Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:01041:01040
Extra
PDB:
ATOM 1 O3' A A1040 37.554 101.419 101.508 1.00 40.65 O
ATOM 2 P A A1041 37.477 101.052 103.069 1.00 38.87 P
ATOM 3 OP1 A A1041 36.073 101.342 103.462 1.00 38.20 O
ATOM 4 OP2 A A1041 38.594 101.695 103.810 1.00 37.47 O
ATOM 5 O5' A A1041 37.733 99.480 103.092 1.00 37.34 O
ATOM 6 C5' A A1041 36.913 98.584 102.322 1.00 37.33 C
ATOM 7 C4' A A1041 37.770 97.532 101.666 1.00 36.87 C
ATOM 8 O4' A A1041 38.708 98.193 100.780 1.00 38.79 O
ATOM 9 C3' A A1041 38.662 96.717 102.590 1.00 37.15 C
ATOM 10 O3' A A1041 37.944 95.650 103.208 1.00 37.27 O
ATOM 11 C2' A A1041 39.756 96.237 101.641 1.00 36.75 C
ATOM 12 O2' A A1041 39.391 95.133 100.846 1.00 35.60 O
ATOM 13 C1' A A1041 39.922 97.457 100.735 1.00 38.09 C
ATOM 14 N9 A A1041 41.025 98.326 101.149 1.00 38.11 N
ATOM 15 C8 A A1041 41.107 99.155 102.243 1.00 38.45 C
ATOM 16 N7 A A1041 42.258 99.772 102.350 1.00 38.51 N
ATOM 17 C5 A A1041 42.977 99.329 101.247 1.00 36.55 C
ATOM 18 C6 A A1041 44.275 99.606 100.791 1.00 34.61 C
ATOM 19 N6 A A1041 45.119 100.431 101.404 1.00 33.54 N
ATOM 20 N1 A A1041 44.684 98.996 99.664 1.00 34.72 N
ATOM 21 C2 A A1041 43.841 98.169 99.042 1.00 35.37 C
ATOM 22 N3 A A1041 42.603 97.828 99.368 1.00 35.76 N
ATOM 23 C4 A A1041 42.226 98.448 100.496 1.00 36.49 C
ATOM 24 P C A1042 38.688 94.660 104.238 1.00 37.89 P
ATOM 25 OP1 C A1042 40.162 94.816 104.130 1.00 37.41 O
ATOM 26 OP2 C A1042 38.082 93.320 104.026 1.00 37.61 O
ATOM 27 O5' C A1042 38.238 95.169 105.679 1.00 37.84 O
TER
ATOM 1 O3' C B1039 38.505 107.140 103.154 1.00 46.96 O
ATOM 2 P A B1040 37.593 106.853 101.871 1.00 49.04 P
ATOM 3 OP1 A B1040 37.574 108.090 101.045 1.00 49.54 O
ATOM 4 OP2 A B1040 36.309 106.262 102.337 1.00 47.95 O
ATOM 5 O5' A B1040 38.415 105.752 101.068 1.00 45.73 O
ATOM 6 C5' A B1040 38.595 104.440 101.605 1.00 41.77 C
ATOM 7 C4' A B1040 38.450 103.412 100.517 1.00 39.91 C
ATOM 8 O4' A B1040 39.421 103.676 99.480 1.00 39.78 O
ATOM 9 C3' A B1040 38.738 101.993 100.969 1.00 40.51 C
ATOM 10 O3' A B1040 37.554 101.419 101.508 1.00 40.65 O
ATOM 11 C2' A B1040 39.192 101.314 99.681 1.00 40.08 C
ATOM 12 O2' A B1040 38.121 100.923 98.843 1.00 39.34 O
ATOM 13 C1' A B1040 39.949 102.453 98.997 1.00 38.93 C
ATOM 14 N9 A B1040 41.398 102.467 99.207 1.00 36.32 N
ATOM 15 C8 A B1040 42.115 103.116 100.182 1.00 34.46 C
ATOM 16 N7 A B1040 43.411 102.983 100.057 1.00 33.95 N
ATOM 17 C5 A B1040 43.558 102.179 98.934 1.00 34.12 C
ATOM 18 C6 A B1040 44.690 101.669 98.269 1.00 33.52 C
ATOM 19 N6 A B1040 45.945 101.893 98.659 1.00 33.13 N
ATOM 20 N1 A B1040 44.483 100.905 97.176 1.00 33.38 N
ATOM 21 C2 A B1040 43.230 100.667 96.790 1.00 31.73 C
ATOM 22 N3 A B1040 42.092 101.082 97.330 1.00 32.77 N
ATOM 23 C4 A B1040 42.327 101.844 98.410 1.00 34.22 C
