Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YXP:B21:B20
Extra
PDB:
ATOM 1 O3' A A 20 13.741 -34.291 103.166 1.00 60.92 O
ATOM 2 P A A 21 13.382 -32.727 103.035 1.00 63.44 P
ATOM 3 OP1 A A 21 14.654 -31.980 103.175 1.00 62.84 O
ATOM 4 OP2 A A 21 12.270 -32.442 103.973 1.00 62.77 O
ATOM 5 O5' A A 21 12.831 -32.569 101.541 1.00 58.39 O
ATOM 6 C5' A A 21 13.667 -32.886 100.406 1.00 54.85 C
ATOM 7 C4' A A 21 12.837 -33.008 99.143 1.00 52.47 C
ATOM 8 O4' A A 21 11.829 -34.045 99.320 1.00 51.44 O
ATOM 9 C3' A A 21 12.011 -31.797 98.729 1.00 51.32 C
ATOM 10 O3' A A 21 12.784 -30.801 98.070 1.00 51.92 O
ATOM 11 C2' A A 21 10.979 -32.426 97.795 1.00 49.82 C
ATOM 12 O2' A A 21 11.448 -32.688 96.492 1.00 50.20 O
ATOM 13 C1' A A 21 10.701 -33.752 98.506 1.00 48.30 C
ATOM 14 N9 A A 21 9.525 -33.619 99.357 1.00 44.79 N
ATOM 15 C8 A A 21 9.434 -33.477 100.719 1.00 43.29 C
ATOM 16 N7 A A 21 8.205 -33.316 101.150 1.00 40.91 N
ATOM 17 C5 A A 21 7.439 -33.380 99.997 1.00 39.42 C
ATOM 18 C6 A A 21 6.059 -33.298 99.777 1.00 36.53 C
ATOM 19 N6 A A 21 5.164 -33.153 100.753 1.00 33.15 N
ATOM 20 N1 A A 21 5.619 -33.381 98.508 1.00 33.43 N
ATOM 21 C2 A A 21 6.517 -33.565 97.531 1.00 38.08 C
ATOM 22 N3 A A 21 7.844 -33.681 97.612 1.00 40.33 N
ATOM 23 C4 A A 21 8.240 -33.573 98.889 1.00 41.14 C
ATOM 24 P G A 22 12.250 -29.285 98.019 1.00 52.08 P
ATOM 25 OP1 G A 22 13.296 -28.461 97.373 1.00 53.43 O
ATOM 26 OP2 G A 22 11.765 -28.920 99.375 1.00 51.22 O
ATOM 27 O5' G A 22 11.002 -29.327 97.030 1.00 49.43 O
TER
ATOM 1 O3' C B 19 11.400 -36.822 108.275 1.00 62.13 O
ATOM 2 P A B 20 11.488 -35.380 107.555 1.00 62.13 P
ATOM 3 OP1 A B 20 12.699 -34.714 108.101 1.00 63.82 O
ATOM 4 OP2 A B 20 10.165 -34.692 107.648 1.00 60.85 O
ATOM 5 O5' A B 20 11.757 -35.739 106.022 1.00 62.14 O
ATOM 6 C5' A B 20 13.025 -36.298 105.611 1.00 59.65 C
ATOM 7 C4' A B 20 13.082 -36.457 104.103 1.00 59.27 C
ATOM 8 O4' A B 20 12.143 -37.478 103.670 1.00 57.59 O
ATOM 9 C3' A B 20 12.695 -35.244 103.273 1.00 60.02 C
ATOM 10 O3' A B 20 13.741 -34.291 103.166 1.00 60.92 O
ATOM 11 C2' A B 20 12.396 -35.885 101.934 1.00 58.28 C
ATOM 12 O2' A B 20 13.593 -36.246 101.296 1.00 57.91 O
ATOM 13 C1' A B 20 11.660 -37.153 102.373 1.00 56.61 C
ATOM 14 N9 A B 20 10.218 -36.916 102.457 1.00 53.76 N
ATOM 15 C8 A B 20 9.472 -36.609 103.568 1.00 52.60 C
ATOM 16 N7 A B 20 8.202 -36.399 103.310 1.00 52.36 N
ATOM 17 C5 A B 20 8.106 -36.594 101.941 1.00 51.12 C
ATOM 18 C6 A B 20 7.025 -36.512 101.053 1.00 50.11 C
ATOM 19 N6 A B 20 5.787 -36.189 101.426 1.00 47.86 N
ATOM 20 N1 A B 20 7.260 -36.769 99.750 1.00 49.65 N
ATOM 21 C2 A B 20 8.506 -37.082 99.378 1.00 51.20 C
ATOM 22 N3 A B 20 9.606 -37.185 100.118 1.00 52.56 N
ATOM 23 C4 A B 20 9.335 -36.925 101.406 1.00 51.68 C
