Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:9103:9102
Extra
PDB:
ATOM 1 O3' A A 102 46.641 58.604 114.938 1.00 48.90 O
ATOM 2 P A A 103 47.345 57.385 115.703 1.00 52.18 P
ATOM 3 OP1 A A 103 47.714 56.363 114.692 1.00 51.07 O
ATOM 4 OP2 A A 103 46.496 57.002 116.863 1.00 52.80 O
ATOM 5 O5' A A 103 48.686 58.033 116.253 1.00 51.12 O
ATOM 6 C5' A A 103 49.724 58.416 115.350 1.00 52.58 C
ATOM 7 C4' A A 103 50.870 59.015 116.111 1.00 54.19 C
ATOM 8 O4' A A 103 50.469 60.285 116.688 1.00 54.60 O
ATOM 9 C3' A A 103 51.303 58.212 117.319 1.00 54.99 C
ATOM 10 O3' A A 103 52.085 57.082 116.986 1.00 54.62 O
ATOM 11 C2' A A 103 52.032 59.255 118.151 1.00 54.41 C
ATOM 12 O2' A A 103 53.337 59.542 117.690 1.00 52.51 O
ATOM 13 C1' A A 103 51.127 60.468 117.935 1.00 54.25 C
ATOM 14 N9 A A 103 50.118 60.569 118.989 1.00 54.17 N
ATOM 15 C8 A A 103 48.811 60.145 118.987 1.00 52.79 C
ATOM 16 N7 A A 103 48.182 60.378 120.113 1.00 52.46 N
ATOM 17 C5 A A 103 49.137 60.996 120.907 1.00 54.21 C
ATOM 18 C6 A A 103 49.101 61.492 122.222 1.00 55.68 C
ATOM 19 N6 A A 103 48.023 61.437 123.005 1.00 58.12 N
ATOM 20 N1 A A 103 50.228 62.054 122.713 1.00 55.75 N
ATOM 21 C2 A A 103 51.312 62.107 121.929 1.00 55.11 C
ATOM 22 N3 A A 103 51.470 61.675 120.684 1.00 54.05 N
ATOM 23 C4 A A 103 50.331 61.124 120.226 1.00 54.27 C
ATOM 24 P A A 104 52.123 55.843 117.998 1.00 54.77 P
ATOM 25 OP1 A A 104 52.902 54.758 117.341 1.00 54.16 O
ATOM 26 OP2 A A 104 50.734 55.588 118.457 1.00 53.29 O
ATOM 27 O5' A A 104 52.939 56.403 119.245 1.00 53.23 O
TER
ATOM 1 O3' G B 101 41.852 60.727 113.567 1.00 45.21 O
ATOM 2 P A B 102 41.718 59.638 114.729 1.00 44.99 P
ATOM 3 OP1 A B 102 42.298 58.363 114.228 1.00 42.56 O
ATOM 4 OP2 A B 102 40.319 59.667 115.218 1.00 43.80 O
ATOM 5 O5' A B 102 42.640 60.229 115.878 1.00 43.55 O
ATOM 6 C5' A B 102 43.911 59.644 116.152 1.00 45.71 C
ATOM 7 C4' A B 102 44.977 60.290 115.306 1.00 45.76 C
ATOM 8 O4' A B 102 45.017 61.715 115.569 1.00 45.51 O
ATOM 9 C3' A B 102 46.367 59.802 115.640 1.00 46.52 C
ATOM 10 O3' A B 102 46.641 58.604 114.938 1.00 48.90 O
ATOM 11 C2' A B 102 47.238 60.975 115.226 1.00 46.07 C
ATOM 12 O2' A B 102 47.429 61.034 113.830 1.00 47.98 O
ATOM 13 C1' A B 102 46.359 62.154 115.642 1.00 45.07 C
ATOM 14 N9 A B 102 46.590 62.630 117.005 1.00 45.43 N
ATOM 15 C8 A B 102 45.663 62.695 118.013 1.00 45.79 C
ATOM 16 N7 A B 102 46.131 63.187 119.130 1.00 46.86 N
ATOM 17 C5 A B 102 47.458 63.459 118.844 1.00 46.84 C
ATOM 18 C6 A B 102 48.490 64.004 119.617 1.00 48.42 C
ATOM 19 N6 A B 102 48.333 64.396 120.887 1.00 49.78 N
ATOM 20 N1 A B 102 49.701 64.142 119.037 1.00 48.18 N
ATOM 21 C2 A B 102 49.846 63.766 117.763 1.00 47.94 C
ATOM 22 N3 A B 102 48.947 63.249 116.931 1.00 47.99 N
ATOM 23 C4 A B 102 47.758 63.117 117.541 1.00 46.29 C
