Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NVI:E4:E3
Extra
PDB:
ATOM 1 O3' U A 3 -6.319 -12.906 -6.645 1.00 82.17 O
ATOM 2 P G A 4 -5.112 -12.689 -7.683 1.00 97.22 P
ATOM 3 OP1 G A 4 -5.649 -12.993 -9.034 1.00 99.76 O
ATOM 4 OP2 G A 4 -3.950 -13.472 -7.183 1.00 87.52 O
ATOM 5 O5' G A 4 -4.810 -11.132 -7.561 1.00 90.60 O
ATOM 6 C5' G A 4 -5.833 -10.213 -7.194 1.00 89.17 C
ATOM 7 C4' G A 4 -5.247 -8.985 -6.552 1.00 87.21 C
ATOM 8 O4' G A 4 -4.730 -9.352 -5.240 1.00 87.57 O
ATOM 9 C3' G A 4 -4.076 -8.374 -7.317 1.00 84.41 C
ATOM 10 O3' G A 4 -4.085 -6.955 -7.180 1.00 90.49 O
ATOM 11 C2' G A 4 -2.864 -8.956 -6.606 1.00 81.55 C
ATOM 12 O2' G A 4 -1.686 -8.182 -6.709 1.00 84.24 O
ATOM 13 C1' G A 4 -3.354 -9.051 -5.166 1.00 81.82 C
ATOM 14 N9 G A 4 -2.664 -10.094 -4.397 1.00 75.40 N
ATOM 15 C8 G A 4 -2.238 -11.301 -4.894 1.00 73.18 C
ATOM 16 N7 G A 4 -1.561 -12.004 -4.037 1.00 72.83 N
ATOM 17 C5 G A 4 -1.511 -11.187 -2.914 1.00 71.81 C
ATOM 18 C6 G A 4 -0.897 -11.413 -1.661 1.00 68.86 C
ATOM 19 O6 G A 4 -0.274 -12.421 -1.294 1.00 78.54 O
ATOM 20 N1 G A 4 -1.075 -10.332 -0.803 1.00 65.59 N
ATOM 21 C2 G A 4 -1.757 -9.179 -1.114 1.00 64.18 C
ATOM 22 N2 G A 4 -1.813 -8.260 -0.149 1.00 62.89 N
ATOM 23 N3 G A 4 -2.333 -8.946 -2.275 1.00 60.95 N
ATOM 24 C4 G A 4 -2.175 -9.995 -3.117 1.00 70.94 C
ATOM 25 P A A 5 -3.888 -6.029 -8.484 1.00 97.97 P
ATOM 26 OP1 A A 5 -4.890 -6.493 -9.499 1.00 83.09 O
ATOM 27 OP2 A A 5 -2.432 -6.062 -8.835 1.00 85.42 O
ATOM 28 O5' A A 5 -4.280 -4.582 -7.952 1.00 87.24 O
TER
ATOM 1 O3' C B 2 -4.597 -17.923 -3.585 1.00 85.00 O
ATOM 2 P U B 3 -3.625 -16.855 -4.286 1.00 87.34 P
ATOM 3 OP1 U B 3 -3.207 -17.432 -5.588 1.00 87.73 O
ATOM 4 OP2 U B 3 -2.586 -16.517 -3.283 1.00 81.63 O
ATOM 5 O5' U B 3 -4.569 -15.582 -4.525 1.00 86.08 O
ATOM 6 C5' U B 3 -5.913 -15.715 -4.991 1.00 80.83 C
ATOM 7 C4' U B 3 -6.708 -14.439 -4.772 1.00 79.69 C
ATOM 8 O4' U B 3 -6.914 -14.220 -3.353 1.00 77.20 O
ATOM 9 C3' U B 3 -6.062 -13.148 -5.273 1.00 81.60 C
ATOM 10 O3' U B 3 -6.319 -12.906 -6.645 1.00 82.17 O
ATOM 11 C2' U B 3 -6.654 -12.073 -4.364 1.00 84.34 C
ATOM 12 O2' U B 3 -7.897 -11.612 -4.870 1.00 86.17 O
ATOM 13 C1' U B 3 -6.903 -12.836 -3.063 1.00 75.68 C
ATOM 14 N1 U B 3 -5.858 -12.568 -2.051 1.00 69.33 N
ATOM 15 C2 U B 3 -5.933 -11.382 -1.374 1.00 66.30 C
ATOM 16 O2 U B 3 -6.796 -10.561 -1.581 1.00 69.29 O
ATOM 17 N3 U B 3 -4.956 -11.178 -0.445 1.00 67.47 N
ATOM 18 C4 U B 3 -3.934 -12.030 -0.112 1.00 70.97 C
ATOM 19 O4 U B 3 -3.136 -11.684 0.767 1.00 67.65 O
ATOM 20 C5 U B 3 -3.917 -13.258 -0.854 1.00 69.88 C
ATOM 21 C6 U B 3 -4.855 -13.475 -1.782 1.00 72.67 C
ATOM 22 P G B 4 -5.112 -12.689 -7.683 1.00 97.22 P