ATOM 24 P A B 21 13.382 -32.727 103.035 1.00 63.44 P
ATOM 25 OP1 A B 21 14.654 -31.980 103.175 1.00 62.84 O
ATOM 26 OP2 A B 21 12.270 -32.442 103.973 1.00 62.77 O
ATOM 27 O5' A B 21 12.831 -32.569 101.541 1.00 58.39 O
TER
ATOM 2 P A A 21 13.382 -32.727 103.035 1.00 63.44 P
ATOM 3 OP1 A A 21 14.654 -31.980 103.175 1.00 62.84 O
ATOM 4 OP2 A A 21 12.270 -32.442 103.973 1.00 62.77 O
ATOM 5 O5' A A 21 12.831 -32.569 101.541 1.00 58.39 O
ATOM 6 C5' A A 21 13.667 -32.886 100.406 1.00 54.85 C
ATOM 7 C4' A A 21 12.837 -33.008 99.143 1.00 52.47 C
ATOM 8 O4' A A 21 11.829 -34.045 99.320 1.00 51.44 O
ATOM 9 C3' A A 21 12.011 -31.797 98.729 1.00 51.32 C
ATOM 10 O3' A A 21 12.784 -30.801 98.070 1.00 51.92 O
ATOM 11 C2' A A 21 10.979 -32.426 97.795 1.00 49.82 C
ATOM 12 O2' A A 21 11.448 -32.688 96.492 1.00 50.20 O
ATOM 13 C1' A A 21 10.701 -33.752 98.506 1.00 48.30 C
ATOM 14 N9 A A 21 9.525 -33.619 99.357 1.00 44.79 N
ATOM 15 C8 A A 21 9.434 -33.477 100.719 1.00 43.29 C
ATOM 16 N7 A A 21 8.205 -33.316 101.150 1.00 40.91 N
ATOM 17 C5 A A 21 7.439 -33.380 99.997 1.00 39.42 C
ATOM 18 C6 A A 21 6.059 -33.298 99.777 1.00 36.53 C
ATOM 19 N6 A A 21 5.164 -33.153 100.753 1.00 33.15 N
ATOM 20 N1 A A 21 5.619 -33.381 98.508 1.00 33.43 N
ATOM 21 C2 A A 21 6.517 -33.565 97.531 1.00 38.08 C
ATOM 22 N3 A A 21 7.844 -33.681 97.612 1.00 40.33 N
ATOM 23 C4 A A 21 8.240 -33.573 98.889 1.00 41.14 C
ATOM 24 P G A 22 12.250 -29.285 98.019 1.00 52.08 P
ATOM 25 OP1 G A 22 13.296 -28.461 97.373 1.00 53.43 O
ATOM 26 OP2 G A 22 11.765 -28.920 99.375 1.00 51.22 O
ATOM 27 O5' G A 22 11.002 -29.327 97.030 1.00 49.43 O
TER
ATOM 1 O3' C B 19 11.400 -36.822 108.275 1.00 62.13 O
ATOM 2 P A B 20 11.488 -35.380 107.555 1.00 62.13 P
ATOM 3 OP1 A B 20 12.699 -34.714 108.101 1.00 63.82 O
ATOM 4 OP2 A B 20 10.165 -34.692 107.648 1.00 60.85 O
ATOM 5 O5' A B 20 11.757 -35.739 106.022 1.00 62.14 O
ATOM 6 C5' A B 20 13.025 -36.298 105.611 1.00 59.65 C
ATOM 7 C4' A B 20 13.082 -36.457 104.103 1.00 59.27 C
ATOM 8 O4' A B 20 12.143 -37.478 103.670 1.00 57.59 O
ATOM 9 C3' A B 20 12.695 -35.244 103.273 1.00 60.02 C
ATOM 10 O3' A B 20 13.741 -34.291 103.166 1.00 60.92 O
ATOM 11 C2' A B 20 12.396 -35.885 101.934 1.00 58.28 C
ATOM 12 O2' A B 20 13.593 -36.246 101.296 1.00 57.91 O
ATOM 13 C1' A B 20 11.660 -37.153 102.373 1.00 56.61 C
ATOM 14 N9 A B 20 10.218 -36.916 102.457 1.00 53.76 N
ATOM 15 C8 A B 20 9.472 -36.609 103.568 1.00 52.60 C
ATOM 16 N7 A B 20 8.202 -36.399 103.310 1.00 52.36 N
ATOM 17 C5 A B 20 8.106 -36.594 101.941 1.00 51.12 C
ATOM 18 C6 A B 20 7.025 -36.512 101.053 1.00 50.11 C
ATOM 19 N6 A B 20 5.787 -36.189 101.426 1.00 47.86 N
ATOM 20 N1 A B 20 7.260 -36.769 99.750 1.00 49.65 N
ATOM 21 C2 A B 20 8.506 -37.082 99.378 1.00 51.20 C
ATOM 22 N3 A B 20 9.606 -37.185 100.118 1.00 52.56 N
