Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0509:0508
Extra
PDB:
ATOM 1 O3' A A 508 28.463 135.109 79.483 1.00 43.56 O
ATOM 2 P A A 509 28.447 136.105 80.745 1.00 44.66 P
ATOM 3 OP1 A A 509 27.886 135.368 81.893 1.00 43.66 O
ATOM 4 OP2 A A 509 27.850 137.403 80.343 1.00 45.02 O
ATOM 5 O5' A A 509 29.985 136.378 81.036 1.00 46.52 O
ATOM 6 C5' A A 509 30.922 135.301 81.201 1.00 43.82 C
ATOM 7 C4' A A 509 32.328 135.837 81.106 1.00 41.81 C
ATOM 8 O4' A A 509 32.542 136.367 79.779 1.00 41.11 O
ATOM 9 C3' A A 509 32.590 137.062 81.960 1.00 40.51 C
ATOM 10 O3' A A 509 32.839 136.710 83.301 1.00 41.75 O
ATOM 11 C2' A A 509 33.831 137.646 81.309 1.00 40.58 C
ATOM 12 O2' A A 509 35.021 137.033 81.739 1.00 43.75 O
ATOM 13 C1' A A 509 33.587 137.317 79.835 1.00 41.37 C
ATOM 14 N9 A A 509 33.206 138.502 79.074 1.00 40.67 N
ATOM 15 C8 A A 509 32.051 139.230 79.159 1.00 40.87 C
ATOM 16 N7 A A 509 32.058 140.315 78.424 1.00 43.10 N
ATOM 17 C5 A A 509 33.293 140.282 77.790 1.00 42.97 C
ATOM 18 C6 A A 509 33.922 141.161 76.887 1.00 42.62 C
ATOM 19 N6 A A 509 33.368 142.294 76.458 1.00 44.24 N
ATOM 20 N1 A A 509 35.155 140.831 76.437 1.00 40.72 N
ATOM 21 C2 A A 509 35.708 139.699 76.872 1.00 39.52 C
ATOM 22 N3 A A 509 35.223 138.797 77.726 1.00 41.50 N
ATOM 23 C4 A A 509 33.997 139.154 78.156 1.00 42.05 C
ATOM 24 P U A 510 32.047 137.457 84.475 1.00 44.57 P
ATOM 25 OP1 U A 510 32.752 137.104 85.726 1.00 44.85 O
ATOM 26 OP2 U A 510 30.595 137.173 84.347 1.00 41.88 O
ATOM 27 O5' U A 510 32.297 138.996 84.172 1.00 40.64 O
TER
ATOM 1 O3' A B 507 25.076 136.737 74.627 1.00 43.20 O
ATOM 2 P A B 508 25.377 137.460 76.028 1.00 46.26 P
ATOM 3 OP1 A B 508 24.247 137.128 76.944 1.00 44.74 O
ATOM 4 OP2 A B 508 25.731 138.892 75.777 1.00 44.12 O
ATOM 5 O5' A B 508 26.684 136.718 76.551 1.00 45.72 O
ATOM 6 C5' A B 508 26.680 135.306 76.819 1.00 45.44 C
ATOM 7 C4' A B 508 28.082 134.837 77.106 1.00 44.19 C
ATOM 8 O4' A B 508 28.896 135.048 75.926 1.00 43.67 O
ATOM 9 C3' A B 508 28.811 135.603 78.197 1.00 42.55 C
ATOM 10 O3' A B 508 28.463 135.109 79.483 1.00 43.56 O
ATOM 11 C2' A B 508 30.265 135.345 77.843 1.00 42.00 C
ATOM 12 O2' A B 508 30.690 134.049 78.193 1.00 42.94 O
ATOM 13 C1' A B 508 30.210 135.400 76.317 1.00 42.68 C
ATOM 14 N9 A B 508 30.527 136.716 75.761 1.00 41.24 N
ATOM 15 C8 A B 508 29.683 137.762 75.492 1.00 39.09 C
ATOM 16 N7 A B 508 30.282 138.802 74.965 1.00 39.86 N
ATOM 17 C5 A B 508 31.612 138.415 74.884 1.00 40.22 C
ATOM 18 C6 A B 508 32.762 139.063 74.397 1.00 39.33 C
ATOM 19 N6 A B 508 32.760 140.291 73.870 1.00 37.06 N
ATOM 20 N1 A B 508 33.934 138.396 74.469 1.00 39.47 N
ATOM 21 C2 A B 508 33.941 137.165 74.995 1.00 39.06 C
ATOM 22 N3 A B 508 32.931 136.450 75.477 1.00 38.61 N
ATOM 23 C4 A B 508 31.780 137.138 75.387 1.00 40.67 C
