4' G B 580 -2.986 100.455 104.323 1.00 45.20 O
ATOM 9 C3' G B 580 -2.839 101.667 102.316 1.00 45.14 C
ATOM 10 O3' G B 580 -2.073 102.662 101.658 1.00 46.95 O
ATOM 11 C2' G B 580 -2.266 100.280 102.061 1.00 44.46 C
ATOM 12 O2' G B 580 -0.857 100.263 102.045 1.00 46.88 O
ATOM 13 C1' G B 580 -2.773 99.511 103.285 1.00 44.01 C
ATOM 14 N9 G B 580 -4.038 98.839 103.014 1.00 42.34 N
ATOM 15 C8 G B 580 -5.304 99.323 103.252 1.00 44.27 C
ATOM 16 N7 G B 580 -6.244 98.512 102.855 1.00 43.63 N
ATOM 17 C5 G B 580 -5.558 97.425 102.335 1.00 41.40 C
ATOM 18 C6 G B 580 -6.044 96.247 101.754 1.00 40.89 C
ATOM 19 O6 G B 580 -7.215 95.915 101.567 1.00 45.68 O
ATOM 20 N1 G B 580 -5.011 95.405 101.362 1.00 41.15 N
ATOM 21 C2 G B 580 -3.674 95.674 101.512 1.00 42.23 C
ATOM 22 N2 G B 580 -2.825 94.728 101.081 1.00 41.21 N
ATOM 23 N3 G B 580 -3.205 96.785 102.049 1.00 41.13 N
ATOM 24 C4 G B 580 -4.196 97.609 102.437 1.00 40.91 C
ATOM 25 P A B 581 -2.781 103.997 101.118 1.00 50.37 P
ATOM 26 OP1 A B 581 -2.830 104.971 102.244 1.00 48.33 O
ATOM 27 OP2 A B 581 -4.029 103.632 100.410 1.00 50.24 O
ATOM 28 O5' A B 581 -1.755 104.548 100.034 1.00 51.01 O
TER
ATOM 2 P A A 554 -0.931 90.206 99.615 1.00 43.21 P
ATOM 3 OP1 A A 554 -1.169 88.735 99.557 1.00 41.71 O
ATOM 4 OP2 A A 554 -1.890 91.089 100.340 1.00 42.28 O
ATOM 5 O5' A A 554 0.503 90.475 100.253 1.00 41.88 O
ATOM 6 C5' A A 554 1.692 89.855 99.721 1.00 37.31 C
ATOM 7 C4' A A 554 2.908 90.650 100.126 1.00 35.37 C
ATOM 8 O4' A A 554 2.810 91.987 99.563 1.00 34.90 O
ATOM 9 C3' A A 554 3.051 90.898 101.617 1.00 34.29 C
ATOM 10 O3' A A 554 3.663 89.798 102.270 1.00 35.65 O
ATOM 11 C2' A A 554 3.932 92.134 101.643 1.00 35.28 C
ATOM 12 O2' A A 554 5.283 91.803 101.367 1.00 34.36 O
ATOM 13 C1' A A 554 3.358 92.930 100.468 1.00 33.74 C
ATOM 14 N9 A A 554 2.302 93.875 100.845 1.00 34.34 N
ATOM 15 C8 A A 554 0.950 93.642 100.924 1.00 36.23 C
ATOM 16 N7 A A 554 0.251 94.690 101.302 1.00 36.46 N
ATOM 17 C5 A A 554 1.205 95.680 101.481 1.00 35.48 C
ATOM 18 C6 A A 554 1.111 97.033 101.878 1.00 34.88 C
ATOM 19 N6 A A 554 -0.037 97.645 102.175 1.00 32.38 N
ATOM 20 N1 A A 554 2.256 97.745 101.957 1.00 33.06 N
ATOM 21 C2 A A 554 3.405 97.141 101.649 1.00 33.80 C
ATOM 22 N3 A A 554 3.624 95.885 101.259 1.00 36.24 N
ATOM 23 C4 A A 554 2.472 95.196 101.198 1.00 35.45 C
ATOM 24 P U A 555 3.079 89.282 103.675 1.00 36.32 P
ATOM 25 OP1 U A 555 3.993 88.228 104.169 1.00 32.55 O
ATOM 26 OP2 U A 555 1.643 88.971 103.481 1.00 37.19 O
ATOM 27 O5' U A 555 3.161 90.555 104.632 1.00 34.56 O
TER
ATOM 1 O3' A B 579 -6.380 102.880 106.138 1.00 52.17 O
ATOM 2 P G B 580 -6.268 103.311 104.595 1.00 52.31 P
ATOM 3 OP1 G B 580 -5.930 104.755 104.590 1.00 52.02 O
ATOM 4 OP2 G B 580 -7.473 102.834 103.871 1.00 52.69 O
ATOM 5 O5' G B 580 -5.028 102.476 104.045 1.00 50.64 O
ATOM 6 C5' G B 580 -3.680 102.767 104.466 1.00 47.04 C
ATOM 7 C4' G B 580 -2.720 101.793 103.827 1.00 46.17 C
ATOM 8 O4' G B 580 -2.986 100.455 104.323 1.00 45.20 O
ATOM 9 C3' G B 580 -2.839 101.667 102.316 1.00 45.14 C
ATOM 10 O3' G B 580 -2.073 102.662 101.658 1.00 46.95 O
ATOM 11 C2' G B 580 -2.266 100.280 102.061 1.00 44.46 C
ATOM 12 O2' G B 580 -0.857 100.263 102.045 1.00 46.88 O
ATOM 13 C1' G B 580 -2.773 99.511 103.285 1.00 44.01 C
ATOM 14 N9 G B 580 -4.038 98.839 103.014 1.00 42.34 N
