Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5B:21220:21219
Extra
PDB:
ATOM 1 O3' G A1219 -48.414 -56.045 1.009 1.00122.92 O
ATOM 2 P A A1220 -48.135 -56.173 2.586 1.00106.24 P
ATOM 3 OP1 A A1220 -47.190 -57.302 2.767 1.00106.21 O
ATOM 4 OP2 A A1220 -49.471 -56.239 3.259 1.00106.08 O
ATOM 5 O5' A A1220 -47.412 -54.796 2.940 1.00105.94 O
ATOM 6 C5' A A1220 -46.269 -54.361 2.232 1.00106.13 C
ATOM 7 C4' A A1220 -46.031 -52.899 2.459 1.00105.91 C
ATOM 8 O4' A A1220 -47.158 -52.140 1.943 1.00106.16 O
ATOM 9 C3' A A1220 -45.962 -52.464 3.911 1.00105.28 C
ATOM 10 O3' A A1220 -44.729 -52.744 4.530 1.00104.98 O
ATOM 11 C2' A A1220 -46.296 -50.986 3.822 1.00105.23 C
ATOM 12 O2' A A1220 -45.209 -50.254 3.290 1.00105.36 O
ATOM 13 C1' A A1220 -47.407 -51.022 2.781 1.00105.75 C
ATOM 14 N9 A A1220 -48.729 -51.191 3.419 1.00105.59 N
ATOM 15 C8 A A1220 -49.501 -52.323 3.539 1.00105.68 C
ATOM 16 N7 A A1220 -50.627 -52.134 4.200 1.00105.50 N
ATOM 17 C5 A A1220 -50.590 -50.785 4.559 1.00105.27 C
ATOM 18 C6 A A1220 -51.484 -49.945 5.274 1.00105.04 C
ATOM 19 N6 A A1220 -52.663 -50.324 5.803 1.00104.98 N
ATOM 20 N1 A A1220 -51.121 -48.656 5.436 1.00104.87 N
ATOM 21 C2 A A1220 -49.958 -48.250 4.922 1.00104.94 C
ATOM 22 N3 A A1220 -49.048 -48.928 4.235 1.00105.17 N
ATOM 23 C4 A A1220 -49.423 -50.207 4.088 1.00105.32 C
ATOM 24 P U A1221 -44.702 -53.590 5.897 1.00109.27 P
ATOM 25 OP1 U A1221 -43.274 -53.656 6.349 1.00109.06 O
ATOM 26 OP2 U A1221 -45.442 -54.870 5.639 1.00109.52 O
ATOM 27 O5' U A1221 -45.536 -52.669 6.894 1.00108.85 O
TER
ATOM 1 O3' A B1218 -54.568 -57.486 -0.332 1.00115.32 O
ATOM 2 P G B1219 -53.549 -57.496 0.907 1.00123.58 P
ATOM 3 OP1 G B1219 -53.041 -58.883 1.043 1.00123.57 O
ATOM 4 OP2 G B1219 -54.264 -56.877 2.053 1.00123.15 O
ATOM 5 O5' G B1219 -52.369 -56.533 0.423 1.00123.57 O
ATOM 6 C5' G B1219 -51.224 -57.040 -0.250 1.00123.77 C
ATOM 7 C4' G B1219 -50.262 -55.931 -0.605 1.00123.76 C
ATOM 8 O4' G B1219 -50.993 -54.814 -1.181 1.00124.02 O
ATOM 9 C3' G B1219 -49.516 -55.292 0.558 1.00123.14 C
ATOM 10 O3' G B1219 -48.414 -56.045 1.009 1.00122.92 O
ATOM 11 C2' G B1219 -49.138 -53.936 -0.007 1.00123.27 C
ATOM 12 O2' G B1219 -48.088 -54.058 -0.951 1.00123.62 O
ATOM 13 C1' G B1219 -50.415 -53.591 -0.752 1.00123.70 C
ATOM 14 N9 G B1219 -51.371 -52.909 0.135 1.00123.37 N
ATOM 15 C8 G B1219 -52.461 -53.442 0.777 1.00123.24 C
ATOM 16 N7 G B1219 -53.092 -52.571 1.521 1.00122.95 N
ATOM 17 C5 G B1219 -52.364 -51.397 1.367 1.00122.88 C
ATOM 18 C6 G B1219 -52.554 -50.102 1.920 1.00122.61 C
ATOM 19 O6 G B1219 -53.423 -49.699 2.688 1.00122.37 O
ATOM 20 N1 G B1219 -51.588 -49.206 1.504 1.00122.65 N
ATOM 21 C2 G B1219 -50.557 -49.511 0.661 1.00122.92 C
ATOM 22 N2 G B1219 -49.732 -48.494 0.397 1.00122.93 N
ATOM 23 N3 G B1219 -50.353 -50.707 0.128 1.00123.18 N
ATOM 24 C4 G B1219 -51.292 -51.596 0.523 1.00123.13 C
