Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDK:S4:S3
Extra
PDB:
ATOM 1 O3' U A 3 7.108 103.267 -4.263 0.50117.62 O
ATOM 2 P G A 4 5.980 104.369 -4.672 0.50116.25 P
ATOM 3 OP1 G A 4 6.602 105.274 -5.721 0.50114.53 O
ATOM 4 OP2 G A 4 5.368 104.988 -3.444 0.50115.58 O
ATOM 5 O5' G A 4 4.815 103.521 -5.368 0.50114.97 O
ATOM 6 C5' G A 4 5.039 102.874 -6.643 0.50113.90 C
ATOM 7 C4' G A 4 3.859 102.007 -7.013 0.50112.92 C
ATOM 8 O4' G A 4 3.849 100.759 -6.256 0.50114.03 O
ATOM 9 C3' G A 4 2.488 102.622 -6.770 0.50111.42 C
ATOM 10 O3' G A 4 2.128 103.542 -7.812 0.50106.25 O
ATOM 11 C2' G A 4 1.582 101.383 -6.728 0.50113.07 C
ATOM 12 O2' G A 4 1.176 100.932 -8.019 0.50112.47 O
ATOM 13 C1' G A 4 2.496 100.331 -6.076 0.50114.68 C
ATOM 14 N9 G A 4 2.219 100.184 -4.642 0.50116.18 N
ATOM 15 C8 G A 4 2.811 100.880 -3.611 0.50116.73 C
ATOM 16 N7 G A 4 2.293 100.601 -2.439 0.50117.43 N
ATOM 17 C5 G A 4 1.304 99.654 -2.706 0.50117.48 C
ATOM 18 C6 G A 4 0.375 99.003 -1.822 0.50117.72 C
ATOM 19 O6 G A 4 0.229 99.167 -0.599 0.50118.08 O
ATOM 20 N1 G A 4 -0.439 98.098 -2.506 0.50116.93 N
ATOM 21 C2 G A 4 -0.382 97.857 -3.865 0.50116.58 C
ATOM 22 N2 G A 4 -1.238 96.921 -4.324 0.50116.78 N
ATOM 23 N3 G A 4 0.457 98.479 -4.708 0.50116.42 N
ATOM 24 C4 G A 4 1.266 99.358 -4.062 0.50116.77 C
ATOM 25 P A A 5 2.127 105.146 -7.523 0.50100.98 P
ATOM 26 OP1 A A 5 3.407 105.712 -8.095 0.50101.14 O
ATOM 27 OP2 A A 5 1.823 105.379 -6.056 0.50 99.50 O
ATOM 28 O5' A A 5 0.917 105.684 -8.431 0.50 99.25 O
TER
ATOM 1 O3' A B 2 9.796 102.001 1.405 0.50119.46 O
ATOM 2 P U B 3 8.825 103.214 0.990 0.50121.11 P
ATOM 3 OP1 U B 3 9.784 104.352 0.744 0.50120.73 O
ATOM 4 OP2 U B 3 7.762 103.382 2.064 0.50120.00 O
ATOM 5 O5' U B 3 8.134 102.736 -0.398 0.50121.33 O
ATOM 6 C5' U B 3 8.938 102.496 -1.611 0.50121.26 C
ATOM 7 C4' U B 3 8.159 101.725 -2.693 0.50120.72 C
ATOM 8 O4' U B 3 7.856 100.369 -2.249 0.50121.58 O
ATOM 9 C3' U B 3 6.845 102.290 -3.230 0.50119.93 C
ATOM 10 O3' U B 3 7.108 103.267 -4.263 0.50117.62 O
ATOM 11 C2' U B 3 6.115 101.037 -3.770 0.50120.73 C
ATOM 12 O2' U B 3 6.362 100.677 -5.125 0.50120.37 O
ATOM 13 C1' U B 3 6.665 99.911 -2.879 0.50121.49 C
ATOM 14 N1 U B 3 5.731 99.456 -1.836 0.50122.13 N
ATOM 15 C2 U B 3 5.074 98.204 -1.989 0.50121.82 C
ATOM 16 O2 U B 3 5.241 97.437 -2.951 0.50120.44 O
ATOM 17 N3 U B 3 4.217 97.889 -0.961 0.50122.63 N
ATOM 18 C4 U B 3 3.949 98.652 0.169 0.50123.17 C
ATOM 19 O4 U B 3 3.156 98.222 1.020 0.50123.56 O
ATOM 20 C5 U B 3 4.663 99.901 0.242 0.50122.79 C
ATOM 21 C6 U B 3 5.504 100.248 -0.733 0.50122.51 C
