Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1Y27:X51:X50
Extra
PDB:
ATOM 1 O3' A A 50 4.558 -0.255 53.006 1.00 50.65 O
ATOM 2 P A A 51 3.355 -1.153 52.446 1.00 51.22 P
ATOM 3 OP1 A A 51 2.088 -0.549 52.920 1.00 51.12 O
ATOM 4 OP2 A A 51 3.646 -2.572 52.756 1.00 51.06 O
ATOM 5 O5' A A 51 3.462 -0.942 50.863 1.00 51.20 O
ATOM 6 C5' A A 51 3.161 0.319 50.268 1.00 52.13 C
ATOM 7 C4' A A 51 3.701 0.393 48.848 1.00 52.84 C
ATOM 8 O4' A A 51 5.128 0.111 48.845 1.00 53.27 O
ATOM 9 C3' A A 51 3.078 -0.576 47.843 1.00 53.01 C
ATOM 10 O3' A A 51 2.890 0.106 46.603 1.00 53.37 O
ATOM 11 C2' A A 51 4.150 -1.662 47.750 1.00 53.22 C
ATOM 12 O2' A A 51 4.102 -2.431 46.567 1.00 52.86 O
ATOM 13 C1' A A 51 5.394 -0.781 47.783 1.00 53.51 C
ATOM 14 N9 A A 51 6.679 -1.466 47.977 1.00 53.78 N
ATOM 15 C8 A A 51 6.896 -2.752 48.397 1.00 53.71 C
ATOM 16 N7 A A 51 8.162 -3.090 48.464 1.00 53.60 N
ATOM 17 C5 A A 51 8.830 -1.948 48.058 1.00 53.69 C
ATOM 18 C6 A A 51 10.203 -1.646 47.908 1.00 53.68 C
ATOM 19 N6 A A 51 11.180 -2.520 48.163 1.00 53.63 N
ATOM 20 N1 A A 51 10.537 -0.406 47.479 1.00 53.75 N
ATOM 21 C2 A A 51 9.560 0.477 47.218 1.00 53.75 C
ATOM 22 N3 A A 51 8.239 0.307 47.323 1.00 53.98 N
ATOM 23 C4 A A 51 7.933 -0.936 47.752 1.00 53.92 C
ATOM 24 P A A 52 1.661 -0.190 45.614 1.00 53.49 P
ATOM 25 OP1 A A 52 0.699 0.922 45.778 1.00 53.22 O
ATOM 26 OP2 A A 52 1.205 -1.587 45.803 1.00 53.75 O
ATOM 27 O5' A A 52 2.328 -0.061 44.162 1.00 53.34 O
TER
ATOM 1 O3' U B 49 9.774 -2.046 57.447 1.00 51.03 O
ATOM 2 P A B 50 8.385 -2.490 56.769 1.00 51.13 P
ATOM 3 OP1 A B 50 7.454 -2.798 57.877 1.00 51.09 O
ATOM 4 OP2 A B 50 8.649 -3.521 55.738 1.00 50.90 O
ATOM 5 O5' A B 50 7.864 -1.147 56.073 1.00 50.96 O
ATOM 6 C5' A B 50 6.630 -1.143 55.366 1.00 50.47 C
ATOM 7 C4' A B 50 6.664 -0.208 54.169 1.00 50.06 C
ATOM 8 O4' A B 50 8.027 0.005 53.717 1.00 49.55 O
ATOM 9 C3' A B 50 5.899 -0.729 52.961 1.00 50.02 C
ATOM 10 O3' A B 50 4.558 -0.255 53.006 1.00 50.65 O
ATOM 11 C2' A B 50 6.680 -0.174 51.770 1.00 49.64 C
ATOM 12 O2' A B 50 6.242 1.115 51.382 1.00 49.37 O
ATOM 13 C1' A B 50 8.110 -0.103 52.307 1.00 49.02 C
ATOM 14 N9 A B 50 8.979 -1.246 52.004 1.00 48.58 N
ATOM 15 C8 A B 50 8.667 -2.579 52.041 1.00 48.45 C
ATOM 16 N7 A B 50 9.664 -3.373 51.733 1.00 48.36 N
ATOM 17 C5 A B 50 10.711 -2.504 51.481 1.00 48.41 C
ATOM 18 C6 A B 50 12.058 -2.711 51.105 1.00 48.62 C
ATOM 19 N6 A B 50 12.590 -3.922 50.904 1.00 48.56 N
ATOM 20 N1 A B 50 12.841 -1.622 50.933 1.00 48.63 N
ATOM 21 C2 A B 50 12.311 -0.406 51.132 1.00 48.54 C
ATOM 22 N3 A B 50 11.064 -0.088 51.485 1.00 48.44 N
ATOM 23 C4 A B 50 10.306 -1.189 51.647 1.00 48.35 C
