Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12036:12035
Extra
PDB:
ATOM 1 O3' A A2035 6.861 -58.100 103.468 1.00 72.89 O
ATOM 2 P A A2036 6.250 -56.696 103.002 1.00 68.46 P
ATOM 3 OP1 A A2036 5.460 -56.957 101.766 1.00 68.39 O
ATOM 4 OP2 A A2036 7.392 -55.715 102.925 1.00 68.04 O
ATOM 5 O5' A A2036 5.278 -56.332 104.231 1.00 68.72 O
ATOM 6 C5' A A2036 4.530 -57.353 104.876 1.00 69.23 C
ATOM 7 C4' A A2036 4.579 -57.246 106.384 1.00 69.51 C
ATOM 8 O4' A A2036 5.927 -57.465 106.872 1.00 69.51 O
ATOM 9 C3' A A2036 4.195 -55.905 106.977 1.00 69.32 C
ATOM 10 O3' A A2036 2.810 -55.694 107.017 1.00 69.45 O
ATOM 11 C2' A A2036 4.834 -55.951 108.352 1.00 69.56 C
ATOM 12 O2' A A2036 4.044 -56.696 109.249 1.00 70.06 O
ATOM 13 C1' A A2036 6.118 -56.723 108.067 1.00 69.55 C
ATOM 14 N9 A A2036 7.258 -55.807 107.883 1.00 69.12 N
ATOM 15 C8 A A2036 7.889 -55.473 106.727 1.00 68.71 C
ATOM 16 N7 A A2036 8.876 -54.652 106.918 1.00 68.42 N
ATOM 17 C5 A A2036 8.886 -54.416 108.273 1.00 68.67 C
ATOM 18 C6 A A2036 9.696 -53.612 109.082 1.00 68.56 C
ATOM 19 N6 A A2036 10.702 -52.860 108.623 1.00 68.17 N
ATOM 20 N1 A A2036 9.431 -53.606 110.402 1.00 68.91 N
ATOM 21 C2 A A2036 8.425 -54.351 110.853 1.00 69.31 C
ATOM 22 N3 A A2036 7.608 -55.144 110.178 1.00 69.44 N
ATOM 23 C4 A A2036 7.890 -55.118 108.877 1.00 69.10 C
ATOM 24 P C A2037 2.230 -54.227 106.767 1.00 64.58 P
ATOM 25 OP1 C A2037 0.753 -54.348 106.663 1.00 64.79 O
ATOM 26 OP2 C A2037 2.979 -53.643 105.624 1.00 64.08 O
ATOM 27 O5' C A2037 2.611 -53.486 108.104 1.00 64.63 O
TER
ATOM 1 O3' C B2034 12.890 -57.956 100.409 1.00 66.85 O
ATOM 2 P A B2035 11.340 -58.090 100.036 1.00 71.76 P
ATOM 3 OP1 A B2035 11.173 -59.400 99.322 1.00 72.03 O
ATOM 4 OP2 A B2035 10.982 -56.835 99.321 1.00 71.31 O
ATOM 5 O5' A B2035 10.607 -58.133 101.473 1.00 72.10 O
ATOM 6 C5' A B2035 9.340 -58.771 101.620 1.00 72.45 C
ATOM 7 C4' A B2035 9.015 -59.154 103.059 1.00 72.87 C
ATOM 8 O4' A B2035 10.212 -59.316 103.867 1.00 72.95 O
ATOM 9 C3' A B2035 8.206 -58.160 103.856 1.00 72.83 C
ATOM 10 O3' A B2035 6.861 -58.100 103.468 1.00 72.89 O
ATOM 11 C2' A B2035 8.412 -58.654 105.274 1.00 73.24 C
ATOM 12 O2' A B2035 7.631 -59.810 105.520 1.00 73.71 O
ATOM 13 C1' A B2035 9.886 -59.056 105.226 1.00 73.19 C
ATOM 14 N9 A B2035 10.752 -57.973 105.724 1.00 72.90 N
ATOM 15 C8 A B2035 11.562 -57.133 104.994 1.00 72.43 C
ATOM 16 N7 A B2035 12.215 -56.255 105.726 1.00 72.28 N
ATOM 17 C5 A B2035 11.790 -56.524 107.023 1.00 72.68 C
ATOM 18 C6 A B2035 12.117 -55.960 108.258 1.00 72.78 C
ATOM 19 N6 A B2035 12.968 -54.967 108.377 1.00 72.46 N
ATOM 20 N1 A B2035 11.553 -56.427 109.373 1.00 73.22 N
ATOM 21 C2 A B2035 10.707 -57.421 109.220 1.00 73.53 C
ATOM 22 N3 A B2035 10.325 -58.063 108.121 1.00 73.50 N
ATOM 23 C4 A B2035 10.896 -57.564 107.032 1.00 73.05 C
