Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1957:1956
Extra
PDB:
ATOM 1 O3' G A 956 -5.019 -48.553 4.241 1.00 91.82 O
ATOM 2 P G A 957 -6.520 -49.019 4.600 1.00104.18 P
ATOM 3 OP1 G A 957 -7.228 -49.220 3.312 1.00104.22 O
ATOM 4 OP2 G A 957 -7.086 -48.050 5.574 1.00104.36 O
ATOM 5 O5' G A 957 -6.279 -50.411 5.315 1.00104.35 O
ATOM 6 C5' G A 957 -6.702 -50.610 6.641 1.00104.65 C
ATOM 7 C4' G A 957 -5.803 -51.567 7.361 1.00104.60 C
ATOM 8 O4' G A 957 -4.694 -50.841 7.954 1.00104.31 O
ATOM 9 C3' G A 957 -6.454 -52.310 8.513 1.00105.00 C
ATOM 10 O3' G A 957 -7.075 -53.505 8.082 1.00105.23 O
ATOM 11 C2' G A 957 -5.309 -52.536 9.495 1.00104.85 C
ATOM 12 O2' G A 957 -4.548 -53.677 9.130 1.00104.71 O
ATOM 13 C1' G A 957 -4.465 -51.283 9.273 1.00104.47 C
ATOM 14 N9 G A 957 -4.858 -50.193 10.178 1.00104.58 N
ATOM 15 C8 G A 957 -5.381 -48.987 9.776 1.00104.55 C
ATOM 16 N7 G A 957 -5.651 -48.189 10.765 1.00104.68 N
ATOM 17 C5 G A 957 -5.274 -48.916 11.880 1.00104.80 C
ATOM 18 C6 G A 957 -5.332 -48.559 13.237 1.00104.96 C
ATOM 19 O6 G A 957 -5.739 -47.506 13.738 1.00105.03 O
ATOM 20 N1 G A 957 -4.855 -49.585 14.034 1.00105.04 N
ATOM 21 C2 G A 957 -4.386 -50.794 13.588 1.00104.97 C
ATOM 22 N2 G A 957 -3.981 -51.645 14.535 1.00105.08 N
ATOM 23 N3 G A 957 -4.321 -51.148 12.319 1.00104.82 N
ATOM 24 C4 G A 957 -4.781 -50.157 11.537 1.00104.74 C
ATOM 25 P U A 958 -8.663 -53.706 8.224 1.00128.33 P
ATOM 26 OP1 U A 958 -9.102 -54.503 7.048 1.00128.37 O
ATOM 27 OP2 U A 958 -9.270 -52.369 8.448 1.00128.39 O
ATOM 28 O5' U A 958 -8.758 -54.574 9.555 1.00128.62 O
TER
ATOM 1 O3' A B 955 -3.664 -42.815 4.260 1.00 89.08 O
ATOM 2 P G B 956 -5.137 -43.348 4.623 1.00 91.40 P
ATOM 3 OP1 G B 956 -5.997 -42.998 3.499 1.00 91.45 O
ATOM 4 OP2 G B 956 -5.502 -42.842 5.961 1.00 91.62 O
ATOM 5 O5' G B 956 -4.911 -44.913 4.678 1.00 91.49 O
ATOM 6 C5' G B 956 -3.997 -45.531 3.789 1.00 91.19 C
ATOM 7 C4' G B 956 -3.362 -46.755 4.398 1.00 91.22 C
ATOM 8 O4' G B 956 -2.412 -46.365 5.417 1.00 91.06 O
ATOM 9 C3' G B 956 -4.292 -47.718 5.123 1.00 91.65 C
ATOM 10 O3' G B 956 -5.019 -48.553 4.241 1.00 91.82 O
ATOM 11 C2' G B 956 -3.329 -48.480 6.025 1.00 91.59 C
ATOM 12 O2' G B 956 -2.650 -49.489 5.291 1.00 91.41 O
ATOM 13 C1' G B 956 -2.318 -47.382 6.396 1.00 91.26 C
ATOM 14 N9 G B 956 -2.605 -46.792 7.720 1.00 91.46 N
ATOM 15 C8 G B 956 -3.158 -45.559 7.986 1.00 91.52 C
ATOM 16 N7 G B 956 -3.302 -45.337 9.264 1.00 91.70 N
ATOM 17 C5 G B 956 -2.809 -46.488 9.860 1.00 91.76 C
ATOM 18 C6 G B 956 -2.705 -46.816 11.220 1.00 91.95 C
ATOM 19 O6 G B 956 -3.047 -46.123 12.176 1.00 92.10 O
ATOM 20 N1 G B 956 -2.154 -48.073 11.399 1.00 91.95 N
ATOM 21 C2 G B 956 -1.746 -48.900 10.396 1.00 91.79 C
ATOM 22 N2 G B 956 -1.230 -50.067 10.774 1.00 91.82 N
ATOM 23 N3 G B 956 -1.835 -48.618 9.114 1.00 91.61 N
ATOM 24 C4 G B 956 -2.377 -47.399 8.929 1.00 91.61 C