ATOM 24 P A B 103 47.345 57.385 115.703 1.00 52.18 P
ATOM 25 OP1 A B 103 47.714 56.363 114.692 1.00 51.07 O
ATOM 26 OP2 A B 103 46.496 57.002 116.863 1.00 52.80 O
ATOM 27 O5' A B 103 48.686 58.033 116.253 1.00 51.12 O
TER
ATOM 2 P A A 103 47.345 57.385 115.703 1.00 52.18 P
ATOM 3 OP1 A A 103 47.714 56.363 114.692 1.00 51.07 O
ATOM 4 OP2 A A 103 46.496 57.002 116.863 1.00 52.80 O
ATOM 5 O5' A A 103 48.686 58.033 116.253 1.00 51.12 O
ATOM 6 C5' A A 103 49.724 58.416 115.350 1.00 52.58 C
ATOM 7 C4' A A 103 50.870 59.015 116.111 1.00 54.19 C
ATOM 8 O4' A A 103 50.469 60.285 116.688 1.00 54.60 O
ATOM 9 C3' A A 103 51.303 58.212 117.319 1.00 54.99 C
ATOM 10 O3' A A 103 52.085 57.082 116.986 1.00 54.62 O
ATOM 11 C2' A A 103 52.032 59.255 118.151 1.00 54.41 C
ATOM 12 O2' A A 103 53.337 59.542 117.690 1.00 52.51 O
ATOM 13 C1' A A 103 51.127 60.468 117.935 1.00 54.25 C
ATOM 14 N9 A A 103 50.118 60.569 118.989 1.00 54.17 N
ATOM 15 C8 A A 103 48.811 60.145 118.987 1.00 52.79 C
ATOM 16 N7 A A 103 48.182 60.378 120.113 1.00 52.46 N
ATOM 17 C5 A A 103 49.137 60.996 120.907 1.00 54.21 C
ATOM 18 C6 A A 103 49.101 61.492 122.222 1.00 55.68 C
ATOM 19 N6 A A 103 48.023 61.437 123.005 1.00 58.12 N
ATOM 20 N1 A A 103 50.228 62.054 122.713 1.00 55.75 N
ATOM 21 C2 A A 103 51.312 62.107 121.929 1.00 55.11 C
ATOM 22 N3 A A 103 51.470 61.675 120.684 1.00 54.05 N
ATOM 23 C4 A A 103 50.331 61.124 120.226 1.00 54.27 C
ATOM 24 P A A 104 52.123 55.843 117.998 1.00 54.77 P
ATOM 25 OP1 A A 104 52.902 54.758 117.341 1.00 54.16 O
ATOM 26 OP2 A A 104 50.734 55.588 118.457 1.00 53.29 O
ATOM 27 O5' A A 104 52.939 56.403 119.245 1.00 53.23 O
TER
ATOM 1 O3' G B 101 41.852 60.727 113.567 1.00 45.21 O
ATOM 2 P A B 102 41.718 59.638 114.729 1.00 44.99 P
ATOM 3 OP1 A B 102 42.298 58.363 114.228 1.00 42.56 O
ATOM 4 OP2 A B 102 40.319 59.667 115.218 1.00 43.80 O
ATOM 5 O5' A B 102 42.640 60.229 115.878 1.00 43.55 O
ATOM 6 C5' A B 102 43.911 59.644 116.152 1.00 45.71 C
ATOM 7 C4' A B 102 44.977 60.290 115.306 1.00 45.76 C
ATOM 8 O4' A B 102 45.017 61.715 115.569 1.00 45.51 O
ATOM 9 C3' A B 102 46.367 59.802 115.640 1.00 46.52 C
ATOM 10 O3' A B 102 46.641 58.604 114.938 1.00 48.90 O
ATOM 11 C2' A B 102 47.238 60.975 115.226 1.00 46.07 C
ATOM 12 O2' A B 102 47.429 61.034 113.830 1.00 47.98 O
ATOM 13 C1' A B 102 46.359 62.154 115.642 1.00 45.07 C
ATOM 14 N9 A B 102 46.590 62.630 117.005 1.00 45.43 N
ATOM 15 C8 A B 102 45.663 62.695 118.013 1.00 45.79 C
ATOM 16 N7 A B 102 46.131 63.187 119.130 1.00 46.86 N
ATOM 17 C5 A B 102 47.458 63.459 118.844 1.00 46.84 C
ATOM 18 C6 A B 102 48.490 64.004 119.617 1.00 48.42 C
ATOM 19 N6 A B 102 48.333 64.396 120.887 1.00 49.78 N
ATOM 20 N1 A B 102 49.701 64.142 119.037 1.00 48.18 N
ATOM 21 C2 A B 102 49.846 63.766 117.763 1.00 47.94 C