ATOM 24 P A B2036 6.250 -56.696 103.002 1.00 68.46 P
ATOM 25 OP1 A B2036 5.460 -56.957 101.766 1.00 68.39 O
ATOM 26 OP2 A B2036 7.392 -55.715 102.925 1.00 68.04 O
ATOM 27 O5' A B2036 5.278 -56.332 104.231 1.00 68.72 O
TER
ATOM 2 P A A2036 6.250 -56.696 103.002 1.00 68.46 P
ATOM 3 OP1 A A2036 5.460 -56.957 101.766 1.00 68.39 O
ATOM 4 OP2 A A2036 7.392 -55.715 102.925 1.00 68.04 O
ATOM 5 O5' A A2036 5.278 -56.332 104.231 1.00 68.72 O
ATOM 6 C5' A A2036 4.530 -57.353 104.876 1.00 69.23 C
ATOM 7 C4' A A2036 4.579 -57.246 106.384 1.00 69.51 C
ATOM 8 O4' A A2036 5.927 -57.465 106.872 1.00 69.51 O
ATOM 9 C3' A A2036 4.195 -55.905 106.977 1.00 69.32 C
ATOM 10 O3' A A2036 2.810 -55.694 107.017 1.00 69.45 O
ATOM 11 C2' A A2036 4.834 -55.951 108.352 1.00 69.56 C
ATOM 12 O2' A A2036 4.044 -56.696 109.249 1.00 70.06 O
ATOM 13 C1' A A2036 6.118 -56.723 108.067 1.00 69.55 C
ATOM 14 N9 A A2036 7.258 -55.807 107.883 1.00 69.12 N
ATOM 15 C8 A A2036 7.889 -55.473 106.727 1.00 68.71 C
ATOM 16 N7 A A2036 8.876 -54.652 106.918 1.00 68.42 N
ATOM 17 C5 A A2036 8.886 -54.416 108.273 1.00 68.67 C
ATOM 18 C6 A A2036 9.696 -53.612 109.082 1.00 68.56 C
ATOM 19 N6 A A2036 10.702 -52.860 108.623 1.00 68.17 N
ATOM 20 N1 A A2036 9.431 -53.606 110.402 1.00 68.91 N
ATOM 21 C2 A A2036 8.425 -54.351 110.853 1.00 69.31 C
ATOM 22 N3 A A2036 7.608 -55.144 110.178 1.00 69.44 N
ATOM 23 C4 A A2036 7.890 -55.118 108.877 1.00 69.10 C
ATOM 24 P C A2037 2.230 -54.227 106.767 1.00 64.58 P
ATOM 25 OP1 C A2037 0.753 -54.348 106.663 1.00 64.79 O
ATOM 26 OP2 C A2037 2.979 -53.643 105.624 1.00 64.08 O
ATOM 27 O5' C A2037 2.611 -53.486 108.104 1.00 64.63 O
TER
ATOM 1 O3' C B2034 12.890 -57.956 100.409 1.00 66.85 O
ATOM 2 P A B2035 11.340 -58.090 100.036 1.00 71.76 P
ATOM 3 OP1 A B2035 11.173 -59.400 99.322 1.00 72.03 O
ATOM 4 OP2 A B2035 10.982 -56.835 99.321 1.00 71.31 O
ATOM 5 O5' A B2035 10.607 -58.133 101.473 1.00 72.10 O
ATOM 6 C5' A B2035 9.340 -58.771 101.620 1.00 72.45 C
ATOM 7 C4' A B2035 9.015 -59.154 103.059 1.00 72.87 C
ATOM 8 O4' A B2035 10.212 -59.316 103.867 1.00 72.95 O
ATOM 9 C3' A B2035 8.206 -58.160 103.856 1.00 72.83 C
ATOM 10 O3' A B2035 6.861 -58.100 103.468 1.00 72.89 O
ATOM 11 C2' A B2035 8.412 -58.654 105.274 1.00 73.24 C
ATOM 12 O2' A B2035 7.631 -59.810 105.520 1.00 73.71 O
ATOM 13 C1' A B2035 9.886 -59.056 105.226 1.00 73.19 C
ATOM 14 N9 A B2035 10.752 -57.973 105.724 1.00 72.90 N
ATOM 15 C8 A B2035 11.562 -57.133 104.994 1.00 72.43 C
ATOM 16 N7 A B2035 12.215 -56.255 105.726 1.00 72.28 N
ATOM 17 C5 A B2035 11.790 -56.524 107.023 1.00 72.68 C
ATOM 18 C6 A B2035 12.117 -55.960 108.258 1.00 72.78 C
ATOM 19 N6 A B2035 12.968 -54.967 108.377 1.00 72.46 N
ATOM 20 N1 A B2035 11.553 -56.427 109.373 1.00 73.22 N
ATOM 21 C2 A B2035 10.707 -57.421 109.220 1.00 73.53 C
ATOM 22 N3 A B2035 10.325 -58.063 108.121 1.00 73.50 N
