Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0509:0508
Extra
PDB:
ATOM 1 O3' A A 508 28.169 134.924 79.103 1.00 36.37 O
ATOM 2 P A A 509 28.237 135.923 80.355 1.00 37.81 P
ATOM 3 OP1 A A 509 27.799 135.181 81.551 1.00 37.85 O
ATOM 4 OP2 A A 509 27.561 137.186 79.984 1.00 37.26 O
ATOM 5 O5' A A 509 29.790 136.211 80.537 1.00 38.72 O
ATOM 6 C5' A A 509 30.706 135.146 80.861 1.00 35.04 C
ATOM 7 C4' A A 509 32.137 135.635 80.798 1.00 33.45 C
ATOM 8 O4' A A 509 32.488 136.031 79.447 1.00 33.00 O
ATOM 9 C3' A A 509 32.454 136.870 81.613 1.00 32.58 C
ATOM 10 O3' A A 509 32.663 136.532 82.967 1.00 33.21 O
ATOM 11 C2' A A 509 33.750 137.336 80.977 1.00 34.21 C
ATOM 12 O2' A A 509 34.865 136.596 81.415 1.00 39.22 O
ATOM 13 C1' A A 509 33.497 137.020 79.504 1.00 33.60 C
ATOM 14 N9 A A 509 33.069 138.203 78.758 1.00 34.71 N
ATOM 15 C8 A A 509 31.878 138.881 78.821 1.00 35.17 C
ATOM 16 N7 A A 509 31.841 139.950 78.063 1.00 35.92 N
ATOM 17 C5 A A 509 33.086 139.968 77.449 1.00 35.71 C
ATOM 18 C6 A A 509 33.681 140.853 76.530 1.00 36.12 C
ATOM 19 N6 A A 509 33.083 141.950 76.050 1.00 37.10 N
ATOM 20 N1 A A 509 34.932 140.573 76.114 1.00 35.54 N
ATOM 21 C2 A A 509 35.538 139.489 76.592 1.00 35.67 C
ATOM 22 N3 A A 509 35.092 138.591 77.459 1.00 36.62 N
ATOM 23 C4 A A 509 33.844 138.890 77.855 1.00 35.14 C
ATOM 24 P U A 510 31.755 137.199 84.100 1.00 35.53 P
ATOM 25 OP1 U A 510 32.305 136.733 85.389 1.00 32.82 O
ATOM 26 OP2 U A 510 30.328 136.960 83.782 1.00 36.91 O
ATOM 27 O5' U A 510 32.001 138.757 83.920 1.00 34.22 O
TER
ATOM 1 O3' A B 507 24.850 136.546 74.272 1.00 37.20 O
ATOM 2 P A B 508 25.133 137.298 75.653 1.00 38.46 P
ATOM 3 OP1 A B 508 24.029 136.987 76.592 1.00 37.93 O
ATOM 4 OP2 A B 508 25.458 138.717 75.360 1.00 37.39 O
ATOM 5 O5' A B 508 26.442 136.554 76.162 1.00 38.70 O
ATOM 6 C5' A B 508 26.435 135.131 76.384 1.00 39.33 C
ATOM 7 C4' A B 508 27.826 134.647 76.702 1.00 39.34 C
ATOM 8 O4' A B 508 28.670 134.861 75.543 1.00 40.50 O
ATOM 9 C3' A B 508 28.541 135.391 77.817 1.00 37.69 C
ATOM 10 O3' A B 508 28.169 134.924 79.103 1.00 36.37 O
ATOM 11 C2' A B 508 30.004 135.130 77.496 1.00 38.07 C
ATOM 12 O2' A B 508 30.435 133.847 77.883 1.00 36.19 O
ATOM 13 C1' A B 508 29.983 135.189 75.969 1.00 40.10 C
ATOM 14 N9 A B 508 30.340 136.497 75.420 1.00 39.86 N
ATOM 15 C8 A B 508 29.518 137.548 75.104 1.00 38.01 C
ATOM 16 N7 A B 508 30.146 138.574 74.590 1.00 38.24 N
ATOM 17 C5 A B 508 31.474 138.177 74.571 1.00 40.48 C
ATOM 18 C6 A B 508 32.646 138.813 74.127 1.00 41.77 C
ATOM 19 N6 A B 508 32.666 140.034 73.574 1.00 41.97 N
ATOM 20 N1 A B 508 33.814 138.142 74.264 1.00 42.00 N
ATOM 21 C2 A B 508 33.792 136.915 74.803 1.00 40.99 C
ATOM 22 N3 A B 508 32.756 136.211 75.245 1.00 40.56 N
ATOM 23 C4 A B 508 31.611 136.906 75.096 1.00 40.72 C