ATOM 24 P A B 509 28.447 136.105 80.745 1.00 44.66 P
ATOM 25 OP1 A B 509 27.886 135.368 81.893 1.00 43.66 O
ATOM 26 OP2 A B 509 27.850 137.403 80.343 1.00 45.02 O
ATOM 27 O5' A B 509 29.985 136.378 81.036 1.00 46.52 O
TER
ATOM 2 P A A 509 28.447 136.105 80.745 1.00 44.66 P
ATOM 3 OP1 A A 509 27.886 135.368 81.893 1.00 43.66 O
ATOM 4 OP2 A A 509 27.850 137.403 80.343 1.00 45.02 O
ATOM 5 O5' A A 509 29.985 136.378 81.036 1.00 46.52 O
ATOM 6 C5' A A 509 30.922 135.301 81.201 1.00 43.82 C
ATOM 7 C4' A A 509 32.328 135.837 81.106 1.00 41.81 C
ATOM 8 O4' A A 509 32.542 136.367 79.779 1.00 41.11 O
ATOM 9 C3' A A 509 32.590 137.062 81.960 1.00 40.51 C
ATOM 10 O3' A A 509 32.839 136.710 83.301 1.00 41.75 O
ATOM 11 C2' A A 509 33.831 137.646 81.309 1.00 40.58 C
ATOM 12 O2' A A 509 35.021 137.033 81.739 1.00 43.75 O
ATOM 13 C1' A A 509 33.587 137.317 79.835 1.00 41.37 C
ATOM 14 N9 A A 509 33.206 138.502 79.074 1.00 40.67 N
ATOM 15 C8 A A 509 32.051 139.230 79.159 1.00 40.87 C
ATOM 16 N7 A A 509 32.058 140.315 78.424 1.00 43.10 N
ATOM 17 C5 A A 509 33.293 140.282 77.790 1.00 42.97 C
ATOM 18 C6 A A 509 33.922 141.161 76.887 1.00 42.62 C
ATOM 19 N6 A A 509 33.368 142.294 76.458 1.00 44.24 N
ATOM 20 N1 A A 509 35.155 140.831 76.437 1.00 40.72 N
ATOM 21 C2 A A 509 35.708 139.699 76.872 1.00 39.52 C
ATOM 22 N3 A A 509 35.223 138.797 77.726 1.00 41.50 N
ATOM 23 C4 A A 509 33.997 139.154 78.156 1.00 42.05 C
ATOM 24 P U A 510 32.047 137.457 84.475 1.00 44.57 P
ATOM 25 OP1 U A 510 32.752 137.104 85.726 1.00 44.85 O
ATOM 26 OP2 U A 510 30.595 137.173 84.347 1.00 41.88 O
ATOM 27 O5' U A 510 32.297 138.996 84.172 1.00 40.64 O
TER
ATOM 1 O3' A B 507 25.076 136.737 74.627 1.00 43.20 O
ATOM 2 P A B 508 25.377 137.460 76.028 1.00 46.26 P
ATOM 3 OP1 A B 508 24.247 137.128 76.944 1.00 44.74 O
ATOM 4 OP2 A B 508 25.731 138.892 75.777 1.00 44.12 O
ATOM 5 O5' A B 508 26.684 136.718 76.551 1.00 45.72 O
ATOM 6 C5' A B 508 26.680 135.306 76.819 1.00 45.44 C
ATOM 7 C4' A B 508 28.082 134.837 77.106 1.00 44.19 C
ATOM 8 O4' A B 508 28.896 135.048 75.926 1.00 43.67 O
ATOM 9 C3' A B 508 28.811 135.603 78.197 1.00 42.55 C
ATOM 10 O3' A B 508 28.463 135.109 79.483 1.00 43.56 O
ATOM 11 C2' A B 508 30.265 135.345 77.843 1.00 42.00 C
ATOM 12 O2' A B 508 30.690 134.049 78.193 1.00 42.94 O
ATOM 13 C1' A B 508 30.210 135.400 76.317 1.00 42.68 C
ATOM 14 N9 A B 508 30.527 136.716 75.761 1.00 41.24 N
ATOM 15 C8 A B 508 29.683 137.762 75.492 1.00 39.09 C
ATOM 16 N7 A B 508 30.282 138.802 74.965 1.00 39.86 N
ATOM 17 C5 A B 508 31.612 138.415 74.884 1.00 40.22 C
ATOM 18 C6 A B 508 32.762 139.063 74.397 1.00 39.33 C
ATOM 19 N6 A B 508 32.760 140.291 73.870 1.00 37.06 N
ATOM 20 N1 A B 508 33.934 138.396 74.469 1.00 39.47 N
ATOM 21 C2 A B 508 33.941 137.165 74.995 1.00 39.06 C
