Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NDB:M129:M128
Extra
PDB:
ATOM 1 O3' U A 128 -26.735 25.864-132.447 1.00134.57 O
ATOM 2 P G A 129 -26.265 24.338-132.610 1.00160.49 P
ATOM 3 OP1 G A 129 -24.831 24.277-132.253 1.00162.95 O
ATOM 4 OP2 G A 129 -26.716 23.885-133.942 1.00159.18 O
ATOM 5 O5' G A 129 -27.062 23.463-131.546 1.00163.81 O
ATOM 6 C5' G A 129 -26.776 22.073-131.573 1.00169.56 C
ATOM 7 C4' G A 129 -26.149 21.540-130.294 1.00175.76 C
ATOM 8 O4' G A 129 -25.791 22.594-129.361 1.00177.05 O
ATOM 9 C3' G A 129 -27.125 20.666-129.527 1.00179.32 C
ATOM 10 O3' G A 129 -26.989 19.331-129.992 1.00183.55 O
ATOM 11 C2' G A 129 -26.734 20.914-128.070 1.00182.38 C
ATOM 12 O2' G A 129 -25.525 20.310-127.685 1.00186.44 O
ATOM 13 C1' G A 129 -26.478 22.399-128.147 1.00179.88 C
ATOM 14 N9 G A 129 -27.706 23.171-128.175 1.00177.51 N
ATOM 15 C8 G A 129 -28.673 23.298-129.157 1.00174.81 C
ATOM 16 N7 G A 129 -29.665 24.079-128.859 1.00173.26 N
ATOM 17 C5 G A 129 -29.315 24.488-127.586 1.00176.08 C
ATOM 18 C6 G A 129 -30.000 25.352-126.727 1.00176.70 C
ATOM 19 O6 G A 129 -31.071 25.922-126.972 1.00174.24 O
ATOM 20 N1 G A 129 -29.307 25.511-125.512 1.00180.70 N
ATOM 21 C2 G A 129 -28.094 24.908-125.186 1.00183.23 C
ATOM 22 N2 G A 129 -27.556 25.170-123.980 1.00187.31 N
ATOM 23 N3 G A 129 -27.447 24.089-125.997 1.00181.94 N
ATOM 24 C4 G A 129 -28.123 23.941-127.155 1.00178.52 C
ATOM 25 P C A 130 -27.854 18.786-131.235 1.00183.43 P
ATOM 26 OP1 C A 130 -26.931 18.591-132.382 1.00181.98 O
ATOM 27 OP2 C A 130 -29.051 19.645-131.436 1.00180.37 O
ATOM 28 O5' C A 130 -28.289 17.352-130.641 1.00189.73 O
TER
ATOM 1 O3' G B 127 -29.157 30.985-133.174 1.00106.89 O
ATOM 2 P U B 128 -28.832 29.429-133.146 1.00110.11 P
ATOM 3 OP1 U B 128 -29.009 28.827-134.494 1.00112.43 O
ATOM 4 OP2 U B 128 -29.607 28.913-131.992 1.00110.12 O
ATOM 5 O5' U B 128 -27.265 29.368-132.811 1.00116.35 O
ATOM 6 C5' U B 128 -26.765 29.136-131.492 1.00122.51 C
ATOM 7 C4' U B 128 -25.948 27.872-131.315 1.00130.39 C
ATOM 8 O4' U B 128 -25.338 28.034-130.020 1.00139.75 O
ATOM 9 C3' U B 128 -26.784 26.597-131.224 1.00133.34 C
ATOM 10 O3' U B 128 -26.735 25.864-132.447 1.00134.57 O
ATOM 11 C2' U B 128 -26.260 25.868-129.981 1.00145.96 C
ATOM 12 O2' U B 128 -25.150 25.022-130.194 1.00153.86 O
ATOM 13 C1' U B 128 -25.806 27.037-129.128 1.00148.56 C
ATOM 14 N1 U B 128 -26.860 27.539-128.161 1.00148.52 N
ATOM 15 C2 U B 128 -26.555 27.463-126.806 1.00164.45 C
ATOM 16 O2 U B 128 -25.487 27.042-126.359 1.00179.11 O
ATOM 17 N3 U B 128 -27.554 27.924-125.976 1.00164.66 N
ATOM 18 C4 U B 128 -28.793 28.421-126.350 1.00150.57 C
ATOM 19 O4 U B 128 -29.559 28.790-125.468 1.00153.86 O
ATOM 20 C5 U B 128 -29.045 28.459-127.772 1.00136.56 C
ATOM 21 C6 U B 128 -28.092 28.020-128.599 1.00136.31 C
ATOM 22 P G B 129 -26.265 24.338-132.610 1.00160.49 P