ATOM 24 P A B 509 28.237 135.923 80.355 1.00 37.81 P
ATOM 25 OP1 A B 509 27.799 135.181 81.551 1.00 37.85 O
ATOM 26 OP2 A B 509 27.561 137.186 79.984 1.00 37.26 O
ATOM 27 O5' A B 509 29.790 136.211 80.537 1.00 38.72 O
TER
ATOM 2 P A A 509 28.237 135.923 80.355 1.00 37.81 P
ATOM 3 OP1 A A 509 27.799 135.181 81.551 1.00 37.85 O
ATOM 4 OP2 A A 509 27.561 137.186 79.984 1.00 37.26 O
ATOM 5 O5' A A 509 29.790 136.211 80.537 1.00 38.72 O
ATOM 6 C5' A A 509 30.706 135.146 80.861 1.00 35.04 C
ATOM 7 C4' A A 509 32.137 135.635 80.798 1.00 33.45 C
ATOM 8 O4' A A 509 32.488 136.031 79.447 1.00 33.00 O
ATOM 9 C3' A A 509 32.454 136.870 81.613 1.00 32.58 C
ATOM 10 O3' A A 509 32.663 136.532 82.967 1.00 33.21 O
ATOM 11 C2' A A 509 33.750 137.336 80.977 1.00 34.21 C
ATOM 12 O2' A A 509 34.865 136.596 81.415 1.00 39.22 O
ATOM 13 C1' A A 509 33.497 137.020 79.504 1.00 33.60 C
ATOM 14 N9 A A 509 33.069 138.203 78.758 1.00 34.71 N
ATOM 15 C8 A A 509 31.878 138.881 78.821 1.00 35.17 C
ATOM 16 N7 A A 509 31.841 139.950 78.063 1.00 35.92 N
ATOM 17 C5 A A 509 33.086 139.968 77.449 1.00 35.71 C
ATOM 18 C6 A A 509 33.681 140.853 76.530 1.00 36.12 C
ATOM 19 N6 A A 509 33.083 141.950 76.050 1.00 37.10 N
ATOM 20 N1 A A 509 34.932 140.573 76.114 1.00 35.54 N
ATOM 21 C2 A A 509 35.538 139.489 76.592 1.00 35.67 C
ATOM 22 N3 A A 509 35.092 138.591 77.459 1.00 36.62 N
ATOM 23 C4 A A 509 33.844 138.890 77.855 1.00 35.14 C
ATOM 24 P U A 510 31.755 137.199 84.100 1.00 35.53 P
ATOM 25 OP1 U A 510 32.305 136.733 85.389 1.00 32.82 O
ATOM 26 OP2 U A 510 30.328 136.960 83.782 1.00 36.91 O
ATOM 27 O5' U A 510 32.001 138.757 83.920 1.00 34.22 O
TER
ATOM 1 O3' A B 507 24.850 136.546 74.272 1.00 37.20 O
ATOM 2 P A B 508 25.133 137.298 75.653 1.00 38.46 P
ATOM 3 OP1 A B 508 24.029 136.987 76.592 1.00 37.93 O
ATOM 4 OP2 A B 508 25.458 138.717 75.360 1.00 37.39 O
ATOM 5 O5' A B 508 26.442 136.554 76.162 1.00 38.70 O
ATOM 6 C5' A B 508 26.435 135.131 76.384 1.00 39.33 C
ATOM 7 C4' A B 508 27.826 134.647 76.702 1.00 39.34 C
ATOM 8 O4' A B 508 28.670 134.861 75.543 1.00 40.50 O
ATOM 9 C3' A B 508 28.541 135.391 77.817 1.00 37.69 C
ATOM 10 O3' A B 508 28.169 134.924 79.103 1.00 36.37 O
ATOM 11 C2' A B 508 30.004 135.130 77.496 1.00 38.07 C
ATOM 12 O2' A B 508 30.435 133.847 77.883 1.00 36.19 O
ATOM 13 C1' A B 508 29.983 135.189 75.969 1.00 40.10 C
ATOM 14 N9 A B 508 30.340 136.497 75.420 1.00 39.86 N
ATOM 15 C8 A B 508 29.518 137.548 75.104 1.00 38.01 C
ATOM 16 N7 A B 508 30.146 138.574 74.590 1.00 38.24 N
ATOM 17 C5 A B 508 31.474 138.177 74.571 1.00 40.48 C
ATOM 18 C6 A B 508 32.646 138.813 74.127 1.00 41.77 C
ATOM 19 N6 A B 508 32.666 140.034 73.574 1.00 41.97 N
ATOM 20 N1 A B 508 33.814 138.142 74.264 1.00 42.00 N
ATOM 21 C2 A B 508 33.792 136.915 74.803 1.00 40.99 C
