Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12776:12783
Extra
PDB:
ATOM 1 O3' U A2775 -11.183 40.606 10.458 1.00 68.24 O
ATOM 2 P A A2776 -11.682 39.216 9.889 1.00 68.14 P
ATOM 3 OP1 A A2776 -12.228 39.471 8.541 1.00 68.89 O
ATOM 4 OP2 A A2776 -12.549 38.596 10.918 1.00 67.83 O
ATOM 5 O5' A A2776 -10.354 38.417 9.751 1.00 67.55 O
ATOM 6 C5' A A2776 -9.499 38.663 8.663 1.00 67.78 C
ATOM 7 C4' A A2776 -8.197 37.948 8.841 1.00 67.12 C
ATOM 8 O4' A A2776 -7.644 38.260 10.140 1.00 66.56 O
ATOM 9 C3' A A2776 -8.262 36.434 8.792 1.00 66.72 C
ATOM 10 O3' A A2776 -8.166 35.960 7.471 1.00 67.07 O
ATOM 11 C2' A A2776 -7.077 36.022 9.628 1.00 65.95 C
ATOM 12 O2' A A2776 -5.895 36.071 8.839 1.00 65.92 O
ATOM 13 C1' A A2776 -7.016 37.139 10.669 1.00 65.86 C
ATOM 14 N9 A A2776 -7.698 36.784 11.914 1.00 65.50 N
ATOM 15 C8 A A2776 -8.892 37.223 12.403 1.00 65.79 C
ATOM 16 N7 A A2776 -9.202 36.725 13.578 1.00 65.32 N
ATOM 17 C5 A A2776 -8.120 35.917 13.872 1.00 64.68 C
ATOM 18 C6 A A2776 -7.823 35.110 14.978 1.00 63.99 C
ATOM 19 N6 A A2776 -8.668 34.997 16.023 1.00 63.84 N
ATOM 20 N1 A A2776 -6.616 34.441 14.957 1.00 63.47 N
ATOM 21 C2 A A2776 -5.817 34.575 13.894 1.00 63.66 C
ATOM 22 N3 A A2776 -5.977 35.312 12.799 1.00 64.29 N
ATOM 23 C4 A A2776 -7.169 35.950 12.861 1.00 64.77 C
ATOM 24 P C A2777 -9.239 34.938 6.913 1.00 69.79 P
ATOM 25 OP1 C A2777 -8.695 34.372 5.646 1.00 69.98 O
ATOM 26 OP2 C A2777 -10.524 35.645 6.879 1.00 70.38 O
ATOM 27 O5' C A2777 -9.265 33.831 8.032 1.00 69.06 O
TER
ATOM 1 O3' G B2782 -13.806 31.812 23.103 1.00 78.18 O
ATOM 2 P G B2783 -12.619 32.756 23.591 1.00 68.89 P
ATOM 3 OP1 G B2783 -11.797 31.960 24.554 1.00 68.16 O
ATOM 4 OP2 G B2783 -13.241 34.037 24.050 1.00 69.29 O
ATOM 5 O5' G B2783 -11.793 33.023 22.244 1.00 69.12 O
ATOM 6 C5' G B2783 -10.878 32.069 21.721 1.00 68.75 C
ATOM 7 C4' G B2783 -10.053 32.670 20.612 1.00 69.01 C
ATOM 8 O4' G B2783 -10.849 32.765 19.401 1.00 69.65 O
ATOM 9 C3' G B2783 -9.612 34.090 20.833 1.00 69.20 C
ATOM 10 O3' G B2783 -8.508 34.206 21.680 1.00 68.66 O
ATOM 11 C2' G B2783 -9.374 34.578 19.412 1.00 69.70 C
ATOM 12 O2' G B2783 -8.231 33.975 18.844 1.00 69.39 O
ATOM 13 C1' G B2783 -10.579 33.986 18.738 1.00 70.10 C
ATOM 14 N9 G B2783 -11.736 34.872 18.893 1.00 70.64 N
ATOM 15 C8 G B2783 -12.591 34.929 19.956 1.00 70.57 C
ATOM 16 N7 G B2783 -13.494 35.857 19.845 1.00 71.14 N
ATOM 17 C5 G B2783 -13.184 36.459 18.638 1.00 71.61 C
ATOM 18 C6 G B2783 -13.828 37.526 17.971 1.00 72.33 C
ATOM 19 O6 G B2783 -14.819 38.152 18.366 1.00 72.70 O
ATOM 20 N1 G B2783 -13.189 37.820 16.761 1.00 72.62 N
ATOM 21 C2 G B2783 -12.097 37.164 16.275 1.00 72.26 C
ATOM 22 N2 G B2783 -11.620 37.570 15.111 1.00 72.63 N
ATOM 23 N3 G B2783 -11.506 36.176 16.879 1.00 71.59 N
ATOM 24 C4 G B2783 -12.093 35.874 18.047 1.00 71.30 C