ATOM 23 OP1 G B 4 -5.649 -12.993 -9.034 1.00 99.76 O
ATOM 24 OP2 G B 4 -3.950 -13.472 -7.183 1.00 87.52 O
ATOM 25 O5' G B 4 -4.810 -11.132 -7.561 1.00 90.60 O
TER
ATOM 2 P G A 4 -5.112 -12.689 -7.683 1.00 97.22 P
ATOM 3 OP1 G A 4 -5.649 -12.993 -9.034 1.00 99.76 O
ATOM 4 OP2 G A 4 -3.950 -13.472 -7.183 1.00 87.52 O
ATOM 5 O5' G A 4 -4.810 -11.132 -7.561 1.00 90.60 O
ATOM 6 C5' G A 4 -5.833 -10.213 -7.194 1.00 89.17 C
ATOM 7 C4' G A 4 -5.247 -8.985 -6.552 1.00 87.21 C
ATOM 8 O4' G A 4 -4.730 -9.352 -5.240 1.00 87.57 O
ATOM 9 C3' G A 4 -4.076 -8.374 -7.317 1.00 84.41 C
ATOM 10 O3' G A 4 -4.085 -6.955 -7.180 1.00 90.49 O
ATOM 11 C2' G A 4 -2.864 -8.956 -6.606 1.00 81.55 C
ATOM 12 O2' G A 4 -1.686 -8.182 -6.709 1.00 84.24 O
ATOM 13 C1' G A 4 -3.354 -9.051 -5.166 1.00 81.82 C
ATOM 14 N9 G A 4 -2.664 -10.094 -4.397 1.00 75.40 N
ATOM 15 C8 G A 4 -2.238 -11.301 -4.894 1.00 73.18 C
ATOM 16 N7 G A 4 -1.561 -12.004 -4.037 1.00 72.83 N
ATOM 17 C5 G A 4 -1.511 -11.187 -2.914 1.00 71.81 C
ATOM 18 C6 G A 4 -0.897 -11.413 -1.661 1.00 68.86 C
ATOM 19 O6 G A 4 -0.274 -12.421 -1.294 1.00 78.54 O
ATOM 20 N1 G A 4 -1.075 -10.332 -0.803 1.00 65.59 N
ATOM 21 C2 G A 4 -1.757 -9.179 -1.114 1.00 64.18 C
ATOM 22 N2 G A 4 -1.813 -8.260 -0.149 1.00 62.89 N
ATOM 23 N3 G A 4 -2.333 -8.946 -2.275 1.00 60.95 N
ATOM 24 C4 G A 4 -2.175 -9.995 -3.117 1.00 70.94 C
ATOM 25 P A A 5 -3.888 -6.029 -8.484 1.00 97.97 P
ATOM 26 OP1 A A 5 -4.890 -6.493 -9.499 1.00 83.09 O
ATOM 27 OP2 A A 5 -2.432 -6.062 -8.835 1.00 85.42 O
ATOM 28 O5' A A 5 -4.280 -4.582 -7.952 1.00 87.24 O
TER
ATOM 1 O3' C B 2 -4.597 -17.923 -3.585 1.00 85.00 O
ATOM 2 P U B 3 -3.625 -16.855 -4.286 1.00 87.34 P
ATOM 3 OP1 U B 3 -3.207 -17.432 -5.588 1.00 87.73 O
ATOM 4 OP2 U B 3 -2.586 -16.517 -3.283 1.00 81.63 O
ATOM 5 O5' U B 3 -4.569 -15.582 -4.525 1.00 86.08 O
ATOM 6 C5' U B 3 -5.913 -15.715 -4.991 1.00 80.83 C
ATOM 7 C4' U B 3 -6.708 -14.439 -4.772 1.00 79.69 C
ATOM 8 O4' U B 3 -6.914 -14.220 -3.353 1.00 77.20 O
ATOM 9 C3' U B 3 -6.062 -13.148 -5.273 1.00 81.60 C
ATOM 10 O3' U B 3 -6.319 -12.906 -6.645 1.00 82.17 O
ATOM 11 C2' U B 3 -6.654 -12.073 -4.364 1.00 84.34 C
ATOM 12 O2' U B 3 -7.897 -11.612 -4.870 1.00 86.17 O
ATOM 13 C1' U B 3 -6.903 -12.836 -3.063 1.00 75.68 C
ATOM 14 N1 U B 3 -5.858 -12.568 -2.051 1.00 69.33 N
ATOM 15 C2 U B 3 -5.933 -11.382 -1.374 1.00 66.30 C
ATOM 16 O2 U B 3 -6.796 -10.561 -1.581 1.00 69.29 O
ATOM 17 N3 U B 3 -4.956 -11.178 -0.445 1.00 67.47 N
ATOM 18 C4 U B 3 -3.934 -12.030 -0.112 1.00 70.97 C
ATOM 19 O4 U B 3 -3.136 -11.684 0.767 1.00 67.65 O
ATOM 20 C5 U B 3 -3.917 -13.258 -0.854 1.00 69.88 C