ATOM 24 P A B 51 3.355 -1.153 52.446 1.00 51.22 P
ATOM 25 OP1 A B 51 2.088 -0.549 52.920 1.00 51.12 O
ATOM 26 OP2 A B 51 3.646 -2.572 52.756 1.00 51.06 O
ATOM 27 O5' A B 51 3.462 -0.942 50.863 1.00 51.20 O
TER
ATOM 2 P A A 51 3.355 -1.153 52.446 1.00 51.22 P
ATOM 3 OP1 A A 51 2.088 -0.549 52.920 1.00 51.12 O
ATOM 4 OP2 A A 51 3.646 -2.572 52.756 1.00 51.06 O
ATOM 5 O5' A A 51 3.462 -0.942 50.863 1.00 51.20 O
ATOM 6 C5' A A 51 3.161 0.319 50.268 1.00 52.13 C
ATOM 7 C4' A A 51 3.701 0.393 48.848 1.00 52.84 C
ATOM 8 O4' A A 51 5.128 0.111 48.845 1.00 53.27 O
ATOM 9 C3' A A 51 3.078 -0.576 47.843 1.00 53.01 C
ATOM 10 O3' A A 51 2.890 0.106 46.603 1.00 53.37 O
ATOM 11 C2' A A 51 4.150 -1.662 47.750 1.00 53.22 C
ATOM 12 O2' A A 51 4.102 -2.431 46.567 1.00 52.86 O
ATOM 13 C1' A A 51 5.394 -0.781 47.783 1.00 53.51 C
ATOM 14 N9 A A 51 6.679 -1.466 47.977 1.00 53.78 N
ATOM 15 C8 A A 51 6.896 -2.752 48.397 1.00 53.71 C
ATOM 16 N7 A A 51 8.162 -3.090 48.464 1.00 53.60 N
ATOM 17 C5 A A 51 8.830 -1.948 48.058 1.00 53.69 C
ATOM 18 C6 A A 51 10.203 -1.646 47.908 1.00 53.68 C
ATOM 19 N6 A A 51 11.180 -2.520 48.163 1.00 53.63 N
ATOM 20 N1 A A 51 10.537 -0.406 47.479 1.00 53.75 N
ATOM 21 C2 A A 51 9.560 0.477 47.218 1.00 53.75 C
ATOM 22 N3 A A 51 8.239 0.307 47.323 1.00 53.98 N
ATOM 23 C4 A A 51 7.933 -0.936 47.752 1.00 53.92 C
ATOM 24 P A A 52 1.661 -0.190 45.614 1.00 53.49 P
ATOM 25 OP1 A A 52 0.699 0.922 45.778 1.00 53.22 O
ATOM 26 OP2 A A 52 1.205 -1.587 45.803 1.00 53.75 O
ATOM 27 O5' A A 52 2.328 -0.061 44.162 1.00 53.34 O
TER
ATOM 1 O3' U B 49 9.774 -2.046 57.447 1.00 51.03 O
ATOM 2 P A B 50 8.385 -2.490 56.769 1.00 51.13 P
ATOM 3 OP1 A B 50 7.454 -2.798 57.877 1.00 51.09 O
ATOM 4 OP2 A B 50 8.649 -3.521 55.738 1.00 50.90 O
ATOM 5 O5' A B 50 7.864 -1.147 56.073 1.00 50.96 O
ATOM 6 C5' A B 50 6.630 -1.143 55.366 1.00 50.47 C
ATOM 7 C4' A B 50 6.664 -0.208 54.169 1.00 50.06 C
ATOM 8 O4' A B 50 8.027 0.005 53.717 1.00 49.55 O
ATOM 9 C3' A B 50 5.899 -0.729 52.961 1.00 50.02 C
ATOM 10 O3' A B 50 4.558 -0.255 53.006 1.00 50.65 O
ATOM 11 C2' A B 50 6.680 -0.174 51.770 1.00 49.64 C
ATOM 12 O2' A B 50 6.242 1.115 51.382 1.00 49.37 O
ATOM 13 C1' A B 50 8.110 -0.103 52.307 1.00 49.02 C
ATOM 14 N9 A B 50 8.979 -1.246 52.004 1.00 48.58 N
ATOM 15 C8 A B 50 8.667 -2.579 52.041 1.00 48.45 C
ATOM 16 N7 A B 50 9.664 -3.373 51.733 1.00 48.36 N
ATOM 17 C5 A B 50 10.711 -2.504 51.481 1.00 48.41 C
ATOM 18 C6 A B 50 12.058 -2.711 51.105 1.00 48.62 C
ATOM 19 N6 A B 50 12.590 -3.922 50.904 1.00 48.56 N
ATOM 20 N1 A B 50 12.841 -1.622 50.933 1.00 48.63 N
ATOM 21 C2 A B 50 12.311 -0.406 51.132 1.00 48.54 C
