Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0506:0505
Extra
PDB:
ATOM 1 O3' U A 505 21.110 141.459 64.655 1.00 37.56 O
ATOM 2 P G A 506 20.881 142.186 66.067 1.00 40.64 P
ATOM 3 OP1 G A 506 19.779 141.474 66.749 1.00 38.59 O
ATOM 4 OP2 G A 506 20.783 143.651 65.833 1.00 38.59 O
ATOM 5 O5' G A 506 22.215 141.877 66.872 1.00 41.35 O
ATOM 6 C5' G A 506 22.685 140.527 66.994 1.00 42.61 C
ATOM 7 C4' G A 506 24.067 140.501 67.593 1.00 42.09 C
ATOM 8 O4' G A 506 25.032 141.061 66.649 1.00 40.91 O
ATOM 9 C3' G A 506 24.230 141.292 68.891 1.00 41.16 C
ATOM 10 O3' G A 506 25.090 140.574 69.768 1.00 40.55 O
ATOM 11 C2' G A 506 24.921 142.563 68.409 1.00 40.80 C
ATOM 12 O2' G A 506 25.663 143.260 69.392 1.00 39.86 O
ATOM 13 C1' G A 506 25.837 141.984 67.337 1.00 40.53 C
ATOM 14 N9 G A 506 26.400 142.962 66.416 1.00 40.57 N
ATOM 15 C8 G A 506 25.816 144.117 65.952 1.00 41.28 C
ATOM 16 N7 G A 506 26.642 144.872 65.281 1.00 41.30 N
ATOM 17 C5 G A 506 27.829 144.155 65.273 1.00 41.19 C
ATOM 18 C6 G A 506 29.094 144.483 64.732 1.00 40.13 C
ATOM 19 O6 G A 506 29.439 145.521 64.165 1.00 39.27 O
ATOM 20 N1 G A 506 30.013 143.456 64.923 1.00 41.13 N
ATOM 21 C2 G A 506 29.751 142.269 65.561 1.00 41.86 C
ATOM 22 N2 G A 506 30.758 141.392 65.625 1.00 40.96 N
ATOM 23 N3 G A 506 28.583 141.964 66.095 1.00 42.33 N
ATOM 24 C4 G A 506 27.676 142.948 65.919 1.00 41.85 C
ATOM 25 P A A 507 24.841 140.631 71.349 1.00 40.37 P
ATOM 26 OP1 A A 507 23.405 140.871 71.601 1.00 42.51 O
ATOM 27 OP2 A A 507 25.844 141.550 71.936 1.00 41.33 O
ATOM 28 O5' A A 507 25.160 139.151 71.824 1.00 39.39 O
TER
ATOM 1 O3' A B 504 23.152 146.281 61.086 1.00 44.82 O
ATOM 2 P U B 505 22.974 145.941 62.645 1.00 46.33 P
ATOM 3 OP1 U B 505 21.651 146.462 63.061 1.00 45.84 O
ATOM 4 OP2 U B 505 24.191 146.388 63.364 1.00 46.05 O
ATOM 5 O5' U B 505 22.906 144.352 62.689 1.00 42.91 O
ATOM 6 C5' U B 505 21.709 143.652 62.326 1.00 39.26 C
ATOM 7 C4' U B 505 21.912 142.170 62.496 1.00 39.11 C
ATOM 8 O4' U B 505 23.023 141.753 61.667 1.00 37.55 O
ATOM 9 C3' U B 505 22.282 141.727 63.901 1.00 37.40 C
ATOM 10 O3' U B 505 21.110 141.459 64.655 1.00 37.56 O
ATOM 11 C2' U B 505 23.048 140.440 63.657 1.00 37.30 C
ATOM 12 O2' U B 505 22.162 139.355 63.503 1.00 36.18 O
ATOM 13 C1' U B 505 23.756 140.744 62.329 1.00 38.74 C
ATOM 14 N1 U B 505 25.158 141.187 62.425 1.00 41.89 N
ATOM 15 C2 U B 505 26.142 140.219 62.598 1.00 43.57 C
ATOM 16 O2 U B 505 25.902 139.029 62.686 1.00 45.04 O
ATOM 17 N3 U B 505 27.425 140.700 62.656 1.00 44.75 N
ATOM 18 C4 U B 505 27.826 142.015 62.555 1.00 44.82 C
ATOM 19 O4 U B 505 29.031 142.279 62.569 1.00 44.88 O
ATOM 20 C5 U B 505 26.758 142.956 62.385 1.00 43.84 C
ATOM 21 C6 U B 505 25.494 142.524 62.331 1.00 42.93 C