ATOM 22 P G B 4 5.980 104.369 -4.672 0.50116.25 P
ATOM 23 OP1 G B 4 6.602 105.274 -5.721 0.50114.53 O
ATOM 24 OP2 G B 4 5.368 104.988 -3.444 0.50115.58 O
ATOM 25 O5' G B 4 4.815 103.521 -5.368 0.50114.97 O
TER
ATOM 2 P G A 4 5.980 104.369 -4.672 0.50116.25 P
ATOM 3 OP1 G A 4 6.602 105.274 -5.721 0.50114.53 O
ATOM 4 OP2 G A 4 5.368 104.988 -3.444 0.50115.58 O
ATOM 5 O5' G A 4 4.815 103.521 -5.368 0.50114.97 O
ATOM 6 C5' G A 4 5.039 102.874 -6.643 0.50113.90 C
ATOM 7 C4' G A 4 3.859 102.007 -7.013 0.50112.92 C
ATOM 8 O4' G A 4 3.849 100.759 -6.256 0.50114.03 O
ATOM 9 C3' G A 4 2.488 102.622 -6.770 0.50111.42 C
ATOM 10 O3' G A 4 2.128 103.542 -7.812 0.50106.25 O
ATOM 11 C2' G A 4 1.582 101.383 -6.728 0.50113.07 C
ATOM 12 O2' G A 4 1.176 100.932 -8.019 0.50112.47 O
ATOM 13 C1' G A 4 2.496 100.331 -6.076 0.50114.68 C
ATOM 14 N9 G A 4 2.219 100.184 -4.642 0.50116.18 N
ATOM 15 C8 G A 4 2.811 100.880 -3.611 0.50116.73 C
ATOM 16 N7 G A 4 2.293 100.601 -2.439 0.50117.43 N
ATOM 17 C5 G A 4 1.304 99.654 -2.706 0.50117.48 C
ATOM 18 C6 G A 4 0.375 99.003 -1.822 0.50117.72 C
ATOM 19 O6 G A 4 0.229 99.167 -0.599 0.50118.08 O
ATOM 20 N1 G A 4 -0.439 98.098 -2.506 0.50116.93 N
ATOM 21 C2 G A 4 -0.382 97.857 -3.865 0.50116.58 C
ATOM 22 N2 G A 4 -1.238 96.921 -4.324 0.50116.78 N
ATOM 23 N3 G A 4 0.457 98.479 -4.708 0.50116.42 N
ATOM 24 C4 G A 4 1.266 99.358 -4.062 0.50116.77 C
ATOM 25 P A A 5 2.127 105.146 -7.523 0.50100.98 P
ATOM 26 OP1 A A 5 3.407 105.712 -8.095 0.50101.14 O
ATOM 27 OP2 A A 5 1.823 105.379 -6.056 0.50 99.50 O
ATOM 28 O5' A A 5 0.917 105.684 -8.431 0.50 99.25 O
TER
ATOM 1 O3' A B 2 9.796 102.001 1.405 0.50119.46 O
ATOM 2 P U B 3 8.825 103.214 0.990 0.50121.11 P
ATOM 3 OP1 U B 3 9.784 104.352 0.744 0.50120.73 O
ATOM 4 OP2 U B 3 7.762 103.382 2.064 0.50120.00 O
ATOM 5 O5' U B 3 8.134 102.736 -0.398 0.50121.33 O
ATOM 6 C5' U B 3 8.938 102.496 -1.611 0.50121.26 C
ATOM 7 C4' U B 3 8.159 101.725 -2.693 0.50120.72 C
ATOM 8 O4' U B 3 7.856 100.369 -2.249 0.50121.58 O
ATOM 9 C3' U B 3 6.845 102.290 -3.230 0.50119.93 C
ATOM 10 O3' U B 3 7.108 103.267 -4.263 0.50117.62 O
ATOM 11 C2' U B 3 6.115 101.037 -3.770 0.50120.73 C
ATOM 12 O2' U B 3 6.362 100.677 -5.125 0.50120.37 O
ATOM 13 C1' U B 3 6.665 99.911 -2.879 0.50121.49 C
ATOM 14 N1 U B 3 5.731 99.456 -1.836 0.50122.13 N
ATOM 15 C2 U B 3 5.074 98.204 -1.989 0.50121.82 C
ATOM 16 O2 U B 3 5.241 97.437 -2.951 0.50120.44 O
ATOM 17 N3 U B 3 4.217 97.889 -0.961 0.50122.63 N
ATOM 18 C4 U B 3 3.949 98.652 0.169 0.50123.17 C
ATOM 19 O4 U B 3 3.156 98.222 1.020 0.50123.56 O
ATOM 20 C5 U B 3 4.663 99.901 0.242 0.50122.79 C