ATOM 25 P A B2784 -8.029 35.659 22.141 1.00 62.15 P
ATOM 26 OP1 A B2784 -7.038 35.475 23.231 1.00 61.51 O
ATOM 27 OP2 A B2784 -9.268 36.466 22.397 1.00 62.66 O
ATOM 28 O5' A B2784 -7.297 36.194 20.847 1.00 62.49 O
TER
ATOM 2 P A A2776 -11.682 39.216 9.889 1.00 68.14 P
ATOM 3 OP1 A A2776 -12.228 39.471 8.541 1.00 68.89 O
ATOM 4 OP2 A A2776 -12.549 38.596 10.918 1.00 67.83 O
ATOM 5 O5' A A2776 -10.354 38.417 9.751 1.00 67.55 O
ATOM 6 C5' A A2776 -9.499 38.663 8.663 1.00 67.78 C
ATOM 7 C4' A A2776 -8.197 37.948 8.841 1.00 67.12 C
ATOM 8 O4' A A2776 -7.644 38.260 10.140 1.00 66.56 O
ATOM 9 C3' A A2776 -8.262 36.434 8.792 1.00 66.72 C
ATOM 10 O3' A A2776 -8.166 35.960 7.471 1.00 67.07 O
ATOM 11 C2' A A2776 -7.077 36.022 9.628 1.00 65.95 C
ATOM 12 O2' A A2776 -5.895 36.071 8.839 1.00 65.92 O
ATOM 13 C1' A A2776 -7.016 37.139 10.669 1.00 65.86 C
ATOM 14 N9 A A2776 -7.698 36.784 11.914 1.00 65.50 N
ATOM 15 C8 A A2776 -8.892 37.223 12.403 1.00 65.79 C
ATOM 16 N7 A A2776 -9.202 36.725 13.578 1.00 65.32 N
ATOM 17 C5 A A2776 -8.120 35.917 13.872 1.00 64.68 C
ATOM 18 C6 A A2776 -7.823 35.110 14.978 1.00 63.99 C
ATOM 19 N6 A A2776 -8.668 34.997 16.023 1.00 63.84 N
ATOM 20 N1 A A2776 -6.616 34.441 14.957 1.00 63.47 N
ATOM 21 C2 A A2776 -5.817 34.575 13.894 1.00 63.66 C
ATOM 22 N3 A A2776 -5.977 35.312 12.799 1.00 64.29 N
ATOM 23 C4 A A2776 -7.169 35.950 12.861 1.00 64.77 C
ATOM 24 P C A2777 -9.239 34.938 6.913 1.00 69.79 P
ATOM 25 OP1 C A2777 -8.695 34.372 5.646 1.00 69.98 O
ATOM 26 OP2 C A2777 -10.524 35.645 6.879 1.00 70.38 O
ATOM 27 O5' C A2777 -9.265 33.831 8.032 1.00 69.06 O
TER
ATOM 1 O3' G B2782 -13.806 31.812 23.103 1.00 78.18 O
ATOM 2 P G B2783 -12.619 32.756 23.591 1.00 68.89 P
ATOM 3 OP1 G B2783 -11.797 31.960 24.554 1.00 68.16 O
ATOM 4 OP2 G B2783 -13.241 34.037 24.050 1.00 69.29 O
ATOM 5 O5' G B2783 -11.793 33.023 22.244 1.00 69.12 O
ATOM 6 C5' G B2783 -10.878 32.069 21.721 1.00 68.75 C
ATOM 7 C4' G B2783 -10.053 32.670 20.612 1.00 69.01 C
ATOM 8 O4' G B2783 -10.849 32.765 19.401 1.00 69.65 O
ATOM 9 C3' G B2783 -9.612 34.090 20.833 1.00 69.20 C
ATOM 10 O3' G B2783 -8.508 34.206 21.680 1.00 68.66 O
ATOM 11 C2' G B2783 -9.374 34.578 19.412 1.00 69.70 C
ATOM 12 O2' G B2783 -8.231 33.975 18.844 1.00 69.39 O
ATOM 13 C1' G B2783 -10.579 33.986 18.738 1.00 70.10 C
ATOM 14 N9 G B2783 -11.736 34.872 18.893 1.00 70.64 N
ATOM 15 C8 G B2783 -12.591 34.929 19.956 1.00 70.57 C
ATOM 16 N7 G B2783 -13.494 35.857 19.845 1.00 71.14 N
ATOM 17 C5 G B2783 -13.184 36.459 18.638 1.00 71.61 C
ATOM 18 C6 G B2783 -13.828 37.526 17.971 1.00 72.33 C
ATOM 19 O6 G B2783 -14.819 38.152 18.366 1.00 72.70 O
ATOM 20 N1 G B2783 -13.189 37.820 16.761 1.00 72.62 N
ATOM 21 C2 G B2783 -12.097 37.164 16.275 1.00 72.26 C
ATOM 22 N2 G B2783 -11.620 37.570 15.111 1.00 72.63 N