ATOM 22 N3 A B 508 32.931 136.450 75.477 1.00 38.61 N
ATOM 23 C4 A B 508 31.780 137.138 75.387 1.00 40.67 C
ATOM 24 P A B 509 28.447 136.105 80.745 1.00 44.66 P
ATOM 25 OP1 A B 509 27.886 135.368 81.893 1.00 43.66 O
ATOM 26 OP2 A B 509 27.850 137.403 80.343 1.00 45.02 O
ATOM 27 O5' A B 509 29.985 136.378 81.036 1.00 46.52 O
TER
Atoms:
OP1: (27.886,135.368,81.893)
OP2: (27.850,137.403,80.343)
C3': (32.590,137.062,81.960)
C1': (33.587,137.317,79.835)
C5': (30.922,135.301,81.201)
O4': (32.542,136.367,79.779)
C8: (32.051,139.230,79.159)
O2': (35.021,137.033,81.739)
C6: (33.922,141.161,76.887)
C5: (33.293,140.282,77.790)
C4: (33.997,139.154,78.156)
P: (28.447,136.105,80.745)
C4': (32.328,135.837,81.106)
C2': (33.831,137.646,81.309)
C2: (35.708,139.699,76.872)
N1: (35.155,140.831,76.437)
N3: (35.223,138.797,77.726)
N6: (33.368,142.294,76.458)
N7: (32.058,140.315,78.424)
N9: (33.206,138.502,79.074)
O5': (29.985,136.378,81.036)
O3': (32.839,136.710,83.301)
OP2: (27.850,137.403,80.343)
C3': (32.590,137.062,81.960)
C1': (33.587,137.317,79.835)
C5': (30.922,135.301,81.201)
O4': (32.542,136.367,79.779)
C8: (32.051,139.230,79.159)
O2': (35.021,137.033,81.739)
C6: (33.922,141.161,76.887)
C5: (33.293,140.282,77.790)
C4: (33.997,139.154,78.156)
P: (28.447,136.105,80.745)
C4': (32.328,135.837,81.106)
C2': (33.831,137.646,81.309)
C2: (35.708,139.699,76.872)
N1: (35.155,140.831,76.437)
N3: (35.223,138.797,77.726)
N6: (33.368,142.294,76.458)
N7: (32.058,140.315,78.424)
N9: (33.206,138.502,79.074)
O5': (29.985,136.378,81.036)
O3': (32.839,136.710,83.301)
OP1: (24.247,137.128,76.944)
OP2: (25.731,138.892,75.777)
C3': (28.811,135.603,78.197)
C1': (30.210,135.400,76.317)
C5': (26.680,135.306,76.819)
O4': (28.896,135.048,75.926)
C8: (29.683,137.762,75.492)
O2': (30.690,134.049,78.193)
C6: (32.762,139.063,74.397)
C5: (31.612,138.415,74.884)
C4: (31.780,137.138,75.387)
P: (25.377,137.460,76.028)
C4': (28.082,134.837,77.106)
C2': (30.265,135.345,77.843)
C2: (33.941,137.165,74.995)
N1: (33.934,138.396,74.469)
N3: (32.931,136.450,75.477)
N6: (32.760,140.291,73.870)
N7: (30.282,138.802,74.965)
N9: (30.527,136.716,75.761)
O5': (26.684,136.718,76.551)
O3': (28.463,135.109,79.483)
OP2: (25.731,138.892,75.777)
C3': (28.811,135.603,78.197)
C1': (30.210,135.400,76.317)
C5': (26.680,135.306,76.819)
O4': (28.896,135.048,75.926)
C8: (29.683,137.762,75.492)
O2': (30.690,134.049,78.193)
C6: (32.762,139.063,74.397)
C5: (31.612,138.415,74.884)
C4: (31.780,137.138,75.387)
P: (25.377,137.460,76.028)
C4': (28.082,134.837,77.106)
C2': (30.265,135.345,77.843)
C2: (33.941,137.165,74.995)
N1: (33.934,138.396,74.469)
N3: (32.931,136.450,75.477)
N6: (32.760,140.291,73.870)
N7: (30.282,138.802,74.965)
N9: (30.527,136.716,75.761)
O5': (26.684,136.718,76.551)
O3': (28.463,135.109,79.483)
Image (generated by PyMOL):