Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:X79:X78
Extra
PDB:
ATOM 1 O3' A A 78 24.914 6.960 4.021 1.00 27.72 O
ATOM 2 P A A 79 25.110 8.526 3.783 1.00 26.90 P
ATOM 3 OP1 A A 79 26.269 8.554 2.863 1.00 31.62 O
ATOM 4 OP2 A A 79 25.174 9.245 5.071 1.00 27.18 O
ATOM 5 O5' A A 79 23.807 9.046 3.034 1.00 25.97 O
ATOM 6 C5' A A 79 23.494 8.634 1.713 1.00 23.83 C
ATOM 7 C4' A A 79 22.298 9.385 1.188 1.00 23.07 C
ATOM 8 O4' A A 79 21.116 9.009 1.933 1.00 21.32 O
ATOM 9 C3' A A 79 22.346 10.897 1.337 1.00 23.54 C
ATOM 10 O3' A A 79 23.117 11.511 0.320 1.00 23.20 O
ATOM 11 C2' A A 79 20.868 11.285 1.330 1.00 22.22 C
ATOM 12 O2' A A 79 20.328 11.211 0.013 1.00 21.95 O
ATOM 13 C1' A A 79 20.265 10.120 2.105 1.00 20.24 C
ATOM 14 N9 A A 79 20.116 10.336 3.557 1.00 22.29 N
ATOM 15 C8 A A 79 20.984 9.917 4.531 1.00 21.90 C
ATOM 16 N7 A A 79 20.586 10.203 5.748 1.00 21.76 N
ATOM 17 C5 A A 79 19.374 10.833 5.573 1.00 19.77 C
ATOM 18 C6 A A 79 18.459 11.368 6.492 1.00 21.34 C
ATOM 19 N6 A A 79 18.659 11.345 7.814 1.00 19.87 N
ATOM 20 N1 A A 79 17.335 11.931 6.004 1.00 22.27 N
ATOM 21 C2 A A 79 17.158 11.946 4.668 1.00 22.99 C
ATOM 22 N3 A A 79 17.955 11.471 3.709 1.00 20.21 N
ATOM 23 C4 A A 79 19.059 10.913 4.226 1.00 21.42 C
ATOM 24 P U A 80 23.961 12.851 0.597 1.00 25.19 P
ATOM 25 OP1 U A 80 24.828 12.964 -0.612 1.00 23.54 O
ATOM 26 OP2 U A 80 24.563 12.741 1.945 1.00 23.27 O
ATOM 27 O5' U A 80 22.881 14.000 0.599 1.00 22.32 O
TER
ATOM 1 O3' A B 77 25.939 3.887 9.128 1.00 32.99 O
ATOM 2 P A B 78 26.040 5.434 8.771 1.00 36.42 P
ATOM 3 OP1 A B 78 27.460 5.560 8.376 1.00 34.73 O
ATOM 4 OP2 A B 78 25.456 6.268 9.853 1.00 32.90 O
ATOM 5 O5' A B 78 25.091 5.563 7.503 1.00 30.32 O
ATOM 6 C5' A B 78 25.306 4.761 6.357 1.00 28.78 C
ATOM 7 C4' A B 78 24.226 5.020 5.343 1.00 28.83 C
ATOM 8 O4' A B 78 22.944 4.591 5.861 1.00 29.65 O
ATOM 9 C3' A B 78 23.990 6.477 4.975 1.00 28.20 C
ATOM 10 O3' A B 78 24.914 6.960 4.021 1.00 27.72 O
ATOM 11 C2' A B 78 22.584 6.435 4.418 1.00 26.94 C
ATOM 12 O2' A B 78 22.626 5.838 3.134 1.00 29.04 O
ATOM 13 C1' A B 78 21.927 5.437 5.363 1.00 27.96 C
ATOM 14 N9 A B 78 21.242 6.092 6.490 1.00 26.70 N
ATOM 15 C8 A B 78 21.668 6.211 7.790 1.00 28.30 C
ATOM 16 N7 A B 78 20.815 6.836 8.566 1.00 25.41 N
ATOM 17 C5 A B 78 19.757 7.141 7.716 1.00 24.55 C
ATOM 18 C6 A B 78 18.540 7.808 7.929 1.00 22.36 C
ATOM 19 N6 A B 78 18.172 8.282 9.122 1.00 23.35 N
ATOM 20 N1 A B 78 17.705 7.961 6.873 1.00 25.88 N
ATOM 21 C2 A B 78 18.080 7.467 5.679 1.00 24.57 C
ATOM 22 N3 A B 78 19.201 6.816 5.362 1.00 26.46 N
ATOM 23 C4 A B 78 20.005 6.689 6.437 1.00 23.63 C