ATOM 23 OP1 G B 129 -24.831 24.277-132.253 1.00162.95 O
ATOM 24 OP2 G B 129 -26.716 23.885-133.942 1.00159.18 O
ATOM 25 O5' G B 129 -27.062 23.463-131.546 1.00163.81 O
TER
ATOM 2 P G A 129 -26.265 24.338-132.610 1.00160.49 P
ATOM 3 OP1 G A 129 -24.831 24.277-132.253 1.00162.95 O
ATOM 4 OP2 G A 129 -26.716 23.885-133.942 1.00159.18 O
ATOM 5 O5' G A 129 -27.062 23.463-131.546 1.00163.81 O
ATOM 6 C5' G A 129 -26.776 22.073-131.573 1.00169.56 C
ATOM 7 C4' G A 129 -26.149 21.540-130.294 1.00175.76 C
ATOM 8 O4' G A 129 -25.791 22.594-129.361 1.00177.05 O
ATOM 9 C3' G A 129 -27.125 20.666-129.527 1.00179.32 C
ATOM 10 O3' G A 129 -26.989 19.331-129.992 1.00183.55 O
ATOM 11 C2' G A 129 -26.734 20.914-128.070 1.00182.38 C
ATOM 12 O2' G A 129 -25.525 20.310-127.685 1.00186.44 O
ATOM 13 C1' G A 129 -26.478 22.399-128.147 1.00179.88 C
ATOM 14 N9 G A 129 -27.706 23.171-128.175 1.00177.51 N
ATOM 15 C8 G A 129 -28.673 23.298-129.157 1.00174.81 C
ATOM 16 N7 G A 129 -29.665 24.079-128.859 1.00173.26 N
ATOM 17 C5 G A 129 -29.315 24.488-127.586 1.00176.08 C
ATOM 18 C6 G A 129 -30.000 25.352-126.727 1.00176.70 C
ATOM 19 O6 G A 129 -31.071 25.922-126.972 1.00174.24 O
ATOM 20 N1 G A 129 -29.307 25.511-125.512 1.00180.70 N
ATOM 21 C2 G A 129 -28.094 24.908-125.186 1.00183.23 C
ATOM 22 N2 G A 129 -27.556 25.170-123.980 1.00187.31 N
ATOM 23 N3 G A 129 -27.447 24.089-125.997 1.00181.94 N
ATOM 24 C4 G A 129 -28.123 23.941-127.155 1.00178.52 C
ATOM 25 P C A 130 -27.854 18.786-131.235 1.00183.43 P
ATOM 26 OP1 C A 130 -26.931 18.591-132.382 1.00181.98 O
ATOM 27 OP2 C A 130 -29.051 19.645-131.436 1.00180.37 O
ATOM 28 O5' C A 130 -28.289 17.352-130.641 1.00189.73 O
TER
ATOM 1 O3' G B 127 -29.157 30.985-133.174 1.00106.89 O
ATOM 2 P U B 128 -28.832 29.429-133.146 1.00110.11 P
ATOM 3 OP1 U B 128 -29.009 28.827-134.494 1.00112.43 O
ATOM 4 OP2 U B 128 -29.607 28.913-131.992 1.00110.12 O
ATOM 5 O5' U B 128 -27.265 29.368-132.811 1.00116.35 O
ATOM 6 C5' U B 128 -26.765 29.136-131.492 1.00122.51 C
ATOM 7 C4' U B 128 -25.948 27.872-131.315 1.00130.39 C
ATOM 8 O4' U B 128 -25.338 28.034-130.020 1.00139.75 O
ATOM 9 C3' U B 128 -26.784 26.597-131.224 1.00133.34 C
ATOM 10 O3' U B 128 -26.735 25.864-132.447 1.00134.57 O
ATOM 11 C2' U B 128 -26.260 25.868-129.981 1.00145.96 C
ATOM 12 O2' U B 128 -25.150 25.022-130.194 1.00153.86 O
ATOM 13 C1' U B 128 -25.806 27.037-129.128 1.00148.56 C
ATOM 14 N1 U B 128 -26.860 27.539-128.161 1.00148.52 N
ATOM 15 C2 U B 128 -26.555 27.463-126.806 1.00164.45 C
ATOM 16 O2 U B 128 -25.487 27.042-126.359 1.00179.11 O
ATOM 17 N3 U B 128 -27.554 27.924-125.976 1.00164.66 N
ATOM 18 C4 U B 128 -28.793 28.421-126.350 1.00150.57 C
ATOM 19 O4 U B 128 -29.559 28.790-125.468 1.00153.86 O
ATOM 20 C5 U B 128 -29.045 28.459-127.772 1.00136.56 C
ATOM 21 C6 U B 128 -28.092 28.020-128.599 1.00136.31 C
