Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YXP:A8:A7
Extra
PDB:
ATOM 1 O3' A A 7 -10.291 -60.704 111.016 1.00 44.48 O
ATOM 2 P A A 8 -8.695 -60.633 110.917 1.00 42.70 P
ATOM 3 OP1 A A 8 -8.370 -60.584 109.450 1.00 43.42 O
ATOM 4 OP2 A A 8 -8.144 -61.727 111.758 1.00 39.61 O
ATOM 5 O5' A A 8 -8.307 -59.207 111.498 1.00 38.27 O
ATOM 6 C5' A A 8 -8.773 -58.018 110.857 1.00 36.38 C
ATOM 7 C4' A A 8 -8.435 -56.835 111.702 1.00 39.14 C
ATOM 8 O4' A A 8 -8.952 -57.121 113.023 1.00 38.95 O
ATOM 9 C3' A A 8 -6.944 -56.623 111.891 1.00 39.06 C
ATOM 10 O3' A A 8 -6.720 -55.281 112.264 1.00 42.22 O
ATOM 11 C2' A A 8 -6.650 -57.484 113.100 1.00 39.69 C
ATOM 12 O2' A A 8 -5.510 -57.028 113.782 1.00 40.70 O
ATOM 13 C1' A A 8 -7.895 -57.226 113.941 1.00 37.55 C
ATOM 14 N9 A A 8 -8.175 -58.337 114.841 1.00 35.17 N
ATOM 15 C8 A A 8 -8.340 -59.659 114.504 1.00 34.58 C
ATOM 16 N7 A A 8 -8.448 -60.455 115.540 1.00 33.60 N
ATOM 17 C5 A A 8 -8.383 -59.592 116.630 1.00 32.05 C
ATOM 18 C6 A A 8 -8.420 -59.821 118.010 1.00 32.40 C
ATOM 19 N6 A A 8 -8.507 -61.041 118.548 1.00 31.10 N
ATOM 20 N1 A A 8 -8.353 -58.751 118.829 1.00 28.71 N
ATOM 21 C2 A A 8 -8.243 -57.531 118.277 1.00 30.31 C
ATOM 22 N3 A A 8 -8.182 -57.192 116.989 1.00 35.90 N
ATOM 23 C4 A A 8 -8.254 -58.284 116.212 1.00 31.21 C
ATOM 24 P G A 9 -5.895 -54.310 111.291 1.00 44.98 P
ATOM 25 OP1 G A 9 -5.202 -55.147 110.283 1.00 45.03 O
ATOM 26 OP2 G A 9 -5.117 -53.358 112.142 1.00 43.81 O
ATOM 27 O5' G A 9 -7.018 -53.455 110.561 1.00 46.06 O
TER
ATOM 1 O3' G B 6 -13.049 -65.918 111.994 1.00 59.27 O
ATOM 2 P A B 7 -13.369 -64.902 113.194 1.00 60.78 P
ATOM 3 OP1 A B 7 -13.050 -65.546 114.500 1.00 61.28 O
ATOM 4 OP2 A B 7 -14.754 -64.427 112.925 1.00 59.63 O
ATOM 5 O5' A B 7 -12.382 -63.672 112.951 1.00 56.13 O
ATOM 6 C5' A B 7 -12.501 -62.887 111.766 1.00 52.07 C
ATOM 7 C4' A B 7 -12.325 -61.421 112.074 1.00 48.41 C
ATOM 8 O4' A B 7 -12.894 -61.108 113.369 1.00 46.02 O
ATOM 9 C3' A B 7 -10.914 -60.896 112.268 1.00 45.58 C
ATOM 10 O3' A B 7 -10.291 -60.704 111.016 1.00 44.48 O
ATOM 11 C2' A B 7 -11.195 -59.531 112.886 1.00 44.52 C
ATOM 12 O2' A B 7 -11.596 -58.600 111.909 1.00 44.00 O
ATOM 13 C1' A B 7 -12.417 -59.828 113.758 1.00 42.83 C
ATOM 14 N9 A B 7 -12.150 -59.804 115.198 1.00 39.66 N
ATOM 15 C8 A B 7 -12.011 -60.838 116.083 1.00 38.36 C
ATOM 16 N7 A B 7 -11.804 -60.447 117.320 1.00 39.10 N
ATOM 17 C5 A B 7 -11.803 -59.063 117.237 1.00 37.09 C
ATOM 18 C6 A B 7 -11.653 -58.059 118.203 1.00 37.67 C
ATOM 19 N6 A B 7 -11.458 -58.301 119.488 1.00 40.64 N
ATOM 20 N1 A B 7 -11.712 -56.777 117.794 1.00 39.42 N
ATOM 21 C2 A B 7 -11.913 -56.530 116.493 1.00 38.28 C
ATOM 22 N3 A B 7 -12.068 -57.388 115.491 1.00 38.48 N
ATOM 23 C4 A B 7 -12.003 -58.654 115.936 1.00 37.43 C
ATOM 24 P A B 8 -8.695 -60.633 110.917 1.00 42.70 P