ATOM 23 C4 A B2035 10.896 -57.564 107.032 1.00 73.05 C
ATOM 24 P A B2036 6.250 -56.696 103.002 1.00 68.46 P
ATOM 25 OP1 A B2036 5.460 -56.957 101.766 1.00 68.39 O
ATOM 26 OP2 A B2036 7.392 -55.715 102.925 1.00 68.04 O
ATOM 27 O5' A B2036 5.278 -56.332 104.231 1.00 68.72 O
TER
Atoms:
OP1: (5.460,-56.957,101.766)
OP2: (7.392,-55.715,102.925)
C3': (4.195,-55.905,106.977)
C1': (6.118,-56.723,108.067)
C5': (4.530,-57.353,104.876)
O4': (5.927,-57.465,106.872)
C8: (7.889,-55.473,106.727)
O2': (4.044,-56.696,109.249)
C6: (9.696,-53.612,109.082)
C5: (8.886,-54.416,108.273)
C4: (7.890,-55.118,108.877)
P: (6.250,-56.696,103.002)
C4': (4.579,-57.246,106.384)
C2': (4.834,-55.951,108.352)
C2: (8.425,-54.351,110.853)
N1: (9.431,-53.606,110.402)
N3: (7.608,-55.144,110.178)
N6: (10.702,-52.860,108.623)
N7: (8.876,-54.652,106.918)
N9: (7.258,-55.807,107.883)
O5': (5.278,-56.332,104.231)
O3': (2.810,-55.694,107.017)
OP2: (7.392,-55.715,102.925)
C3': (4.195,-55.905,106.977)
C1': (6.118,-56.723,108.067)
C5': (4.530,-57.353,104.876)
O4': (5.927,-57.465,106.872)
C8: (7.889,-55.473,106.727)
O2': (4.044,-56.696,109.249)
C6: (9.696,-53.612,109.082)
C5: (8.886,-54.416,108.273)
C4: (7.890,-55.118,108.877)
P: (6.250,-56.696,103.002)
C4': (4.579,-57.246,106.384)
C2': (4.834,-55.951,108.352)
C2: (8.425,-54.351,110.853)
N1: (9.431,-53.606,110.402)
N3: (7.608,-55.144,110.178)
N6: (10.702,-52.860,108.623)
N7: (8.876,-54.652,106.918)
N9: (7.258,-55.807,107.883)
O5': (5.278,-56.332,104.231)
O3': (2.810,-55.694,107.017)
OP1: (11.173,-59.400,99.322)
OP2: (10.982,-56.835,99.321)
C3': (8.206,-58.160,103.856)
C1': (9.886,-59.056,105.226)
C5': (9.340,-58.771,101.620)
O4': (10.212,-59.316,103.867)
C8: (11.562,-57.133,104.994)
O2': (7.631,-59.810,105.520)
C6: (12.117,-55.960,108.258)
C5: (11.790,-56.524,107.023)
C4: (10.896,-57.564,107.032)
P: (11.340,-58.090,100.036)
C4': (9.015,-59.154,103.059)
C2': (8.412,-58.654,105.274)
C2: (10.707,-57.421,109.220)
N1: (11.553,-56.427,109.373)
N3: (10.325,-58.063,108.121)
N6: (12.968,-54.967,108.377)
N7: (12.215,-56.255,105.726)
N9: (10.752,-57.973,105.724)
O5': (10.607,-58.133,101.473)
O3': (6.861,-58.100,103.468)
OP2: (10.982,-56.835,99.321)
C3': (8.206,-58.160,103.856)
C1': (9.886,-59.056,105.226)
C5': (9.340,-58.771,101.620)
O4': (10.212,-59.316,103.867)
C8: (11.562,-57.133,104.994)
O2': (7.631,-59.810,105.520)
C6: (12.117,-55.960,108.258)
C5: (11.790,-56.524,107.023)
C4: (10.896,-57.564,107.032)
P: (11.340,-58.090,100.036)
C4': (9.015,-59.154,103.059)
C2': (8.412,-58.654,105.274)
C2: (10.707,-57.421,109.220)
N1: (11.553,-56.427,109.373)
N3: (10.325,-58.063,108.121)
N6: (12.968,-54.967,108.377)
N7: (12.215,-56.255,105.726)
N9: (10.752,-57.973,105.724)
O5': (10.607,-58.133,101.473)
O3': (6.861,-58.100,103.468)
Image (generated by PyMOL):