ATOM 24 P A B 79 25.110 8.526 3.783 1.00 26.90 P
ATOM 25 OP1 A B 79 26.269 8.554 2.863 1.00 31.62 O
ATOM 26 OP2 A B 79 25.174 9.245 5.071 1.00 27.18 O
ATOM 27 O5' A B 79 23.807 9.046 3.034 1.00 25.97 O
TER
ATOM 2 P A A 79 25.110 8.526 3.783 1.00 26.90 P
ATOM 3 OP1 A A 79 26.269 8.554 2.863 1.00 31.62 O
ATOM 4 OP2 A A 79 25.174 9.245 5.071 1.00 27.18 O
ATOM 5 O5' A A 79 23.807 9.046 3.034 1.00 25.97 O
ATOM 6 C5' A A 79 23.494 8.634 1.713 1.00 23.83 C
ATOM 7 C4' A A 79 22.298 9.385 1.188 1.00 23.07 C
ATOM 8 O4' A A 79 21.116 9.009 1.933 1.00 21.32 O
ATOM 9 C3' A A 79 22.346 10.897 1.337 1.00 23.54 C
ATOM 10 O3' A A 79 23.117 11.511 0.320 1.00 23.20 O
ATOM 11 C2' A A 79 20.868 11.285 1.330 1.00 22.22 C
ATOM 12 O2' A A 79 20.328 11.211 0.013 1.00 21.95 O
ATOM 13 C1' A A 79 20.265 10.120 2.105 1.00 20.24 C
ATOM 14 N9 A A 79 20.116 10.336 3.557 1.00 22.29 N
ATOM 15 C8 A A 79 20.984 9.917 4.531 1.00 21.90 C
ATOM 16 N7 A A 79 20.586 10.203 5.748 1.00 21.76 N
ATOM 17 C5 A A 79 19.374 10.833 5.573 1.00 19.77 C
ATOM 18 C6 A A 79 18.459 11.368 6.492 1.00 21.34 C
ATOM 19 N6 A A 79 18.659 11.345 7.814 1.00 19.87 N
ATOM 20 N1 A A 79 17.335 11.931 6.004 1.00 22.27 N
ATOM 21 C2 A A 79 17.158 11.946 4.668 1.00 22.99 C
ATOM 22 N3 A A 79 17.955 11.471 3.709 1.00 20.21 N
ATOM 23 C4 A A 79 19.059 10.913 4.226 1.00 21.42 C
ATOM 24 P U A 80 23.961 12.851 0.597 1.00 25.19 P
ATOM 25 OP1 U A 80 24.828 12.964 -0.612 1.00 23.54 O
ATOM 26 OP2 U A 80 24.563 12.741 1.945 1.00 23.27 O
ATOM 27 O5' U A 80 22.881 14.000 0.599 1.00 22.32 O
TER
ATOM 1 O3' A B 77 25.939 3.887 9.128 1.00 32.99 O
ATOM 2 P A B 78 26.040 5.434 8.771 1.00 36.42 P
ATOM 3 OP1 A B 78 27.460 5.560 8.376 1.00 34.73 O
ATOM 4 OP2 A B 78 25.456 6.268 9.853 1.00 32.90 O
ATOM 5 O5' A B 78 25.091 5.563 7.503 1.00 30.32 O
ATOM 6 C5' A B 78 25.306 4.761 6.357 1.00 28.78 C
ATOM 7 C4' A B 78 24.226 5.020 5.343 1.00 28.83 C
ATOM 8 O4' A B 78 22.944 4.591 5.861 1.00 29.65 O
ATOM 9 C3' A B 78 23.990 6.477 4.975 1.00 28.20 C
ATOM 10 O3' A B 78 24.914 6.960 4.021 1.00 27.72 O
ATOM 11 C2' A B 78 22.584 6.435 4.418 1.00 26.94 C
ATOM 12 O2' A B 78 22.626 5.838 3.134 1.00 29.04 O
ATOM 13 C1' A B 78 21.927 5.437 5.363 1.00 27.96 C
ATOM 14 N9 A B 78 21.242 6.092 6.490 1.00 26.70 N
ATOM 15 C8 A B 78 21.668 6.211 7.790 1.00 28.30 C
ATOM 16 N7 A B 78 20.815 6.836 8.566 1.00 25.41 N
ATOM 17 C5 A B 78 19.757 7.141 7.716 1.00 24.55 C
ATOM 18 C6 A B 78 18.540 7.808 7.929 1.00 22.36 C
ATOM 19 N6 A B 78 18.172 8.282 9.122 1.00 23.35 N
ATOM 20 N1 A B 78 17.705 7.961 6.873 1.00 25.88 N
