Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11024:11023
Extra
PDB:
ATOM 1 O3' A A1023 45.719 -92.492 44.743 1.00 69.94 O
ATOM 2 P A A1024 46.825 -91.586 45.460 1.00 70.33 P
ATOM 3 OP1 A A1024 47.029 -92.148 46.830 1.00 70.43 O
ATOM 4 OP2 A A1024 46.393 -90.154 45.327 1.00 69.58 O
ATOM 5 O5' A A1024 48.112 -91.860 44.564 1.00 70.66 O
ATOM 6 C5' A A1024 48.932 -92.988 44.796 1.00 71.26 C
ATOM 7 C4' A A1024 49.792 -93.271 43.603 1.00 71.64 C
ATOM 8 O4' A A1024 48.989 -93.127 42.422 1.00 71.72 O
ATOM 9 C3' A A1024 50.972 -92.326 43.367 1.00 71.23 C
ATOM 10 O3' A A1024 52.131 -92.676 44.133 1.00 71.36 O
ATOM 11 C2' A A1024 51.193 -92.443 41.853 1.00 71.55 C
ATOM 12 O2' A A1024 51.974 -93.602 41.539 1.00 72.28 O
ATOM 13 C1' A A1024 49.776 -92.681 41.346 1.00 71.70 C
ATOM 14 N9 A A1024 49.141 -91.481 40.772 1.00 71.14 N
ATOM 15 C8 A A1024 48.226 -90.668 41.391 1.00 70.56 C
ATOM 16 N7 A A1024 47.763 -89.711 40.628 1.00 70.18 N
ATOM 17 C5 A A1024 48.382 -89.930 39.411 1.00 70.54 C
ATOM 18 C6 A A1024 48.312 -89.247 38.194 1.00 70.42 C
ATOM 19 N6 A A1024 47.551 -88.179 38.006 1.00 69.88 N
ATOM 20 N1 A A1024 49.054 -89.701 37.169 1.00 70.88 N
ATOM 21 C2 A A1024 49.820 -90.780 37.371 1.00 71.44 C
ATOM 22 N3 A A1024 49.975 -91.512 38.473 1.00 71.62 N
ATOM 23 C4 A A1024 49.224 -91.025 39.476 1.00 71.13 C
ATOM 24 P U A1025 52.541 -91.878 45.465 1.00110.02 P
ATOM 25 OP1 U A1025 51.900 -92.555 46.610 1.00110.18 O
ATOM 26 OP2 U A1025 52.258 -90.464 45.232 1.00109.29 O
ATOM 27 O5' U A1025 54.092 -92.107 45.520 1.00110.23 O
TER
ATOM 1 O3' U B1022 43.948 -87.500 42.660 1.00 68.39 O
ATOM 2 P A B1023 42.702 -88.312 43.221 1.00 67.95 P
ATOM 3 OP1 A B1023 41.542 -87.933 42.357 1.00 67.89 O
ATOM 4 OP2 A B1023 42.631 -88.068 44.693 1.00 67.58 O
ATOM 5 O5' A B1023 43.118 -89.817 42.945 1.00 68.77 O
ATOM 6 C5' A B1023 43.067 -90.793 43.958 1.00 69.11 C
ATOM 7 C4' A B1023 43.684 -92.069 43.472 1.00 69.87 C
ATOM 8 O4' A B1023 43.333 -92.266 42.085 1.00 70.21 O
ATOM 9 C3' A B1023 45.205 -92.116 43.481 1.00 69.93 C
ATOM 10 O3' A B1023 45.719 -92.492 44.743 1.00 69.94 O
ATOM 11 C2' A B1023 45.541 -93.112 42.370 1.00 70.66 C
ATOM 12 O2' A B1023 45.474 -94.446 42.858 1.00 71.30 O
ATOM 13 C1' A B1023 44.382 -92.908 41.399 1.00 70.69 C
ATOM 14 N9 A B1023 44.741 -92.097 40.231 1.00 70.48 N
ATOM 15 C8 A B1023 44.240 -90.867 39.926 1.00 69.88 C
ATOM 16 N7 A B1023 44.672 -90.382 38.790 1.00 69.85 N
ATOM 17 C5 A B1023 45.502 -91.373 38.308 1.00 70.48 C
ATOM 18 C6 A B1023 46.257 -91.451 37.134 1.00 70.78 C
ATOM 19 N6 A B1023 46.291 -90.481 36.227 1.00 70.46 N
ATOM 20 N1 A B1023 46.975 -92.578 36.936 1.00 71.44 N
ATOM 21 C2 A B1023 46.918 -93.554 37.871 1.00 71.78 C
ATOM 22 N3 A B1023 46.237 -93.603 39.024 1.00 71.56 N
ATOM 23 C4 A B1023 45.541 -92.455 39.180 1.00 70.89 C