ATOM 24 P A B1041 37.477 101.052 103.069 1.00 38.87 P
ATOM 25 OP1 A B1041 36.073 101.342 103.462 1.00 38.20 O
ATOM 26 OP2 A B1041 38.594 101.695 103.810 1.00 37.47 O
ATOM 27 O5' A B1041 37.733 99.480 103.092 1.00 37.34 O
TER
ATOM 2 P A A1041 37.477 101.052 103.069 1.00 38.87 P
ATOM 3 OP1 A A1041 36.073 101.342 103.462 1.00 38.20 O
ATOM 4 OP2 A A1041 38.594 101.695 103.810 1.00 37.47 O
ATOM 5 O5' A A1041 37.733 99.480 103.092 1.00 37.34 O
ATOM 6 C5' A A1041 36.913 98.584 102.322 1.00 37.33 C
ATOM 7 C4' A A1041 37.770 97.532 101.666 1.00 36.87 C
ATOM 8 O4' A A1041 38.708 98.193 100.780 1.00 38.79 O
ATOM 9 C3' A A1041 38.662 96.717 102.590 1.00 37.15 C
ATOM 10 O3' A A1041 37.944 95.650 103.208 1.00 37.27 O
ATOM 11 C2' A A1041 39.756 96.237 101.641 1.00 36.75 C
ATOM 12 O2' A A1041 39.391 95.133 100.846 1.00 35.60 O
ATOM 13 C1' A A1041 39.922 97.457 100.735 1.00 38.09 C
ATOM 14 N9 A A1041 41.025 98.326 101.149 1.00 38.11 N
ATOM 15 C8 A A1041 41.107 99.155 102.243 1.00 38.45 C
ATOM 16 N7 A A1041 42.258 99.772 102.350 1.00 38.51 N
ATOM 17 C5 A A1041 42.977 99.329 101.247 1.00 36.55 C
ATOM 18 C6 A A1041 44.275 99.606 100.791 1.00 34.61 C
ATOM 19 N6 A A1041 45.119 100.431 101.404 1.00 33.54 N
ATOM 20 N1 A A1041 44.684 98.996 99.664 1.00 34.72 N
ATOM 21 C2 A A1041 43.841 98.169 99.042 1.00 35.37 C
ATOM 22 N3 A A1041 42.603 97.828 99.368 1.00 35.76 N
ATOM 23 C4 A A1041 42.226 98.448 100.496 1.00 36.49 C
ATOM 24 P C A1042 38.688 94.660 104.238 1.00 37.89 P
ATOM 25 OP1 C A1042 40.162 94.816 104.130 1.00 37.41 O
ATOM 26 OP2 C A1042 38.082 93.320 104.026 1.00 37.61 O
ATOM 27 O5' C A1042 38.238 95.169 105.679 1.00 37.84 O
TER
ATOM 1 O3' C B1039 38.505 107.140 103.154 1.00 46.96 O
ATOM 2 P A B1040 37.593 106.853 101.871 1.00 49.04 P
ATOM 3 OP1 A B1040 37.574 108.090 101.045 1.00 49.54 O
ATOM 4 OP2 A B1040 36.309 106.262 102.337 1.00 47.95 O
ATOM 5 O5' A B1040 38.415 105.752 101.068 1.00 45.73 O
ATOM 6 C5' A B1040 38.595 104.440 101.605 1.00 41.77 C
ATOM 7 C4' A B1040 38.450 103.412 100.517 1.00 39.91 C
ATOM 8 O4' A B1040 39.421 103.676 99.480 1.00 39.78 O
ATOM 9 C3' A B1040 38.738 101.993 100.969 1.00 40.51 C
ATOM 10 O3' A B1040 37.554 101.419 101.508 1.00 40.65 O
ATOM 11 C2' A B1040 39.192 101.314 99.681 1.00 40.08 C
ATOM 12 O2' A B1040 38.121 100.923 98.843 1.00 39.34 O
ATOM 13 C1' A B1040 39.949 102.453 98.997 1.00 38.93 C
ATOM 14 N9 A B1040 41.398 102.467 99.207 1.00 36.32 N
ATOM 15 C8 A B1040 42.115 103.116 100.182 1.00 34.46 C
ATOM 16 N7 A B1040 43.411 102.983 100.057 1.00 33.95 N
ATOM 17 C5 A B1040 43.558 102.179 98.934 1.00 34.12 C
ATOM 18 C6 A B1040 44.690 101.669 98.269 1.00 33.52 C
ATOM 19 N6 A B1040 45.945 101.893 98.659 1.00 33.13 N
ATOM 20 N1 A B1040 44.483 100.905 97.176 1.00 33.38 N
ATOM 21 C2 A B1040 43.230 100.667 96.790 1.00 31.73 C