ATOM 23 N3 G B2783 -11.506 36.176 16.879 1.00 71.59 N
ATOM 24 C4 G B2783 -12.093 35.874 18.047 1.00 71.30 C
ATOM 25 P A B2784 -8.029 35.659 22.141 1.00 62.15 P
ATOM 26 OP1 A B2784 -7.038 35.475 23.231 1.00 61.51 O
ATOM 27 OP2 A B2784 -9.268 36.466 22.397 1.00 62.66 O
ATOM 28 O5' A B2784 -7.297 36.194 20.847 1.00 62.49 O
TER
Atoms:
OP1: (-12.228,39.471,8.541)
OP2: (-12.549,38.596,10.918)
C3': (-8.262,36.434,8.792)
C1': (-7.016,37.139,10.669)
C5': (-9.499,38.663,8.663)
O4': (-7.644,38.260,10.140)
C8: (-8.892,37.223,12.403)
O2': (-5.895,36.071,8.839)
C6: (-7.823,35.110,14.978)
C5: (-8.120,35.917,13.872)
C4: (-7.169,35.950,12.861)
P: (-11.682,39.216,9.889)
C4': (-8.197,37.948,8.841)
C2': (-7.077,36.022,9.628)
C2: (-5.817,34.575,13.894)
N1: (-6.616,34.441,14.957)
N3: (-5.977,35.312,12.799)
N6: (-8.668,34.997,16.023)
N7: (-9.202,36.725,13.578)
N9: (-7.698,36.784,11.914)
O5': (-10.354,38.417,9.751)
O3': (-8.166,35.960,7.471)
OP2: (-12.549,38.596,10.918)
C3': (-8.262,36.434,8.792)
C1': (-7.016,37.139,10.669)
C5': (-9.499,38.663,8.663)
O4': (-7.644,38.260,10.140)
C8: (-8.892,37.223,12.403)
O2': (-5.895,36.071,8.839)
C6: (-7.823,35.110,14.978)
C5: (-8.120,35.917,13.872)
C4: (-7.169,35.950,12.861)
P: (-11.682,39.216,9.889)
C4': (-8.197,37.948,8.841)
C2': (-7.077,36.022,9.628)
C2: (-5.817,34.575,13.894)
N1: (-6.616,34.441,14.957)
N3: (-5.977,35.312,12.799)
N6: (-8.668,34.997,16.023)
N7: (-9.202,36.725,13.578)
N9: (-7.698,36.784,11.914)
O5': (-10.354,38.417,9.751)
O3': (-8.166,35.960,7.471)
OP1: (-11.797,31.960,24.554)
OP2: (-13.241,34.037,24.050)
C3': (-9.612,34.090,20.833)
C1': (-10.579,33.986,18.738)
C5': (-10.878,32.069,21.721)
O6: (-14.819,38.152,18.366)
O4': (-10.849,32.765,19.401)
C8: (-12.591,34.929,19.956)
C2: (-12.097,37.164,16.275)
C6: (-13.828,37.526,17.971)
C5: (-13.184,36.459,18.638)
C4: (-12.093,35.874,18.047)
P: (-12.619,32.756,23.591)
C4': (-10.053,32.670,20.612)
C2': (-9.374,34.578,19.412)
O2': (-8.231,33.975,18.844)
N1: (-13.189,37.820,16.761)
N2: (-11.620,37.570,15.111)
N3: (-11.506,36.176,16.879)
N7: (-13.494,35.857,19.845)
N9: (-11.736,34.872,18.893)
O5': (-11.793,33.023,22.244)
O3': (-8.508,34.206,21.680)
OP2: (-13.241,34.037,24.050)
C3': (-9.612,34.090,20.833)
C1': (-10.579,33.986,18.738)
C5': (-10.878,32.069,21.721)
O6: (-14.819,38.152,18.366)
O4': (-10.849,32.765,19.401)
C8: (-12.591,34.929,19.956)
C2: (-12.097,37.164,16.275)
C6: (-13.828,37.526,17.971)
C5: (-13.184,36.459,18.638)
C4: (-12.093,35.874,18.047)
P: (-12.619,32.756,23.591)
C4': (-10.053,32.670,20.612)
C2': (-9.374,34.578,19.412)
O2': (-8.231,33.975,18.844)
N1: (-13.189,37.820,16.761)
N2: (-11.620,37.570,15.111)
N3: (-11.506,36.176,16.879)
N7: (-13.494,35.857,19.845)
N9: (-11.736,34.872,18.893)
O5': (-11.793,33.023,22.244)
O3': (-8.508,34.206,21.680)
Image (generated by PyMOL):