ATOM 24 P A B1024 46.825 -91.586 45.460 1.00 70.33 P
ATOM 25 OP1 A B1024 47.029 -92.148 46.830 1.00 70.43 O
ATOM 26 OP2 A B1024 46.393 -90.154 45.327 1.00 69.58 O
ATOM 27 O5' A B1024 48.112 -91.860 44.564 1.00 70.66 O
TER
ATOM 2 P A A1024 46.825 -91.586 45.460 1.00 70.33 P
ATOM 3 OP1 A A1024 47.029 -92.148 46.830 1.00 70.43 O
ATOM 4 OP2 A A1024 46.393 -90.154 45.327 1.00 69.58 O
ATOM 5 O5' A A1024 48.112 -91.860 44.564 1.00 70.66 O
ATOM 6 C5' A A1024 48.932 -92.988 44.796 1.00 71.26 C
ATOM 7 C4' A A1024 49.792 -93.271 43.603 1.00 71.64 C
ATOM 8 O4' A A1024 48.989 -93.127 42.422 1.00 71.72 O
ATOM 9 C3' A A1024 50.972 -92.326 43.367 1.00 71.23 C
ATOM 10 O3' A A1024 52.131 -92.676 44.133 1.00 71.36 O
ATOM 11 C2' A A1024 51.193 -92.443 41.853 1.00 71.55 C
ATOM 12 O2' A A1024 51.974 -93.602 41.539 1.00 72.28 O
ATOM 13 C1' A A1024 49.776 -92.681 41.346 1.00 71.70 C
ATOM 14 N9 A A1024 49.141 -91.481 40.772 1.00 71.14 N
ATOM 15 C8 A A1024 48.226 -90.668 41.391 1.00 70.56 C
ATOM 16 N7 A A1024 47.763 -89.711 40.628 1.00 70.18 N
ATOM 17 C5 A A1024 48.382 -89.930 39.411 1.00 70.54 C
ATOM 18 C6 A A1024 48.312 -89.247 38.194 1.00 70.42 C
ATOM 19 N6 A A1024 47.551 -88.179 38.006 1.00 69.88 N
ATOM 20 N1 A A1024 49.054 -89.701 37.169 1.00 70.88 N
ATOM 21 C2 A A1024 49.820 -90.780 37.371 1.00 71.44 C
ATOM 22 N3 A A1024 49.975 -91.512 38.473 1.00 71.62 N
ATOM 23 C4 A A1024 49.224 -91.025 39.476 1.00 71.13 C
ATOM 24 P U A1025 52.541 -91.878 45.465 1.00110.02 P
ATOM 25 OP1 U A1025 51.900 -92.555 46.610 1.00110.18 O
ATOM 26 OP2 U A1025 52.258 -90.464 45.232 1.00109.29 O
ATOM 27 O5' U A1025 54.092 -92.107 45.520 1.00110.23 O
TER
ATOM 1 O3' U B1022 43.948 -87.500 42.660 1.00 68.39 O
ATOM 2 P A B1023 42.702 -88.312 43.221 1.00 67.95 P
ATOM 3 OP1 A B1023 41.542 -87.933 42.357 1.00 67.89 O
ATOM 4 OP2 A B1023 42.631 -88.068 44.693 1.00 67.58 O
ATOM 5 O5' A B1023 43.118 -89.817 42.945 1.00 68.77 O
ATOM 6 C5' A B1023 43.067 -90.793 43.958 1.00 69.11 C
ATOM 7 C4' A B1023 43.684 -92.069 43.472 1.00 69.87 C
ATOM 8 O4' A B1023 43.333 -92.266 42.085 1.00 70.21 O
ATOM 9 C3' A B1023 45.205 -92.116 43.481 1.00 69.93 C
ATOM 10 O3' A B1023 45.719 -92.492 44.743 1.00 69.94 O
ATOM 11 C2' A B1023 45.541 -93.112 42.370 1.00 70.66 C
ATOM 12 O2' A B1023 45.474 -94.446 42.858 1.00 71.30 O
ATOM 13 C1' A B1023 44.382 -92.908 41.399 1.00 70.69 C
ATOM 14 N9 A B1023 44.741 -92.097 40.231 1.00 70.48 N
ATOM 15 C8 A B1023 44.240 -90.867 39.926 1.00 69.88 C
ATOM 16 N7 A B1023 44.672 -90.382 38.790 1.00 69.85 N
ATOM 17 C5 A B1023 45.502 -91.373 38.308 1.00 70.48 C
ATOM 18 C6 A B1023 46.257 -91.451 37.134 1.00 70.78 C
ATOM 19 N6 A B1023 46.291 -90.481 36.227 1.00 70.46 N
ATOM 20 N1 A B1023 46.975 -92.578 36.936 1.00 71.44 N
ATOM 21 C2 A B1023 46.918 -93.554 37.871 1.00 71.78 C