ATOM 25 P A B1220 -48.135 -56.173 2.586 1.00106.24 P
ATOM 26 OP1 A B1220 -47.190 -57.302 2.767 1.00106.21 O
ATOM 27 OP2 A B1220 -49.471 -56.239 3.259 1.00106.08 O
ATOM 28 O5' A B1220 -47.412 -54.796 2.940 1.00105.94 O
TER
ATOM 2 P A A1220 -48.135 -56.173 2.586 1.00106.24 P
ATOM 3 OP1 A A1220 -47.190 -57.302 2.767 1.00106.21 O
ATOM 4 OP2 A A1220 -49.471 -56.239 3.259 1.00106.08 O
ATOM 5 O5' A A1220 -47.412 -54.796 2.940 1.00105.94 O
ATOM 6 C5' A A1220 -46.269 -54.361 2.232 1.00106.13 C
ATOM 7 C4' A A1220 -46.031 -52.899 2.459 1.00105.91 C
ATOM 8 O4' A A1220 -47.158 -52.140 1.943 1.00106.16 O
ATOM 9 C3' A A1220 -45.962 -52.464 3.911 1.00105.28 C
ATOM 10 O3' A A1220 -44.729 -52.744 4.530 1.00104.98 O
ATOM 11 C2' A A1220 -46.296 -50.986 3.822 1.00105.23 C
ATOM 12 O2' A A1220 -45.209 -50.254 3.290 1.00105.36 O
ATOM 13 C1' A A1220 -47.407 -51.022 2.781 1.00105.75 C
ATOM 14 N9 A A1220 -48.729 -51.191 3.419 1.00105.59 N
ATOM 15 C8 A A1220 -49.501 -52.323 3.539 1.00105.68 C
ATOM 16 N7 A A1220 -50.627 -52.134 4.200 1.00105.50 N
ATOM 17 C5 A A1220 -50.590 -50.785 4.559 1.00105.27 C
ATOM 18 C6 A A1220 -51.484 -49.945 5.274 1.00105.04 C
ATOM 19 N6 A A1220 -52.663 -50.324 5.803 1.00104.98 N
ATOM 20 N1 A A1220 -51.121 -48.656 5.436 1.00104.87 N
ATOM 21 C2 A A1220 -49.958 -48.250 4.922 1.00104.94 C
ATOM 22 N3 A A1220 -49.048 -48.928 4.235 1.00105.17 N
ATOM 23 C4 A A1220 -49.423 -50.207 4.088 1.00105.32 C
ATOM 24 P U A1221 -44.702 -53.590 5.897 1.00109.27 P
ATOM 25 OP1 U A1221 -43.274 -53.656 6.349 1.00109.06 O
ATOM 26 OP2 U A1221 -45.442 -54.870 5.639 1.00109.52 O
ATOM 27 O5' U A1221 -45.536 -52.669 6.894 1.00108.85 O
TER
ATOM 1 O3' A B1218 -54.568 -57.486 -0.332 1.00115.32 O
ATOM 2 P G B1219 -53.549 -57.496 0.907 1.00123.58 P
ATOM 3 OP1 G B1219 -53.041 -58.883 1.043 1.00123.57 O
ATOM 4 OP2 G B1219 -54.264 -56.877 2.053 1.00123.15 O
ATOM 5 O5' G B1219 -52.369 -56.533 0.423 1.00123.57 O
ATOM 6 C5' G B1219 -51.224 -57.040 -0.250 1.00123.77 C
ATOM 7 C4' G B1219 -50.262 -55.931 -0.605 1.00123.76 C
ATOM 8 O4' G B1219 -50.993 -54.814 -1.181 1.00124.02 O
ATOM 9 C3' G B1219 -49.516 -55.292 0.558 1.00123.14 C
ATOM 10 O3' G B1219 -48.414 -56.045 1.009 1.00122.92 O
ATOM 11 C2' G B1219 -49.138 -53.936 -0.007 1.00123.27 C
ATOM 12 O2' G B1219 -48.088 -54.058 -0.951 1.00123.62 O
ATOM 13 C1' G B1219 -50.415 -53.591 -0.752 1.00123.70 C
ATOM 14 N9 G B1219 -51.371 -52.909 0.135 1.00123.37 N
ATOM 15 C8 G B1219 -52.461 -53.442 0.777 1.00123.24 C
ATOM 16 N7 G B1219 -53.092 -52.571 1.521 1.00122.95 N
ATOM 17 C5 G B1219 -52.364 -51.397 1.367 1.00122.88 C
ATOM 18 C6 G B1219 -52.554 -50.102 1.920 1.00122.61 C
ATOM 19 O6 G B1219 -53.423 -49.699 2.688 1.00122.37 O
ATOM 20 N1 G B1219 -51.588 -49.206 1.504 1.00122.65 N
ATOM 21 C2 G B1219 -50.557 -49.511 0.661 1.00122.92 C
ATOM 22 N2 G B1219 -49.732 -48.494 0.397 1.00122.93 N