ATOM 25 P G B 957 -6.520 -49.019 4.600 1.00104.18 P
ATOM 26 OP1 G B 957 -7.228 -49.220 3.312 1.00104.22 O
ATOM 27 OP2 G B 957 -7.086 -48.050 5.574 1.00104.36 O
ATOM 28 O5' G B 957 -6.279 -50.411 5.315 1.00104.35 O
TER
ATOM 2 P G A 957 -6.520 -49.019 4.600 1.00104.18 P
ATOM 3 OP1 G A 957 -7.228 -49.220 3.312 1.00104.22 O
ATOM 4 OP2 G A 957 -7.086 -48.050 5.574 1.00104.36 O
ATOM 5 O5' G A 957 -6.279 -50.411 5.315 1.00104.35 O
ATOM 6 C5' G A 957 -6.702 -50.610 6.641 1.00104.65 C
ATOM 7 C4' G A 957 -5.803 -51.567 7.361 1.00104.60 C
ATOM 8 O4' G A 957 -4.694 -50.841 7.954 1.00104.31 O
ATOM 9 C3' G A 957 -6.454 -52.310 8.513 1.00105.00 C
ATOM 10 O3' G A 957 -7.075 -53.505 8.082 1.00105.23 O
ATOM 11 C2' G A 957 -5.309 -52.536 9.495 1.00104.85 C
ATOM 12 O2' G A 957 -4.548 -53.677 9.130 1.00104.71 O
ATOM 13 C1' G A 957 -4.465 -51.283 9.273 1.00104.47 C
ATOM 14 N9 G A 957 -4.858 -50.193 10.178 1.00104.58 N
ATOM 15 C8 G A 957 -5.381 -48.987 9.776 1.00104.55 C
ATOM 16 N7 G A 957 -5.651 -48.189 10.765 1.00104.68 N
ATOM 17 C5 G A 957 -5.274 -48.916 11.880 1.00104.80 C
ATOM 18 C6 G A 957 -5.332 -48.559 13.237 1.00104.96 C
ATOM 19 O6 G A 957 -5.739 -47.506 13.738 1.00105.03 O
ATOM 20 N1 G A 957 -4.855 -49.585 14.034 1.00105.04 N
ATOM 21 C2 G A 957 -4.386 -50.794 13.588 1.00104.97 C
ATOM 22 N2 G A 957 -3.981 -51.645 14.535 1.00105.08 N
ATOM 23 N3 G A 957 -4.321 -51.148 12.319 1.00104.82 N
ATOM 24 C4 G A 957 -4.781 -50.157 11.537 1.00104.74 C
ATOM 25 P U A 958 -8.663 -53.706 8.224 1.00128.33 P
ATOM 26 OP1 U A 958 -9.102 -54.503 7.048 1.00128.37 O
ATOM 27 OP2 U A 958 -9.270 -52.369 8.448 1.00128.39 O
ATOM 28 O5' U A 958 -8.758 -54.574 9.555 1.00128.62 O
TER
ATOM 1 O3' A B 955 -3.664 -42.815 4.260 1.00 89.08 O
ATOM 2 P G B 956 -5.137 -43.348 4.623 1.00 91.40 P
ATOM 3 OP1 G B 956 -5.997 -42.998 3.499 1.00 91.45 O
ATOM 4 OP2 G B 956 -5.502 -42.842 5.961 1.00 91.62 O
ATOM 5 O5' G B 956 -4.911 -44.913 4.678 1.00 91.49 O
ATOM 6 C5' G B 956 -3.997 -45.531 3.789 1.00 91.19 C
ATOM 7 C4' G B 956 -3.362 -46.755 4.398 1.00 91.22 C
ATOM 8 O4' G B 956 -2.412 -46.365 5.417 1.00 91.06 O
ATOM 9 C3' G B 956 -4.292 -47.718 5.123 1.00 91.65 C
ATOM 10 O3' G B 956 -5.019 -48.553 4.241 1.00 91.82 O
ATOM 11 C2' G B 956 -3.329 -48.480 6.025 1.00 91.59 C
ATOM 12 O2' G B 956 -2.650 -49.489 5.291 1.00 91.41 O
ATOM 13 C1' G B 956 -2.318 -47.382 6.396 1.00 91.26 C
ATOM 14 N9 G B 956 -2.605 -46.792 7.720 1.00 91.46 N
ATOM 15 C8 G B 956 -3.158 -45.559 7.986 1.00 91.52 C
ATOM 16 N7 G B 956 -3.302 -45.337 9.264 1.00 91.70 N
ATOM 17 C5 G B 956 -2.809 -46.488 9.860 1.00 91.76 C
ATOM 18 C6 G B 956 -2.705 -46.816 11.220 1.00 91.95 C
ATOM 19 O6 G B 956 -3.047 -46.123 12.176 1.00 92.10 O
ATOM 20 N1 G B 956 -2.154 -48.073 11.399 1.00 91.95 N
ATOM 21 C2 G B 956 -1.746 -48.900 10.396 1.00 91.79 C
ATOM 22 N2 G B 956 -1.230 -50.067 10.774 1.00 91.82 N