ATOM 22 P G B 129 -26.265 24.338-132.610 1.00160.49 P
ATOM 23 OP1 G B 129 -24.831 24.277-132.253 1.00162.95 O
ATOM 24 OP2 G B 129 -26.716 23.885-133.942 1.00159.18 O
ATOM 25 O5' G B 129 -27.062 23.463-131.546 1.00163.81 O
TER
Atoms:
OP1: (-24.831,24.277,-132.253)
OP2: (-26.716,23.885,-133.942)
C3': (-27.125,20.666,-129.527)
C1': (-26.478,22.399,-128.147)
C5': (-26.776,22.073,-131.573)
O6: (-31.071,25.922,-126.972)
O4': (-25.791,22.594,-129.361)
C8: (-28.673,23.298,-129.157)
C2: (-28.094,24.908,-125.186)
C6: (-30.000,25.352,-126.727)
C5: (-29.315,24.488,-127.586)
C4: (-28.123,23.941,-127.155)
P: (-26.265,24.338,-132.610)
C4': (-26.149,21.540,-130.294)
C2': (-26.734,20.914,-128.070)
O2': (-25.525,20.310,-127.685)
N1: (-29.307,25.511,-125.512)
N2: (-27.556,25.170,-123.980)
N3: (-27.447,24.089,-125.997)
N7: (-29.665,24.079,-128.859)
N9: (-27.706,23.171,-128.175)
O5': (-27.062,23.463,-131.546)
O3': (-26.989,19.331,-129.992)
OP2: (-26.716,23.885,-133.942)
C3': (-27.125,20.666,-129.527)
C1': (-26.478,22.399,-128.147)
C5': (-26.776,22.073,-131.573)
O6: (-31.071,25.922,-126.972)
O4': (-25.791,22.594,-129.361)
C8: (-28.673,23.298,-129.157)
C2: (-28.094,24.908,-125.186)
C6: (-30.000,25.352,-126.727)
C5: (-29.315,24.488,-127.586)
C4: (-28.123,23.941,-127.155)
P: (-26.265,24.338,-132.610)
C4': (-26.149,21.540,-130.294)
C2': (-26.734,20.914,-128.070)
O2': (-25.525,20.310,-127.685)
N1: (-29.307,25.511,-125.512)
N2: (-27.556,25.170,-123.980)
N3: (-27.447,24.089,-125.997)
N7: (-29.665,24.079,-128.859)
N9: (-27.706,23.171,-128.175)
O5': (-27.062,23.463,-131.546)
O3': (-26.989,19.331,-129.992)
C4: (-28.793,28.421,-126.350)
N3: (-27.554,27.924,-125.976)
OP1: (-29.009,28.827,-134.494)
OP2: (-29.607,28.913,-131.992)
C2: (-26.555,27.463,-126.806)
C1': (-25.806,27.037,-129.128)
C3': (-26.784,26.597,-131.224)
O5': (-27.265,29.368,-132.811)
O4': (-25.338,28.034,-130.020)
C5': (-26.765,29.136,-131.492)
P: (-28.832,29.429,-133.146)
C4': (-25.948,27.872,-131.315)
C2': (-26.260,25.868,-129.981)
O2': (-25.150,25.022,-130.194)
N1: (-26.860,27.539,-128.161)
O4: (-29.559,28.790,-125.468)
O2: (-25.487,27.042,-126.359)
C6: (-28.092,28.020,-128.599)
C5: (-29.045,28.459,-127.772)
O3': (-26.735,25.864,-132.447)
N3: (-27.554,27.924,-125.976)
OP1: (-29.009,28.827,-134.494)
OP2: (-29.607,28.913,-131.992)
C2: (-26.555,27.463,-126.806)
C1': (-25.806,27.037,-129.128)
C3': (-26.784,26.597,-131.224)
O5': (-27.265,29.368,-132.811)
O4': (-25.338,28.034,-130.020)
C5': (-26.765,29.136,-131.492)
P: (-28.832,29.429,-133.146)
C4': (-25.948,27.872,-131.315)
C2': (-26.260,25.868,-129.981)
O2': (-25.150,25.022,-130.194)
N1: (-26.860,27.539,-128.161)
O4: (-29.559,28.790,-125.468)
O2: (-25.487,27.042,-126.359)
C6: (-28.092,28.020,-128.599)
C5: (-29.045,28.459,-127.772)
O3': (-26.735,25.864,-132.447)
Image (generated by PyMOL):