ATOM 22 P G B 506 20.881 142.186 66.067 1.00 40.64 P
ATOM 23 OP1 G B 506 19.779 141.474 66.749 1.00 38.59 O
ATOM 24 OP2 G B 506 20.783 143.651 65.833 1.00 38.59 O
ATOM 25 O5' G B 506 22.215 141.877 66.872 1.00 41.35 O
TER
ATOM 2 P G A 506 20.881 142.186 66.067 1.00 40.64 P
ATOM 3 OP1 G A 506 19.779 141.474 66.749 1.00 38.59 O
ATOM 4 OP2 G A 506 20.783 143.651 65.833 1.00 38.59 O
ATOM 5 O5' G A 506 22.215 141.877 66.872 1.00 41.35 O
ATOM 6 C5' G A 506 22.685 140.527 66.994 1.00 42.61 C
ATOM 7 C4' G A 506 24.067 140.501 67.593 1.00 42.09 C
ATOM 8 O4' G A 506 25.032 141.061 66.649 1.00 40.91 O
ATOM 9 C3' G A 506 24.230 141.292 68.891 1.00 41.16 C
ATOM 10 O3' G A 506 25.090 140.574 69.768 1.00 40.55 O
ATOM 11 C2' G A 506 24.921 142.563 68.409 1.00 40.80 C
ATOM 12 O2' G A 506 25.663 143.260 69.392 1.00 39.86 O
ATOM 13 C1' G A 506 25.837 141.984 67.337 1.00 40.53 C
ATOM 14 N9 G A 506 26.400 142.962 66.416 1.00 40.57 N
ATOM 15 C8 G A 506 25.816 144.117 65.952 1.00 41.28 C
ATOM 16 N7 G A 506 26.642 144.872 65.281 1.00 41.30 N
ATOM 17 C5 G A 506 27.829 144.155 65.273 1.00 41.19 C
ATOM 18 C6 G A 506 29.094 144.483 64.732 1.00 40.13 C
ATOM 19 O6 G A 506 29.439 145.521 64.165 1.00 39.27 O
ATOM 20 N1 G A 506 30.013 143.456 64.923 1.00 41.13 N
ATOM 21 C2 G A 506 29.751 142.269 65.561 1.00 41.86 C
ATOM 22 N2 G A 506 30.758 141.392 65.625 1.00 40.96 N
ATOM 23 N3 G A 506 28.583 141.964 66.095 1.00 42.33 N
ATOM 24 C4 G A 506 27.676 142.948 65.919 1.00 41.85 C
ATOM 25 P A A 507 24.841 140.631 71.349 1.00 40.37 P
ATOM 26 OP1 A A 507 23.405 140.871 71.601 1.00 42.51 O
ATOM 27 OP2 A A 507 25.844 141.550 71.936 1.00 41.33 O
ATOM 28 O5' A A 507 25.160 139.151 71.824 1.00 39.39 O
TER
ATOM 1 O3' A B 504 23.152 146.281 61.086 1.00 44.82 O
ATOM 2 P U B 505 22.974 145.941 62.645 1.00 46.33 P
ATOM 3 OP1 U B 505 21.651 146.462 63.061 1.00 45.84 O
ATOM 4 OP2 U B 505 24.191 146.388 63.364 1.00 46.05 O
ATOM 5 O5' U B 505 22.906 144.352 62.689 1.00 42.91 O
ATOM 6 C5' U B 505 21.709 143.652 62.326 1.00 39.26 C
ATOM 7 C4' U B 505 21.912 142.170 62.496 1.00 39.11 C
ATOM 8 O4' U B 505 23.023 141.753 61.667 1.00 37.55 O
ATOM 9 C3' U B 505 22.282 141.727 63.901 1.00 37.40 C
ATOM 10 O3' U B 505 21.110 141.459 64.655 1.00 37.56 O
ATOM 11 C2' U B 505 23.048 140.440 63.657 1.00 37.30 C
ATOM 12 O2' U B 505 22.162 139.355 63.503 1.00 36.18 O
ATOM 13 C1' U B 505 23.756 140.744 62.329 1.00 38.74 C
ATOM 14 N1 U B 505 25.158 141.187 62.425 1.00 41.89 N
ATOM 15 C2 U B 505 26.142 140.219 62.598 1.00 43.57 C
ATOM 16 O2 U B 505 25.902 139.029 62.686 1.00 45.04 O
ATOM 17 N3 U B 505 27.425 140.700 62.656 1.00 44.75 N
ATOM 18 C4 U B 505 27.826 142.015 62.555 1.00 44.82 C
ATOM 19 O4 U B 505 29.031 142.279 62.569 1.00 44.88 O