ATOM 21 C6 U B 3 5.504 100.248 -0.733 0.50122.51 C
ATOM 22 P G B 4 5.980 104.369 -4.672 0.50116.25 P
ATOM 23 OP1 G B 4 6.602 105.274 -5.721 0.50114.53 O
ATOM 24 OP2 G B 4 5.368 104.988 -3.444 0.50115.58 O
ATOM 25 O5' G B 4 4.815 103.521 -5.368 0.50114.97 O
TER
Atoms:
OP1: (6.602,105.274,-5.721)
OP2: (5.368,104.988,-3.444)
C3': (2.488,102.622,-6.770)
C1': (2.496,100.331,-6.076)
C5': (5.039,102.874,-6.643)
O6: (0.229,99.167,-0.599)
O4': (3.849,100.759,-6.256)
C8: (2.811,100.880,-3.611)
C2: (-0.382,97.857,-3.865)
C6: (0.375,99.003,-1.822)
C5: (1.304,99.654,-2.706)
C4: (1.266,99.358,-4.062)
P: (5.980,104.369,-4.672)
C4': (3.859,102.007,-7.013)
C2': (1.582,101.383,-6.728)
O2': (1.176,100.932,-8.019)
N1: (-0.439,98.098,-2.506)
N2: (-1.238,96.921,-4.324)
N3: (0.457,98.479,-4.708)
N7: (2.293,100.601,-2.439)
N9: (2.219,100.184,-4.642)
O5': (4.815,103.521,-5.368)
O3': (2.128,103.542,-7.812)
OP2: (5.368,104.988,-3.444)
C3': (2.488,102.622,-6.770)
C1': (2.496,100.331,-6.076)
C5': (5.039,102.874,-6.643)
O6: (0.229,99.167,-0.599)
O4': (3.849,100.759,-6.256)
C8: (2.811,100.880,-3.611)
C2: (-0.382,97.857,-3.865)
C6: (0.375,99.003,-1.822)
C5: (1.304,99.654,-2.706)
C4: (1.266,99.358,-4.062)
P: (5.980,104.369,-4.672)
C4': (3.859,102.007,-7.013)
C2': (1.582,101.383,-6.728)
O2': (1.176,100.932,-8.019)
N1: (-0.439,98.098,-2.506)
N2: (-1.238,96.921,-4.324)
N3: (0.457,98.479,-4.708)
N7: (2.293,100.601,-2.439)
N9: (2.219,100.184,-4.642)
O5': (4.815,103.521,-5.368)
O3': (2.128,103.542,-7.812)
C4: (3.949,98.652,0.169)
N3: (4.217,97.889,-0.961)
OP1: (9.784,104.352,0.744)
OP2: (7.762,103.382,2.064)
C2: (5.074,98.204,-1.989)
C1': (6.665,99.911,-2.879)
C3': (6.845,102.290,-3.230)
O5': (8.134,102.736,-0.398)
O4': (7.856,100.369,-2.249)
C5': (8.938,102.496,-1.611)
P: (8.825,103.214,0.990)
C4': (8.159,101.725,-2.693)
C2': (6.115,101.037,-3.770)
O2': (6.362,100.677,-5.125)
N1: (5.731,99.456,-1.836)
O4: (3.156,98.222,1.020)
O2: (5.241,97.437,-2.951)
C6: (5.504,100.248,-0.733)
C5: (4.663,99.901,0.242)
O3': (7.108,103.267,-4.263)
N3: (4.217,97.889,-0.961)
OP1: (9.784,104.352,0.744)
OP2: (7.762,103.382,2.064)
C2: (5.074,98.204,-1.989)
C1': (6.665,99.911,-2.879)
C3': (6.845,102.290,-3.230)
O5': (8.134,102.736,-0.398)
O4': (7.856,100.369,-2.249)
C5': (8.938,102.496,-1.611)
P: (8.825,103.214,0.990)
C4': (8.159,101.725,-2.693)
C2': (6.115,101.037,-3.770)
O2': (6.362,100.677,-5.125)
N1: (5.731,99.456,-1.836)
O4: (3.156,98.222,1.020)
O2: (5.241,97.437,-2.951)
C6: (5.504,100.248,-0.733)
C5: (4.663,99.901,0.242)
O3': (7.108,103.267,-4.263)
Image (generated by PyMOL):