ATOM 21 C6 U B 3 -4.855 -13.475 -1.782 1.00 72.67 C
ATOM 22 P G B 4 -5.112 -12.689 -7.683 1.00 97.22 P
ATOM 23 OP1 G B 4 -5.649 -12.993 -9.034 1.00 99.76 O
ATOM 24 OP2 G B 4 -3.950 -13.472 -7.183 1.00 87.52 O
ATOM 25 O5' G B 4 -4.810 -11.132 -7.561 1.00 90.60 O
TER
Atoms:
OP1: (-5.649,-12.993,-9.034)
OP2: (-3.950,-13.472,-7.183)
C3': (-4.076,-8.374,-7.317)
C1': (-3.354,-9.051,-5.166)
C5': (-5.833,-10.213,-7.194)
O6: (-0.274,-12.421,-1.294)
O4': (-4.730,-9.352,-5.240)
C8: (-2.238,-11.301,-4.894)
C2: (-1.757,-9.179,-1.114)
C6: (-0.897,-11.413,-1.661)
C5: (-1.511,-11.187,-2.914)
C4: (-2.175,-9.995,-3.117)
P: (-5.112,-12.689,-7.683)
C4': (-5.247,-8.985,-6.552)
C2': (-2.864,-8.956,-6.606)
O2': (-1.686,-8.182,-6.709)
N1: (-1.075,-10.332,-0.803)
N2: (-1.813,-8.260,-0.149)
N3: (-2.333,-8.946,-2.275)
N7: (-1.561,-12.004,-4.037)
N9: (-2.664,-10.094,-4.397)
O5': (-4.810,-11.132,-7.561)
O3': (-4.085,-6.955,-7.180)
OP2: (-3.950,-13.472,-7.183)
C3': (-4.076,-8.374,-7.317)
C1': (-3.354,-9.051,-5.166)
C5': (-5.833,-10.213,-7.194)
O6: (-0.274,-12.421,-1.294)
O4': (-4.730,-9.352,-5.240)
C8: (-2.238,-11.301,-4.894)
C2: (-1.757,-9.179,-1.114)
C6: (-0.897,-11.413,-1.661)
C5: (-1.511,-11.187,-2.914)
C4: (-2.175,-9.995,-3.117)
P: (-5.112,-12.689,-7.683)
C4': (-5.247,-8.985,-6.552)
C2': (-2.864,-8.956,-6.606)
O2': (-1.686,-8.182,-6.709)
N1: (-1.075,-10.332,-0.803)
N2: (-1.813,-8.260,-0.149)
N3: (-2.333,-8.946,-2.275)
N7: (-1.561,-12.004,-4.037)
N9: (-2.664,-10.094,-4.397)
O5': (-4.810,-11.132,-7.561)
O3': (-4.085,-6.955,-7.180)
C4: (-3.934,-12.030,-0.112)
N3: (-4.956,-11.178,-0.445)
OP1: (-3.207,-17.432,-5.588)
OP2: (-2.586,-16.517,-3.283)
C2: (-5.933,-11.382,-1.374)
C1': (-6.903,-12.836,-3.063)
C3': (-6.062,-13.148,-5.273)
O5': (-4.569,-15.582,-4.525)
O4': (-6.914,-14.220,-3.353)
C5': (-5.913,-15.715,-4.991)
P: (-3.625,-16.855,-4.286)
C4': (-6.708,-14.439,-4.772)
C2': (-6.654,-12.073,-4.364)
O2': (-7.897,-11.612,-4.870)
N1: (-5.858,-12.568,-2.051)
O4: (-3.136,-11.684,0.767)
O2: (-6.796,-10.561,-1.581)
C6: (-4.855,-13.475,-1.782)
C5: (-3.917,-13.258,-0.854)
O3': (-6.319,-12.906,-6.645)
N3: (-4.956,-11.178,-0.445)
OP1: (-3.207,-17.432,-5.588)
OP2: (-2.586,-16.517,-3.283)
C2: (-5.933,-11.382,-1.374)
C1': (-6.903,-12.836,-3.063)
C3': (-6.062,-13.148,-5.273)
O5': (-4.569,-15.582,-4.525)
O4': (-6.914,-14.220,-3.353)
C5': (-5.913,-15.715,-4.991)
P: (-3.625,-16.855,-4.286)
C4': (-6.708,-14.439,-4.772)
C2': (-6.654,-12.073,-4.364)
O2': (-7.897,-11.612,-4.870)
N1: (-5.858,-12.568,-2.051)
O4: (-3.136,-11.684,0.767)
O2: (-6.796,-10.561,-1.581)
C6: (-4.855,-13.475,-1.782)
C5: (-3.917,-13.258,-0.854)
O3': (-6.319,-12.906,-6.645)
Image (generated by PyMOL):