ATOM 22 N3 A B 50 11.064 -0.088 51.485 1.00 48.44 N
ATOM 23 C4 A B 50 10.306 -1.189 51.647 1.00 48.35 C
ATOM 24 P A B 51 3.355 -1.153 52.446 1.00 51.22 P
ATOM 25 OP1 A B 51 2.088 -0.549 52.920 1.00 51.12 O
ATOM 26 OP2 A B 51 3.646 -2.572 52.756 1.00 51.06 O
ATOM 27 O5' A B 51 3.462 -0.942 50.863 1.00 51.20 O
TER
Atoms:
OP1: (2.088,-0.549,52.920)
OP2: (3.646,-2.572,52.756)
C3': (3.078,-0.576,47.843)
C1': (5.394,-0.781,47.783)
C5': (3.161,0.319,50.268)
O4': (5.128,0.111,48.845)
C8: (6.896,-2.752,48.397)
O2': (4.102,-2.431,46.567)
C6: (10.203,-1.646,47.908)
C5: (8.830,-1.948,48.058)
C4: (7.933,-0.936,47.752)
P: (3.355,-1.153,52.446)
C4': (3.701,0.393,48.848)
C2': (4.150,-1.662,47.750)
C2: (9.560,0.477,47.218)
N1: (10.537,-0.406,47.479)
N3: (8.239,0.307,47.323)
N6: (11.180,-2.520,48.163)
N7: (8.162,-3.090,48.464)
N9: (6.679,-1.466,47.977)
O5': (3.462,-0.942,50.863)
O3': (2.890,0.106,46.603)
OP2: (3.646,-2.572,52.756)
C3': (3.078,-0.576,47.843)
C1': (5.394,-0.781,47.783)
C5': (3.161,0.319,50.268)
O4': (5.128,0.111,48.845)
C8: (6.896,-2.752,48.397)
O2': (4.102,-2.431,46.567)
C6: (10.203,-1.646,47.908)
C5: (8.830,-1.948,48.058)
C4: (7.933,-0.936,47.752)
P: (3.355,-1.153,52.446)
C4': (3.701,0.393,48.848)
C2': (4.150,-1.662,47.750)
C2: (9.560,0.477,47.218)
N1: (10.537,-0.406,47.479)
N3: (8.239,0.307,47.323)
N6: (11.180,-2.520,48.163)
N7: (8.162,-3.090,48.464)
N9: (6.679,-1.466,47.977)
O5': (3.462,-0.942,50.863)
O3': (2.890,0.106,46.603)
OP1: (7.454,-2.798,57.877)
OP2: (8.649,-3.521,55.738)
C3': (5.899,-0.729,52.961)
C1': (8.110,-0.103,52.307)
C5': (6.630,-1.143,55.366)
O4': (8.027,0.005,53.717)
C8: (8.667,-2.579,52.041)
O2': (6.242,1.115,51.382)
C6: (12.058,-2.711,51.105)
C5: (10.711,-2.504,51.481)
C4: (10.306,-1.189,51.647)
P: (8.385,-2.490,56.769)
C4': (6.664,-0.208,54.169)
C2': (6.680,-0.174,51.770)
C2: (12.311,-0.406,51.132)
N1: (12.841,-1.622,50.933)
N3: (11.064,-0.088,51.485)
N6: (12.590,-3.922,50.904)
N7: (9.664,-3.373,51.733)
N9: (8.979,-1.246,52.004)
O5': (7.864,-1.147,56.073)
O3': (4.558,-0.255,53.006)
OP2: (8.649,-3.521,55.738)
C3': (5.899,-0.729,52.961)
C1': (8.110,-0.103,52.307)
C5': (6.630,-1.143,55.366)
O4': (8.027,0.005,53.717)
C8: (8.667,-2.579,52.041)
O2': (6.242,1.115,51.382)
C6: (12.058,-2.711,51.105)
C5: (10.711,-2.504,51.481)
C4: (10.306,-1.189,51.647)
P: (8.385,-2.490,56.769)
C4': (6.664,-0.208,54.169)
C2': (6.680,-0.174,51.770)
C2: (12.311,-0.406,51.132)
N1: (12.841,-1.622,50.933)
N3: (11.064,-0.088,51.485)
N6: (12.590,-3.922,50.904)
N7: (9.664,-3.373,51.733)
N9: (8.979,-1.246,52.004)
O5': (7.864,-1.147,56.073)
O3': (4.558,-0.255,53.006)
Image (generated by PyMOL):