ATOM 15 C8 G B 580 -5.304 99.323 103.252 1.00 44.27 C
ATOM 16 N7 G B 580 -6.244 98.512 102.855 1.00 43.63 N
ATOM 17 C5 G B 580 -5.558 97.425 102.335 1.00 41.40 C
ATOM 18 C6 G B 580 -6.044 96.247 101.754 1.00 40.89 C
ATOM 19 O6 G B 580 -7.215 95.915 101.567 1.00 45.68 O
ATOM 20 N1 G B 580 -5.011 95.405 101.362 1.00 41.15 N
ATOM 21 C2 G B 580 -3.674 95.674 101.512 1.00 42.23 C
ATOM 22 N2 G B 580 -2.825 94.728 101.081 1.00 41.21 N
ATOM 23 N3 G B 580 -3.205 96.785 102.049 1.00 41.13 N
ATOM 24 C4 G B 580 -4.196 97.609 102.437 1.00 40.91 C
ATOM 25 P A B 581 -2.781 103.997 101.118 1.00 50.37 P
ATOM 26 OP1 A B 581 -2.830 104.971 102.244 1.00 48.33 O
ATOM 27 OP2 A B 581 -4.029 103.632 100.410 1.00 50.24 O
ATOM 28 O5' A B 581 -1.755 104.548 100.034 1.00 51.01 O
TER
Atoms:
OP1: (-1.169,88.735,99.557)
OP2: (-1.890,91.089,100.340)
C3': (3.051,90.898,101.617)
C1': (3.358,92.930,100.468)
C5': (1.692,89.855,99.721)
O4': (2.810,91.987,99.563)
C8: (0.950,93.642,100.924)
O2': (5.283,91.803,101.367)
C6: (1.111,97.033,101.878)
C5: (1.205,95.680,101.481)
C4: (2.472,95.196,101.198)
P: (-0.931,90.206,99.615)
C4': (2.908,90.650,100.126)
C2': (3.932,92.134,101.643)
C2: (3.405,97.141,101.649)
N1: (2.256,97.745,101.957)
N3: (3.624,95.885,101.259)
N6: (-0.037,97.645,102.175)
N7: (0.251,94.690,101.302)
N9: (2.302,93.875,100.845)
O5': (0.503,90.475,100.253)
O3': (3.663,89.798,102.270)
OP2: (-1.890,91.089,100.340)
C3': (3.051,90.898,101.617)
C1': (3.358,92.930,100.468)
C5': (1.692,89.855,99.721)
O4': (2.810,91.987,99.563)
C8: (0.950,93.642,100.924)
O2': (5.283,91.803,101.367)
C6: (1.111,97.033,101.878)
C5: (1.205,95.680,101.481)
C4: (2.472,95.196,101.198)
P: (-0.931,90.206,99.615)
C4': (2.908,90.650,100.126)
C2': (3.932,92.134,101.643)
C2: (3.405,97.141,101.649)
N1: (2.256,97.745,101.957)
N3: (3.624,95.885,101.259)
N6: (-0.037,97.645,102.175)
N7: (0.251,94.690,101.302)
N9: (2.302,93.875,100.845)
O5': (0.503,90.475,100.253)
O3': (3.663,89.798,102.270)
OP1: (-5.930,104.755,104.590)
OP2: (-7.473,102.834,103.871)
C3': (-2.839,101.667,102.316)
C1': (-2.773,99.511,103.285)
C5': (-3.680,102.767,104.466)
O6: (-7.215,95.915,101.567)
O4': (-2.986,100.455,104.323)
C8: (-5.304,99.323,103.252)
C2: (-3.674,95.674,101.512)
C6: (-6.044,96.247,101.754)
C5: (-5.558,97.425,102.335)
C4: (-4.196,97.609,102.437)
P: (-6.268,103.311,104.595)
C4': (-2.720,101.793,103.827)
C2': (-2.266,100.280,102.061)
O2': (-0.857,100.263,102.045)
N1: (-5.011,95.405,101.362)
N2: (-2.825,94.728,101.081)
N3: (-3.205,96.785,102.049)
N7: (-6.244,98.512,102.855)
N9: (-4.038,98.839,103.014)
O5': (-5.028,102.476,104.045)
O3': (-2.073,102.662,101.658)
OP2: (-7.473,102.834,103.871)
C3': (-2.839,101.667,102.316)
C1': (-2.773,99.511,103.285)
C5': (-3.680,102.767,104.466)
O6: (-7.215,95.915,101.567)
O4': (-2.986,100.455,104.323)
C8: (-5.304,99.323,103.252)
C2: (-3.674,95.674,101.512)
C6: (-6.044,96.247,101.754)
C5: (-5.558,97.425,102.335)
C4: (-4.196,97.609,102.437)
P: (-6.268,103.311,104.595)
C4': (-2.720,101.793,103.827)
C2': (-2.266,100.280,102.061)
O2': (-0.857,100.263,102.045)
N1: (-5.011,95.405,101.362)
N2: (-2.825,94.728,101.081)
N3: (-3.205,96.785,102.049)
N7: (-6.244,98.512,102.855)
N9: (-4.038,98.839,103.014)
O5': (-5.028,102.476,104.045)
O3': (-2.073,102.662,101.658)
Image (generated by PyMOL):