ATOM 22 N3 A B 102 48.947 63.249 116.931 1.00 47.99 N
ATOM 23 C4 A B 102 47.758 63.117 117.541 1.00 46.29 C
ATOM 24 P A B 103 47.345 57.385 115.703 1.00 52.18 P
ATOM 25 OP1 A B 103 47.714 56.363 114.692 1.00 51.07 O
ATOM 26 OP2 A B 103 46.496 57.002 116.863 1.00 52.80 O
ATOM 27 O5' A B 103 48.686 58.033 116.253 1.00 51.12 O
TER
Atoms:
OP1: (47.714,56.363,114.692)
OP2: (46.496,57.002,116.863)
C3': (51.303,58.212,117.319)
C1': (51.127,60.468,117.935)
C5': (49.724,58.416,115.350)
O4': (50.469,60.285,116.688)
C8: (48.811,60.145,118.987)
O2': (53.337,59.542,117.690)
C6: (49.101,61.492,122.222)
C5: (49.137,60.996,120.907)
C4: (50.331,61.124,120.226)
P: (47.345,57.385,115.703)
C4': (50.870,59.015,116.111)
C2': (52.032,59.255,118.151)
C2: (51.312,62.107,121.929)
N1: (50.228,62.054,122.713)
N3: (51.470,61.675,120.684)
N6: (48.023,61.437,123.005)
N7: (48.182,60.378,120.113)
N9: (50.118,60.569,118.989)
O5': (48.686,58.033,116.253)
O3': (52.085,57.082,116.986)
OP2: (46.496,57.002,116.863)
C3': (51.303,58.212,117.319)
C1': (51.127,60.468,117.935)
C5': (49.724,58.416,115.350)
O4': (50.469,60.285,116.688)
C8: (48.811,60.145,118.987)
O2': (53.337,59.542,117.690)
C6: (49.101,61.492,122.222)
C5: (49.137,60.996,120.907)
C4: (50.331,61.124,120.226)
P: (47.345,57.385,115.703)
C4': (50.870,59.015,116.111)
C2': (52.032,59.255,118.151)
C2: (51.312,62.107,121.929)
N1: (50.228,62.054,122.713)
N3: (51.470,61.675,120.684)
N6: (48.023,61.437,123.005)
N7: (48.182,60.378,120.113)
N9: (50.118,60.569,118.989)
O5': (48.686,58.033,116.253)
O3': (52.085,57.082,116.986)
OP1: (42.298,58.363,114.228)
OP2: (40.319,59.667,115.218)
C3': (46.367,59.802,115.640)
C1': (46.359,62.154,115.642)
C5': (43.911,59.644,116.152)
O4': (45.017,61.715,115.569)
C8: (45.663,62.695,118.013)
O2': (47.429,61.034,113.830)
C6: (48.490,64.004,119.617)
C5: (47.458,63.459,118.844)
C4: (47.758,63.117,117.541)
P: (41.718,59.638,114.729)
C4': (44.977,60.290,115.306)
C2': (47.238,60.975,115.226)
C2: (49.846,63.766,117.763)
N1: (49.701,64.142,119.037)
N3: (48.947,63.249,116.931)
N6: (48.333,64.396,120.887)
N7: (46.131,63.187,119.130)
N9: (46.590,62.630,117.005)
O5': (42.640,60.229,115.878)
O3': (46.641,58.604,114.938)
OP2: (40.319,59.667,115.218)
C3': (46.367,59.802,115.640)
C1': (46.359,62.154,115.642)
C5': (43.911,59.644,116.152)
O4': (45.017,61.715,115.569)
C8: (45.663,62.695,118.013)
O2': (47.429,61.034,113.830)
C6: (48.490,64.004,119.617)
C5: (47.458,63.459,118.844)
C4: (47.758,63.117,117.541)
P: (41.718,59.638,114.729)
C4': (44.977,60.290,115.306)
C2': (47.238,60.975,115.226)
C2: (49.846,63.766,117.763)
N1: (49.701,64.142,119.037)
N3: (48.947,63.249,116.931)
N6: (48.333,64.396,120.887)
N7: (46.131,63.187,119.130)
N9: (46.590,62.630,117.005)
O5': (42.640,60.229,115.878)
O3': (46.641,58.604,114.938)
Image (generated by PyMOL):