ATOM 22 N3 A B1040 42.092 101.082 97.330 1.00 32.77 N
ATOM 23 C4 A B1040 42.327 101.844 98.410 1.00 34.22 C
ATOM 24 P A B1041 37.477 101.052 103.069 1.00 38.87 P
ATOM 25 OP1 A B1041 36.073 101.342 103.462 1.00 38.20 O
ATOM 26 OP2 A B1041 38.594 101.695 103.810 1.00 37.47 O
ATOM 27 O5' A B1041 37.733 99.480 103.092 1.00 37.34 O
TER
Atoms:
OP1: (36.073,101.342,103.462)
OP2: (38.594,101.695,103.810)
C3': (38.662,96.717,102.590)
C1': (39.922,97.457,100.735)
C5': (36.913,98.584,102.322)
O4': (38.708,98.193,100.780)
C8: (41.107,99.155,102.243)
O2': (39.391,95.133,100.846)
C6: (44.275,99.606,100.791)
C5: (42.977,99.329,101.247)
C4: (42.226,98.448,100.496)
P: (37.477,101.052,103.069)
C4': (37.770,97.532,101.666)
C2': (39.756,96.237,101.641)
C2: (43.841,98.169,99.042)
N1: (44.684,98.996,99.664)
N3: (42.603,97.828,99.368)
N6: (45.119,100.431,101.404)
N7: (42.258,99.772,102.350)
N9: (41.025,98.326,101.149)
O5': (37.733,99.480,103.092)
O3': (37.944,95.650,103.208)
OP2: (38.594,101.695,103.810)
C3': (38.662,96.717,102.590)
C1': (39.922,97.457,100.735)
C5': (36.913,98.584,102.322)
O4': (38.708,98.193,100.780)
C8: (41.107,99.155,102.243)
O2': (39.391,95.133,100.846)
C6: (44.275,99.606,100.791)
C5: (42.977,99.329,101.247)
C4: (42.226,98.448,100.496)
P: (37.477,101.052,103.069)
C4': (37.770,97.532,101.666)
C2': (39.756,96.237,101.641)
C2: (43.841,98.169,99.042)
N1: (44.684,98.996,99.664)
N3: (42.603,97.828,99.368)
N6: (45.119,100.431,101.404)
N7: (42.258,99.772,102.350)
N9: (41.025,98.326,101.149)
O5': (37.733,99.480,103.092)
O3': (37.944,95.650,103.208)
OP1: (37.574,108.090,101.045)
OP2: (36.309,106.262,102.337)
C3': (38.738,101.993,100.969)
C1': (39.949,102.453,98.997)
C5': (38.595,104.440,101.605)
O4': (39.421,103.676,99.480)
C8: (42.115,103.116,100.182)
O2': (38.121,100.923,98.843)
C6: (44.690,101.669,98.269)
C5: (43.558,102.179,98.934)
C4: (42.327,101.844,98.410)
P: (37.593,106.853,101.871)
C4': (38.450,103.412,100.517)
C2': (39.192,101.314,99.681)
C2: (43.230,100.667,96.790)
N1: (44.483,100.905,97.176)
N3: (42.092,101.082,97.330)
N6: (45.945,101.893,98.659)
N7: (43.411,102.983,100.057)
N9: (41.398,102.467,99.207)
O5': (38.415,105.752,101.068)
O3': (37.554,101.419,101.508)
OP2: (36.309,106.262,102.337)
C3': (38.738,101.993,100.969)
C1': (39.949,102.453,98.997)
C5': (38.595,104.440,101.605)
O4': (39.421,103.676,99.480)
C8: (42.115,103.116,100.182)
O2': (38.121,100.923,98.843)
C6: (44.690,101.669,98.269)
C5: (43.558,102.179,98.934)
C4: (42.327,101.844,98.410)
P: (37.593,106.853,101.871)
C4': (38.450,103.412,100.517)
C2': (39.192,101.314,99.681)
C2: (43.230,100.667,96.790)
N1: (44.483,100.905,97.176)
N3: (42.092,101.082,97.330)
N6: (45.945,101.893,98.659)
N7: (43.411,102.983,100.057)
N9: (41.398,102.467,99.207)
O5': (38.415,105.752,101.068)
O3': (37.554,101.419,101.508)
Image (generated by PyMOL):