ATOM 20 C5 U B 505 26.758 142.956 62.385 1.00 43.84 C
ATOM 21 C6 U B 505 25.494 142.524 62.331 1.00 42.93 C
ATOM 22 P G B 506 20.881 142.186 66.067 1.00 40.64 P
ATOM 23 OP1 G B 506 19.779 141.474 66.749 1.00 38.59 O
ATOM 24 OP2 G B 506 20.783 143.651 65.833 1.00 38.59 O
ATOM 25 O5' G B 506 22.215 141.877 66.872 1.00 41.35 O
TER
Atoms:
OP1: (19.779,141.474,66.749)
OP2: (20.783,143.651,65.833)
C3': (24.230,141.292,68.891)
C1': (25.837,141.984,67.337)
C5': (22.685,140.527,66.994)
O6: (29.439,145.521,64.165)
O4': (25.032,141.061,66.649)
C8: (25.816,144.117,65.952)
C2: (29.751,142.269,65.561)
C6: (29.094,144.483,64.732)
C5: (27.829,144.155,65.273)
C4: (27.676,142.948,65.919)
P: (20.881,142.186,66.067)
C4': (24.067,140.501,67.593)
C2': (24.921,142.563,68.409)
O2': (25.663,143.260,69.392)
N1: (30.013,143.456,64.923)
N2: (30.758,141.392,65.625)
N3: (28.583,141.964,66.095)
N7: (26.642,144.872,65.281)
N9: (26.400,142.962,66.416)
O5': (22.215,141.877,66.872)
O3': (25.090,140.574,69.768)
OP2: (20.783,143.651,65.833)
C3': (24.230,141.292,68.891)
C1': (25.837,141.984,67.337)
C5': (22.685,140.527,66.994)
O6: (29.439,145.521,64.165)
O4': (25.032,141.061,66.649)
C8: (25.816,144.117,65.952)
C2: (29.751,142.269,65.561)
C6: (29.094,144.483,64.732)
C5: (27.829,144.155,65.273)
C4: (27.676,142.948,65.919)
P: (20.881,142.186,66.067)
C4': (24.067,140.501,67.593)
C2': (24.921,142.563,68.409)
O2': (25.663,143.260,69.392)
N1: (30.013,143.456,64.923)
N2: (30.758,141.392,65.625)
N3: (28.583,141.964,66.095)
N7: (26.642,144.872,65.281)
N9: (26.400,142.962,66.416)
O5': (22.215,141.877,66.872)
O3': (25.090,140.574,69.768)
C4: (27.826,142.015,62.555)
N3: (27.425,140.700,62.656)
OP1: (21.651,146.462,63.061)
OP2: (24.191,146.388,63.364)
C2: (26.142,140.219,62.598)
C1': (23.756,140.744,62.329)
C3': (22.282,141.727,63.901)
O5': (22.906,144.352,62.689)
O4': (23.023,141.753,61.667)
C5': (21.709,143.652,62.326)
P: (22.974,145.941,62.645)
C4': (21.912,142.170,62.496)
C2': (23.048,140.440,63.657)
O2': (22.162,139.355,63.503)
N1: (25.158,141.187,62.425)
O4: (29.031,142.279,62.569)
O2: (25.902,139.029,62.686)
C6: (25.494,142.524,62.331)
C5: (26.758,142.956,62.385)
O3': (21.110,141.459,64.655)
N3: (27.425,140.700,62.656)
OP1: (21.651,146.462,63.061)
OP2: (24.191,146.388,63.364)
C2: (26.142,140.219,62.598)
C1': (23.756,140.744,62.329)
C3': (22.282,141.727,63.901)
O5': (22.906,144.352,62.689)
O4': (23.023,141.753,61.667)
C5': (21.709,143.652,62.326)
P: (22.974,145.941,62.645)
C4': (21.912,142.170,62.496)
C2': (23.048,140.440,63.657)
O2': (22.162,139.355,63.503)
N1: (25.158,141.187,62.425)
O4: (29.031,142.279,62.569)
O2: (25.902,139.029,62.686)
C6: (25.494,142.524,62.331)
C5: (26.758,142.956,62.385)
O3': (21.110,141.459,64.655)
Image (generated by PyMOL):