ATOM 23 C4 A B 20 9.335 -36.925 101.406 1.00 51.68 C
ATOM 24 P A B 21 13.382 -32.727 103.035 1.00 63.44 P
ATOM 25 OP1 A B 21 14.654 -31.980 103.175 1.00 62.84 O
ATOM 26 OP2 A B 21 12.270 -32.442 103.973 1.00 62.77 O
ATOM 27 O5' A B 21 12.831 -32.569 101.541 1.00 58.39 O
TER
Atoms:
OP1: (14.654,-31.980,103.175)
OP2: (12.270,-32.442,103.973)
C3': (12.011,-31.797,98.729)
C1': (10.701,-33.752,98.506)
C5': (13.667,-32.886,100.406)
O4': (11.829,-34.045,99.320)
C8: (9.434,-33.477,100.719)
O2': (11.448,-32.688,96.492)
C6: (6.059,-33.298,99.777)
C5: (7.439,-33.380,99.997)
C4: (8.240,-33.573,98.889)
P: (13.382,-32.727,103.035)
C4': (12.837,-33.008,99.143)
C2': (10.979,-32.426,97.795)
C2: (6.517,-33.565,97.531)
N1: (5.619,-33.381,98.508)
N3: (7.844,-33.681,97.612)
N6: (5.164,-33.153,100.753)
N7: (8.205,-33.316,101.150)
N9: (9.525,-33.619,99.357)
O5': (12.831,-32.569,101.541)
O3': (12.784,-30.801,98.070)
OP2: (12.270,-32.442,103.973)
C3': (12.011,-31.797,98.729)
C1': (10.701,-33.752,98.506)
C5': (13.667,-32.886,100.406)
O4': (11.829,-34.045,99.320)
C8: (9.434,-33.477,100.719)
O2': (11.448,-32.688,96.492)
C6: (6.059,-33.298,99.777)
C5: (7.439,-33.380,99.997)
C4: (8.240,-33.573,98.889)
P: (13.382,-32.727,103.035)
C4': (12.837,-33.008,99.143)
C2': (10.979,-32.426,97.795)
C2: (6.517,-33.565,97.531)
N1: (5.619,-33.381,98.508)
N3: (7.844,-33.681,97.612)
N6: (5.164,-33.153,100.753)
N7: (8.205,-33.316,101.150)
N9: (9.525,-33.619,99.357)
O5': (12.831,-32.569,101.541)
O3': (12.784,-30.801,98.070)
OP1: (12.699,-34.714,108.101)
OP2: (10.165,-34.692,107.648)
C3': (12.695,-35.244,103.273)
C1': (11.660,-37.153,102.373)
C5': (13.025,-36.298,105.611)
O4': (12.143,-37.478,103.670)
C8: (9.472,-36.609,103.568)
O2': (13.593,-36.246,101.296)
C6: (7.025,-36.512,101.053)
C5: (8.106,-36.594,101.941)
C4: (9.335,-36.925,101.406)
P: (11.488,-35.380,107.555)
C4': (13.082,-36.457,104.103)
C2': (12.396,-35.885,101.934)
C2: (8.506,-37.082,99.378)
N1: (7.260,-36.769,99.750)
N3: (9.606,-37.185,100.118)
N6: (5.787,-36.189,101.426)
N7: (8.202,-36.399,103.310)
N9: (10.218,-36.916,102.457)
O5': (11.757,-35.739,106.022)
O3': (13.741,-34.291,103.166)
OP2: (10.165,-34.692,107.648)
C3': (12.695,-35.244,103.273)
C1': (11.660,-37.153,102.373)
C5': (13.025,-36.298,105.611)
O4': (12.143,-37.478,103.670)
C8: (9.472,-36.609,103.568)
O2': (13.593,-36.246,101.296)
C6: (7.025,-36.512,101.053)
C5: (8.106,-36.594,101.941)
C4: (9.335,-36.925,101.406)
P: (11.488,-35.380,107.555)
C4': (13.082,-36.457,104.103)
C2': (12.396,-35.885,101.934)
C2: (8.506,-37.082,99.378)
N1: (7.260,-36.769,99.750)
N3: (9.606,-37.185,100.118)
N6: (5.787,-36.189,101.426)
N7: (8.202,-36.399,103.310)
N9: (10.218,-36.916,102.457)
O5': (11.757,-35.739,106.022)
O3': (13.741,-34.291,103.166)
Image (generated by PyMOL):