ATOM 23 N3 G B1219 -50.353 -50.707 0.128 1.00123.18 N
ATOM 24 C4 G B1219 -51.292 -51.596 0.523 1.00123.13 C
ATOM 25 P A B1220 -48.135 -56.173 2.586 1.00106.24 P
ATOM 26 OP1 A B1220 -47.190 -57.302 2.767 1.00106.21 O
ATOM 27 OP2 A B1220 -49.471 -56.239 3.259 1.00106.08 O
ATOM 28 O5' A B1220 -47.412 -54.796 2.940 1.00105.94 O
TER
Atoms:
OP1: (-47.190,-57.302,2.767)
OP2: (-49.471,-56.239,3.259)
C3': (-45.962,-52.464,3.911)
C1': (-47.407,-51.022,2.781)
C5': (-46.269,-54.361,2.232)
O4': (-47.158,-52.140,1.943)
C8: (-49.501,-52.323,3.539)
O2': (-45.209,-50.254,3.290)
C6: (-51.484,-49.945,5.274)
C5: (-50.590,-50.785,4.559)
C4: (-49.423,-50.207,4.088)
P: (-48.135,-56.173,2.586)
C4': (-46.031,-52.899,2.459)
C2': (-46.296,-50.986,3.822)
C2: (-49.958,-48.250,4.922)
N1: (-51.121,-48.656,5.436)
N3: (-49.048,-48.928,4.235)
N6: (-52.663,-50.324,5.803)
N7: (-50.627,-52.134,4.200)
N9: (-48.729,-51.191,3.419)
O5': (-47.412,-54.796,2.940)
O3': (-44.729,-52.744,4.530)
OP2: (-49.471,-56.239,3.259)
C3': (-45.962,-52.464,3.911)
C1': (-47.407,-51.022,2.781)
C5': (-46.269,-54.361,2.232)
O4': (-47.158,-52.140,1.943)
C8: (-49.501,-52.323,3.539)
O2': (-45.209,-50.254,3.290)
C6: (-51.484,-49.945,5.274)
C5: (-50.590,-50.785,4.559)
C4: (-49.423,-50.207,4.088)
P: (-48.135,-56.173,2.586)
C4': (-46.031,-52.899,2.459)
C2': (-46.296,-50.986,3.822)
C2: (-49.958,-48.250,4.922)
N1: (-51.121,-48.656,5.436)
N3: (-49.048,-48.928,4.235)
N6: (-52.663,-50.324,5.803)
N7: (-50.627,-52.134,4.200)
N9: (-48.729,-51.191,3.419)
O5': (-47.412,-54.796,2.940)
O3': (-44.729,-52.744,4.530)
OP1: (-53.041,-58.883,1.043)
OP2: (-54.264,-56.877,2.053)
C3': (-49.516,-55.292,0.558)
C1': (-50.415,-53.591,-0.752)
C5': (-51.224,-57.040,-0.250)
O6: (-53.423,-49.699,2.688)
O4': (-50.993,-54.814,-1.181)
C8: (-52.461,-53.442,0.777)
C2: (-50.557,-49.511,0.661)
C6: (-52.554,-50.102,1.920)
C5: (-52.364,-51.397,1.367)
C4: (-51.292,-51.596,0.523)
P: (-53.549,-57.496,0.907)
C4': (-50.262,-55.931,-0.605)
C2': (-49.138,-53.936,-0.007)
O2': (-48.088,-54.058,-0.951)
N1: (-51.588,-49.206,1.504)
N2: (-49.732,-48.494,0.397)
N3: (-50.353,-50.707,0.128)
N7: (-53.092,-52.571,1.521)
N9: (-51.371,-52.909,0.135)
O5': (-52.369,-56.533,0.423)
O3': (-48.414,-56.045,1.009)
OP2: (-54.264,-56.877,2.053)
C3': (-49.516,-55.292,0.558)
C1': (-50.415,-53.591,-0.752)
C5': (-51.224,-57.040,-0.250)
O6: (-53.423,-49.699,2.688)
O4': (-50.993,-54.814,-1.181)
C8: (-52.461,-53.442,0.777)
C2: (-50.557,-49.511,0.661)
C6: (-52.554,-50.102,1.920)
C5: (-52.364,-51.397,1.367)
C4: (-51.292,-51.596,0.523)
P: (-53.549,-57.496,0.907)
C4': (-50.262,-55.931,-0.605)
C2': (-49.138,-53.936,-0.007)
O2': (-48.088,-54.058,-0.951)
N1: (-51.588,-49.206,1.504)
N2: (-49.732,-48.494,0.397)
N3: (-50.353,-50.707,0.128)
N7: (-53.092,-52.571,1.521)
N9: (-51.371,-52.909,0.135)
O5': (-52.369,-56.533,0.423)
O3': (-48.414,-56.045,1.009)
Image (generated by PyMOL):