ATOM 25 OP1 A B 8 -8.370 -60.584 109.450 1.00 43.42 O
ATOM 26 OP2 A B 8 -8.144 -61.727 111.758 1.00 39.61 O
ATOM 27 O5' A B 8 -8.307 -59.207 111.498 1.00 38.27 O
TER
ATOM 2 P A A 8 -8.695 -60.633 110.917 1.00 42.70 P
ATOM 3 OP1 A A 8 -8.370 -60.584 109.450 1.00 43.42 O
ATOM 4 OP2 A A 8 -8.144 -61.727 111.758 1.00 39.61 O
ATOM 5 O5' A A 8 -8.307 -59.207 111.498 1.00 38.27 O
ATOM 6 C5' A A 8 -8.773 -58.018 110.857 1.00 36.38 C
ATOM 7 C4' A A 8 -8.435 -56.835 111.702 1.00 39.14 C
ATOM 8 O4' A A 8 -8.952 -57.121 113.023 1.00 38.95 O
ATOM 9 C3' A A 8 -6.944 -56.623 111.891 1.00 39.06 C
ATOM 10 O3' A A 8 -6.720 -55.281 112.264 1.00 42.22 O
ATOM 11 C2' A A 8 -6.650 -57.484 113.100 1.00 39.69 C
ATOM 12 O2' A A 8 -5.510 -57.028 113.782 1.00 40.70 O
ATOM 13 C1' A A 8 -7.895 -57.226 113.941 1.00 37.55 C
ATOM 14 N9 A A 8 -8.175 -58.337 114.841 1.00 35.17 N
ATOM 15 C8 A A 8 -8.340 -59.659 114.504 1.00 34.58 C
ATOM 16 N7 A A 8 -8.448 -60.455 115.540 1.00 33.60 N
ATOM 17 C5 A A 8 -8.383 -59.592 116.630 1.00 32.05 C
ATOM 18 C6 A A 8 -8.420 -59.821 118.010 1.00 32.40 C
ATOM 19 N6 A A 8 -8.507 -61.041 118.548 1.00 31.10 N
ATOM 20 N1 A A 8 -8.353 -58.751 118.829 1.00 28.71 N
ATOM 21 C2 A A 8 -8.243 -57.531 118.277 1.00 30.31 C
ATOM 22 N3 A A 8 -8.182 -57.192 116.989 1.00 35.90 N
ATOM 23 C4 A A 8 -8.254 -58.284 116.212 1.00 31.21 C
ATOM 24 P G A 9 -5.895 -54.310 111.291 1.00 44.98 P
ATOM 25 OP1 G A 9 -5.202 -55.147 110.283 1.00 45.03 O
ATOM 26 OP2 G A 9 -5.117 -53.358 112.142 1.00 43.81 O
ATOM 27 O5' G A 9 -7.018 -53.455 110.561 1.00 46.06 O
TER
ATOM 1 O3' G B 6 -13.049 -65.918 111.994 1.00 59.27 O
ATOM 2 P A B 7 -13.369 -64.902 113.194 1.00 60.78 P
ATOM 3 OP1 A B 7 -13.050 -65.546 114.500 1.00 61.28 O
ATOM 4 OP2 A B 7 -14.754 -64.427 112.925 1.00 59.63 O
ATOM 5 O5' A B 7 -12.382 -63.672 112.951 1.00 56.13 O
ATOM 6 C5' A B 7 -12.501 -62.887 111.766 1.00 52.07 C
ATOM 7 C4' A B 7 -12.325 -61.421 112.074 1.00 48.41 C
ATOM 8 O4' A B 7 -12.894 -61.108 113.369 1.00 46.02 O
ATOM 9 C3' A B 7 -10.914 -60.896 112.268 1.00 45.58 C
ATOM 10 O3' A B 7 -10.291 -60.704 111.016 1.00 44.48 O
ATOM 11 C2' A B 7 -11.195 -59.531 112.886 1.00 44.52 C
ATOM 12 O2' A B 7 -11.596 -58.600 111.909 1.00 44.00 O
ATOM 13 C1' A B 7 -12.417 -59.828 113.758 1.00 42.83 C
ATOM 14 N9 A B 7 -12.150 -59.804 115.198 1.00 39.66 N
ATOM 15 C8 A B 7 -12.011 -60.838 116.083 1.00 38.36 C
ATOM 16 N7 A B 7 -11.804 -60.447 117.320 1.00 39.10 N
ATOM 17 C5 A B 7 -11.803 -59.063 117.237 1.00 37.09 C
ATOM 18 C6 A B 7 -11.653 -58.059 118.203 1.00 37.67 C
ATOM 19 N6 A B 7 -11.458 -58.301 119.488 1.00 40.64 N
ATOM 20 N1 A B 7 -11.712 -56.777 117.794 1.00 39.42 N
ATOM 21 C2 A B 7 -11.913 -56.530 116.493 1.00 38.28 C
ATOM 22 N3 A B 7 -12.068 -57.388 115.491 1.00 38.48 N
ATOM 23 C4 A B 7 -12.003 -58.654 115.936 1.00 37.43 C