ATOM 22 N3 A B1023 46.237 -93.603 39.024 1.00 71.56 N
ATOM 23 C4 A B1023 45.541 -92.455 39.180 1.00 70.89 C
ATOM 24 P A B1024 46.825 -91.586 45.460 1.00 70.33 P
ATOM 25 OP1 A B1024 47.029 -92.148 46.830 1.00 70.43 O
ATOM 26 OP2 A B1024 46.393 -90.154 45.327 1.00 69.58 O
ATOM 27 O5' A B1024 48.112 -91.860 44.564 1.00 70.66 O
TER
Atoms:
OP1: (47.029,-92.148,46.830)
OP2: (46.393,-90.154,45.327)
C3': (50.972,-92.326,43.367)
C1': (49.776,-92.681,41.346)
C5': (48.932,-92.988,44.796)
O4': (48.989,-93.127,42.422)
C8: (48.226,-90.668,41.391)
O2': (51.974,-93.602,41.539)
C6: (48.312,-89.247,38.194)
C5: (48.382,-89.930,39.411)
C4: (49.224,-91.025,39.476)
P: (46.825,-91.586,45.460)
C4': (49.792,-93.271,43.603)
C2': (51.193,-92.443,41.853)
C2: (49.820,-90.780,37.371)
N1: (49.054,-89.701,37.169)
N3: (49.975,-91.512,38.473)
N6: (47.551,-88.179,38.006)
N7: (47.763,-89.711,40.628)
N9: (49.141,-91.481,40.772)
O5': (48.112,-91.860,44.564)
O3': (52.131,-92.676,44.133)
OP2: (46.393,-90.154,45.327)
C3': (50.972,-92.326,43.367)
C1': (49.776,-92.681,41.346)
C5': (48.932,-92.988,44.796)
O4': (48.989,-93.127,42.422)
C8: (48.226,-90.668,41.391)
O2': (51.974,-93.602,41.539)
C6: (48.312,-89.247,38.194)
C5: (48.382,-89.930,39.411)
C4: (49.224,-91.025,39.476)
P: (46.825,-91.586,45.460)
C4': (49.792,-93.271,43.603)
C2': (51.193,-92.443,41.853)
C2: (49.820,-90.780,37.371)
N1: (49.054,-89.701,37.169)
N3: (49.975,-91.512,38.473)
N6: (47.551,-88.179,38.006)
N7: (47.763,-89.711,40.628)
N9: (49.141,-91.481,40.772)
O5': (48.112,-91.860,44.564)
O3': (52.131,-92.676,44.133)
OP1: (41.542,-87.933,42.357)
OP2: (42.631,-88.068,44.693)
C3': (45.205,-92.116,43.481)
C1': (44.382,-92.908,41.399)
C5': (43.067,-90.793,43.958)
O4': (43.333,-92.266,42.085)
C8: (44.240,-90.867,39.926)
O2': (45.474,-94.446,42.858)
C6: (46.257,-91.451,37.134)
C5: (45.502,-91.373,38.308)
C4: (45.541,-92.455,39.180)
P: (42.702,-88.312,43.221)
C4': (43.684,-92.069,43.472)
C2': (45.541,-93.112,42.370)
C2: (46.918,-93.554,37.871)
N1: (46.975,-92.578,36.936)
N3: (46.237,-93.603,39.024)
N6: (46.291,-90.481,36.227)
N7: (44.672,-90.382,38.790)
N9: (44.741,-92.097,40.231)
O5': (43.118,-89.817,42.945)
O3': (45.719,-92.492,44.743)
OP2: (42.631,-88.068,44.693)
C3': (45.205,-92.116,43.481)
C1': (44.382,-92.908,41.399)
C5': (43.067,-90.793,43.958)
O4': (43.333,-92.266,42.085)
C8: (44.240,-90.867,39.926)
O2': (45.474,-94.446,42.858)
C6: (46.257,-91.451,37.134)
C5: (45.502,-91.373,38.308)
C4: (45.541,-92.455,39.180)
P: (42.702,-88.312,43.221)
C4': (43.684,-92.069,43.472)
C2': (45.541,-93.112,42.370)
C2: (46.918,-93.554,37.871)
N1: (46.975,-92.578,36.936)
N3: (46.237,-93.603,39.024)
N6: (46.291,-90.481,36.227)
N7: (44.672,-90.382,38.790)
N9: (44.741,-92.097,40.231)
O5': (43.118,-89.817,42.945)
O3': (45.719,-92.492,44.743)
Image (generated by PyMOL):