ATOM 22 N3 A B 508 32.756 136.211 75.245 1.00 40.56 N
ATOM 23 C4 A B 508 31.611 136.906 75.096 1.00 40.72 C
ATOM 24 P A B 509 28.237 135.923 80.355 1.00 37.81 P
ATOM 25 OP1 A B 509 27.799 135.181 81.551 1.00 37.85 O
ATOM 26 OP2 A B 509 27.561 137.186 79.984 1.00 37.26 O
ATOM 27 O5' A B 509 29.790 136.211 80.537 1.00 38.72 O
TER
Atoms:
OP1: (27.799,135.181,81.551)
OP2: (27.561,137.186,79.984)
C3': (32.454,136.870,81.613)
C1': (33.497,137.020,79.504)
C5': (30.706,135.146,80.861)
O4': (32.488,136.031,79.447)
C8: (31.878,138.881,78.821)
O2': (34.865,136.596,81.415)
C6: (33.681,140.853,76.530)
C5: (33.086,139.968,77.449)
C4: (33.844,138.890,77.855)
P: (28.237,135.923,80.355)
C4': (32.137,135.635,80.798)
C2': (33.750,137.336,80.977)
C2: (35.538,139.489,76.592)
N1: (34.932,140.573,76.114)
N3: (35.092,138.591,77.459)
N6: (33.083,141.950,76.050)
N7: (31.841,139.950,78.063)
N9: (33.069,138.203,78.758)
O5': (29.790,136.211,80.537)
O3': (32.663,136.532,82.967)
OP2: (27.561,137.186,79.984)
C3': (32.454,136.870,81.613)
C1': (33.497,137.020,79.504)
C5': (30.706,135.146,80.861)
O4': (32.488,136.031,79.447)
C8: (31.878,138.881,78.821)
O2': (34.865,136.596,81.415)
C6: (33.681,140.853,76.530)
C5: (33.086,139.968,77.449)
C4: (33.844,138.890,77.855)
P: (28.237,135.923,80.355)
C4': (32.137,135.635,80.798)
C2': (33.750,137.336,80.977)
C2: (35.538,139.489,76.592)
N1: (34.932,140.573,76.114)
N3: (35.092,138.591,77.459)
N6: (33.083,141.950,76.050)
N7: (31.841,139.950,78.063)
N9: (33.069,138.203,78.758)
O5': (29.790,136.211,80.537)
O3': (32.663,136.532,82.967)
OP1: (24.029,136.987,76.592)
OP2: (25.458,138.717,75.360)
C3': (28.541,135.391,77.817)
C1': (29.983,135.189,75.969)
C5': (26.435,135.131,76.384)
O4': (28.670,134.861,75.543)
C8: (29.518,137.548,75.104)
O2': (30.435,133.847,77.883)
C6: (32.646,138.813,74.127)
C5: (31.474,138.177,74.571)
C4: (31.611,136.906,75.096)
P: (25.133,137.298,75.653)
C4': (27.826,134.647,76.702)
C2': (30.004,135.130,77.496)
C2: (33.792,136.915,74.803)
N1: (33.814,138.142,74.264)
N3: (32.756,136.211,75.245)
N6: (32.666,140.034,73.574)
N7: (30.146,138.574,74.590)
N9: (30.340,136.497,75.420)
O5': (26.442,136.554,76.162)
O3': (28.169,134.924,79.103)
OP2: (25.458,138.717,75.360)
C3': (28.541,135.391,77.817)
C1': (29.983,135.189,75.969)
C5': (26.435,135.131,76.384)
O4': (28.670,134.861,75.543)
C8: (29.518,137.548,75.104)
O2': (30.435,133.847,77.883)
C6: (32.646,138.813,74.127)
C5: (31.474,138.177,74.571)
C4: (31.611,136.906,75.096)
P: (25.133,137.298,75.653)
C4': (27.826,134.647,76.702)
C2': (30.004,135.130,77.496)
C2: (33.792,136.915,74.803)
N1: (33.814,138.142,74.264)
N3: (32.756,136.211,75.245)
N6: (32.666,140.034,73.574)
N7: (30.146,138.574,74.590)
N9: (30.340,136.497,75.420)
O5': (26.442,136.554,76.162)
O3': (28.169,134.924,79.103)
Image (generated by PyMOL):