ATOM 24 P A B 8 -8.695 -60.633 110.917 1.00 42.70 P
ATOM 25 OP1 A B 8 -8.370 -60.584 109.450 1.00 43.42 O
ATOM 26 OP2 A B 8 -8.144 -61.727 111.758 1.00 39.61 O
ATOM 27 O5' A B 8 -8.307 -59.207 111.498 1.00 38.27 O
TER
Atoms:
OP1: (-8.370,-60.584,109.450)
OP2: (-8.144,-61.727,111.758)
C3': (-6.944,-56.623,111.891)
C1': (-7.895,-57.226,113.941)
C5': (-8.773,-58.018,110.857)
O4': (-8.952,-57.121,113.023)
C8: (-8.340,-59.659,114.504)
O2': (-5.510,-57.028,113.782)
C6: (-8.420,-59.821,118.010)
C5: (-8.383,-59.592,116.630)
C4: (-8.254,-58.284,116.212)
P: (-8.695,-60.633,110.917)
C4': (-8.435,-56.835,111.702)
C2': (-6.650,-57.484,113.100)
C2: (-8.243,-57.531,118.277)
N1: (-8.353,-58.751,118.829)
N3: (-8.182,-57.192,116.989)
N6: (-8.507,-61.041,118.548)
N7: (-8.448,-60.455,115.540)
N9: (-8.175,-58.337,114.841)
O5': (-8.307,-59.207,111.498)
O3': (-6.720,-55.281,112.264)
OP2: (-8.144,-61.727,111.758)
C3': (-6.944,-56.623,111.891)
C1': (-7.895,-57.226,113.941)
C5': (-8.773,-58.018,110.857)
O4': (-8.952,-57.121,113.023)
C8: (-8.340,-59.659,114.504)
O2': (-5.510,-57.028,113.782)
C6: (-8.420,-59.821,118.010)
C5: (-8.383,-59.592,116.630)
C4: (-8.254,-58.284,116.212)
P: (-8.695,-60.633,110.917)
C4': (-8.435,-56.835,111.702)
C2': (-6.650,-57.484,113.100)
C2: (-8.243,-57.531,118.277)
N1: (-8.353,-58.751,118.829)
N3: (-8.182,-57.192,116.989)
N6: (-8.507,-61.041,118.548)
N7: (-8.448,-60.455,115.540)
N9: (-8.175,-58.337,114.841)
O5': (-8.307,-59.207,111.498)
O3': (-6.720,-55.281,112.264)
OP1: (-13.050,-65.546,114.500)
OP2: (-14.754,-64.427,112.925)
C3': (-10.914,-60.896,112.268)
C1': (-12.417,-59.828,113.758)
C5': (-12.501,-62.887,111.766)
O4': (-12.894,-61.108,113.369)
C8: (-12.011,-60.838,116.083)
O2': (-11.596,-58.600,111.909)
C6: (-11.653,-58.059,118.203)
C5: (-11.803,-59.063,117.237)
C4: (-12.003,-58.654,115.936)
P: (-13.369,-64.902,113.194)
C4': (-12.325,-61.421,112.074)
C2': (-11.195,-59.531,112.886)
C2: (-11.913,-56.530,116.493)
N1: (-11.712,-56.777,117.794)
N3: (-12.068,-57.388,115.491)
N6: (-11.458,-58.301,119.488)
N7: (-11.804,-60.447,117.320)
N9: (-12.150,-59.804,115.198)
O5': (-12.382,-63.672,112.951)
O3': (-10.291,-60.704,111.016)
OP2: (-14.754,-64.427,112.925)
C3': (-10.914,-60.896,112.268)
C1': (-12.417,-59.828,113.758)
C5': (-12.501,-62.887,111.766)
O4': (-12.894,-61.108,113.369)
C8: (-12.011,-60.838,116.083)
O2': (-11.596,-58.600,111.909)
C6: (-11.653,-58.059,118.203)
C5: (-11.803,-59.063,117.237)
C4: (-12.003,-58.654,115.936)
P: (-13.369,-64.902,113.194)
C4': (-12.325,-61.421,112.074)
C2': (-11.195,-59.531,112.886)
C2: (-11.913,-56.530,116.493)
N1: (-11.712,-56.777,117.794)
N3: (-12.068,-57.388,115.491)
N6: (-11.458,-58.301,119.488)
N7: (-11.804,-60.447,117.320)
N9: (-12.150,-59.804,115.198)
O5': (-12.382,-63.672,112.951)
O3': (-10.291,-60.704,111.016)
Image (generated by PyMOL):