ATOM 23 N3 G B 956 -1.835 -48.618 9.114 1.00 91.61 N
ATOM 24 C4 G B 956 -2.377 -47.399 8.929 1.00 91.61 C
ATOM 25 P G B 957 -6.520 -49.019 4.600 1.00104.18 P
ATOM 26 OP1 G B 957 -7.228 -49.220 3.312 1.00104.22 O
ATOM 27 OP2 G B 957 -7.086 -48.050 5.574 1.00104.36 O
ATOM 28 O5' G B 957 -6.279 -50.411 5.315 1.00104.35 O
TER
Atoms:
OP1: (-7.228,-49.220,3.312)
OP2: (-7.086,-48.050,5.574)
C3': (-6.454,-52.310,8.513)
C1': (-4.465,-51.283,9.273)
C5': (-6.702,-50.610,6.641)
O6: (-5.739,-47.506,13.738)
O4': (-4.694,-50.841,7.954)
C8: (-5.381,-48.987,9.776)
C2: (-4.386,-50.794,13.588)
C6: (-5.332,-48.559,13.237)
C5: (-5.274,-48.916,11.880)
C4: (-4.781,-50.157,11.537)
P: (-6.520,-49.019,4.600)
C4': (-5.803,-51.567,7.361)
C2': (-5.309,-52.536,9.495)
O2': (-4.548,-53.677,9.130)
N1: (-4.855,-49.585,14.034)
N2: (-3.981,-51.645,14.535)
N3: (-4.321,-51.148,12.319)
N7: (-5.651,-48.189,10.765)
N9: (-4.858,-50.193,10.178)
O5': (-6.279,-50.411,5.315)
O3': (-7.075,-53.505,8.082)
OP2: (-7.086,-48.050,5.574)
C3': (-6.454,-52.310,8.513)
C1': (-4.465,-51.283,9.273)
C5': (-6.702,-50.610,6.641)
O6: (-5.739,-47.506,13.738)
O4': (-4.694,-50.841,7.954)
C8: (-5.381,-48.987,9.776)
C2: (-4.386,-50.794,13.588)
C6: (-5.332,-48.559,13.237)
C5: (-5.274,-48.916,11.880)
C4: (-4.781,-50.157,11.537)
P: (-6.520,-49.019,4.600)
C4': (-5.803,-51.567,7.361)
C2': (-5.309,-52.536,9.495)
O2': (-4.548,-53.677,9.130)
N1: (-4.855,-49.585,14.034)
N2: (-3.981,-51.645,14.535)
N3: (-4.321,-51.148,12.319)
N7: (-5.651,-48.189,10.765)
N9: (-4.858,-50.193,10.178)
O5': (-6.279,-50.411,5.315)
O3': (-7.075,-53.505,8.082)
OP1: (-5.997,-42.998,3.499)
OP2: (-5.502,-42.842,5.961)
C3': (-4.292,-47.718,5.123)
C1': (-2.318,-47.382,6.396)
C5': (-3.997,-45.531,3.789)
O6: (-3.047,-46.123,12.176)
O4': (-2.412,-46.365,5.417)
C8: (-3.158,-45.559,7.986)
C2: (-1.746,-48.900,10.396)
C6: (-2.705,-46.816,11.220)
C5: (-2.809,-46.488,9.860)
C4: (-2.377,-47.399,8.929)
P: (-5.137,-43.348,4.623)
C4': (-3.362,-46.755,4.398)
C2': (-3.329,-48.480,6.025)
O2': (-2.650,-49.489,5.291)
N1: (-2.154,-48.073,11.399)
N2: (-1.230,-50.067,10.774)
N3: (-1.835,-48.618,9.114)
N7: (-3.302,-45.337,9.264)
N9: (-2.605,-46.792,7.720)
O5': (-4.911,-44.913,4.678)
O3': (-5.019,-48.553,4.241)
OP2: (-5.502,-42.842,5.961)
C3': (-4.292,-47.718,5.123)
C1': (-2.318,-47.382,6.396)
C5': (-3.997,-45.531,3.789)
O6: (-3.047,-46.123,12.176)
O4': (-2.412,-46.365,5.417)
C8: (-3.158,-45.559,7.986)
C2: (-1.746,-48.900,10.396)
C6: (-2.705,-46.816,11.220)
C5: (-2.809,-46.488,9.860)
C4: (-2.377,-47.399,8.929)
P: (-5.137,-43.348,4.623)
C4': (-3.362,-46.755,4.398)
C2': (-3.329,-48.480,6.025)
O2': (-2.650,-49.489,5.291)
N1: (-2.154,-48.073,11.399)
N2: (-1.230,-50.067,10.774)
N3: (-1.835,-48.618,9.114)
N7: (-3.302,-45.337,9.264)
N9: (-2.605,-46.792,7.720)
O5': (-4.911,-44.913,4.678)
O3': (-5.019,-48.553,4.241)
Image (generated by PyMOL):