ATOM 21 C2 A B 78 18.080 7.467 5.679 1.00 24.57 C
ATOM 22 N3 A B 78 19.201 6.816 5.362 1.00 26.46 N
ATOM 23 C4 A B 78 20.005 6.689 6.437 1.00 23.63 C
ATOM 24 P A B 79 25.110 8.526 3.783 1.00 26.90 P
ATOM 25 OP1 A B 79 26.269 8.554 2.863 1.00 31.62 O
ATOM 26 OP2 A B 79 25.174 9.245 5.071 1.00 27.18 O
ATOM 27 O5' A B 79 23.807 9.046 3.034 1.00 25.97 O
TER
Atoms:
OP1: (26.269,8.554,2.863)
OP2: (25.174,9.245,5.071)
C3': (22.346,10.897,1.337)
C1': (20.265,10.120,2.105)
C5': (23.494,8.634,1.713)
O4': (21.116,9.009,1.933)
C8: (20.984,9.917,4.531)
O2': (20.328,11.211,0.013)
C6: (18.459,11.368,6.492)
C5: (19.374,10.833,5.573)
C4: (19.059,10.913,4.226)
P: (25.110,8.526,3.783)
C4': (22.298,9.385,1.188)
C2': (20.868,11.285,1.330)
C2: (17.158,11.946,4.668)
N1: (17.335,11.931,6.004)
N3: (17.955,11.471,3.709)
N6: (18.659,11.345,7.814)
N7: (20.586,10.203,5.748)
N9: (20.116,10.336,3.557)
O5': (23.807,9.046,3.034)
O3': (23.117,11.511,0.320)
OP2: (25.174,9.245,5.071)
C3': (22.346,10.897,1.337)
C1': (20.265,10.120,2.105)
C5': (23.494,8.634,1.713)
O4': (21.116,9.009,1.933)
C8: (20.984,9.917,4.531)
O2': (20.328,11.211,0.013)
C6: (18.459,11.368,6.492)
C5: (19.374,10.833,5.573)
C4: (19.059,10.913,4.226)
P: (25.110,8.526,3.783)
C4': (22.298,9.385,1.188)
C2': (20.868,11.285,1.330)
C2: (17.158,11.946,4.668)
N1: (17.335,11.931,6.004)
N3: (17.955,11.471,3.709)
N6: (18.659,11.345,7.814)
N7: (20.586,10.203,5.748)
N9: (20.116,10.336,3.557)
O5': (23.807,9.046,3.034)
O3': (23.117,11.511,0.320)
OP1: (27.460,5.560,8.376)
OP2: (25.456,6.268,9.853)
C3': (23.990,6.477,4.975)
C1': (21.927,5.437,5.363)
C5': (25.306,4.761,6.357)
O4': (22.944,4.591,5.861)
C8: (21.668,6.211,7.790)
O2': (22.626,5.838,3.134)
C6: (18.540,7.808,7.929)
C5: (19.757,7.141,7.716)
C4: (20.005,6.689,6.437)
P: (26.040,5.434,8.771)
C4': (24.226,5.020,5.343)
C2': (22.584,6.435,4.418)
C2: (18.080,7.467,5.679)
N1: (17.705,7.961,6.873)
N3: (19.201,6.816,5.362)
N6: (18.172,8.282,9.122)
N7: (20.815,6.836,8.566)
N9: (21.242,6.092,6.490)
O5': (25.091,5.563,7.503)
O3': (24.914,6.960,4.021)
OP2: (25.456,6.268,9.853)
C3': (23.990,6.477,4.975)
C1': (21.927,5.437,5.363)
C5': (25.306,4.761,6.357)
O4': (22.944,4.591,5.861)
C8: (21.668,6.211,7.790)
O2': (22.626,5.838,3.134)
C6: (18.540,7.808,7.929)
C5: (19.757,7.141,7.716)
C4: (20.005,6.689,6.437)
P: (26.040,5.434,8.771)
C4': (24.226,5.020,5.343)
C2': (22.584,6.435,4.418)
C2: (18.080,7.467,5.679)
N1: (17.705,7.961,6.873)
N3: (19.201,6.816,5.362)
N6: (18.172,8.282,9.122)
N7: (20.815,6.836,8.566)
N9: (21.242,6.092,6.490)
O5': (25.091,5.563,7.503)
O3': (24.914,6.960,4.021)
Image (generated by PyMOL):