Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A1272:A1271
Extra
PDB:
ATOM 1 O3' G A1271 6.303 128.064 54.475 1.00 43.84 O
ATOM 2 P A A1272 5.928 129.466 53.809 1.00 44.73 P
ATOM 3 OP1 A A1272 4.879 130.170 54.591 1.00 45.16 O
ATOM 4 OP2 A A1272 5.694 129.141 52.400 1.00 45.10 O
ATOM 5 O5' A A1272 7.273 130.299 53.943 1.00 44.58 O
ATOM 6 C5' A A1272 7.676 130.810 55.217 1.00 43.57 C
ATOM 7 C4' A A1272 8.756 131.833 55.045 1.00 41.98 C
ATOM 8 O4' A A1272 9.985 131.209 54.616 1.00 40.59 O
ATOM 9 C3' A A1272 8.488 132.865 53.981 1.00 41.69 C
ATOM 10 O3' A A1272 7.640 133.852 54.503 1.00 44.93 O
ATOM 11 C2' A A1272 9.885 133.395 53.713 1.00 40.99 C
ATOM 12 O2' A A1272 10.321 134.263 54.737 1.00 39.50 O
ATOM 13 C1' A A1272 10.703 132.111 53.799 1.00 39.85 C
ATOM 14 N9 A A1272 10.888 131.477 52.504 1.00 39.99 N
ATOM 15 C8 A A1272 10.231 130.373 52.012 1.00 40.74 C
ATOM 16 N7 A A1272 10.648 129.991 50.833 1.00 39.72 N
ATOM 17 C5 A A1272 11.636 130.911 50.524 1.00 39.93 C
ATOM 18 C6 A A1272 12.468 131.035 49.431 1.00 41.29 C
ATOM 19 N6 A A1272 12.437 130.191 48.400 1.00 40.50 N
ATOM 20 N1 A A1272 13.350 132.066 49.424 1.00 41.97 N
ATOM 21 C2 A A1272 13.367 132.908 50.466 1.00 40.51 C
ATOM 22 N3 A A1272 12.630 132.890 51.562 1.00 39.11 N
ATOM 23 C4 A A1272 11.779 131.848 51.533 1.00 39.49 C
ATOM 24 P U A1273 6.668 134.655 53.530 1.00 47.85 P
ATOM 25 OP1 U A1273 5.275 134.351 53.936 1.00 45.97 O
ATOM 26 OP2 U A1273 7.094 134.453 52.108 1.00 47.28 O
ATOM 27 O5' U A1273 6.978 136.153 53.936 1.00 46.59 O
TER
ATOM 1 O3' G B1270 6.006 122.989 51.000 1.00 46.70 O
ATOM 2 P G B1271 5.768 124.571 50.848 1.00 48.32 P
ATOM 3 OP1 G B1271 4.324 124.762 51.171 1.00 49.16 O
ATOM 4 OP2 G B1271 6.307 125.071 49.556 1.00 45.79 O
ATOM 5 O5' G B1271 6.660 125.227 51.997 1.00 47.61 O
ATOM 6 C5' G B1271 6.315 125.054 53.382 1.00 45.00 C
ATOM 7 C4' G B1271 7.252 125.840 54.258 1.00 43.55 C
ATOM 8 O4' G B1271 8.609 125.360 54.082 1.00 42.48 O
ATOM 9 C3' G B1271 7.373 127.314 53.939 1.00 42.07 C
ATOM 10 O3' G B1271 6.303 128.064 54.475 1.00 43.84 O
ATOM 11 C2' G B1271 8.680 127.666 54.624 1.00 41.59 C
ATOM 12 O2' G B1271 8.524 127.774 56.027 1.00 39.68 O
ATOM 13 C1' G B1271 9.517 126.429 54.302 1.00 41.19 C
ATOM 14 N9 G B1271 10.353 126.587 53.114 1.00 41.07 N
ATOM 15 C8 G B1271 10.259 125.891 51.934 1.00 40.71 C
ATOM 16 N7 G B1271 11.179 126.221 51.067 1.00 39.62 N
ATOM 17 C5 G B1271 11.909 127.219 51.702 1.00 40.54 C
ATOM 18 C6 G B1271 13.026 127.979 51.251 1.00 40.21 C
ATOM 19 O6 G B1271 13.584 127.947 50.154 1.00 41.36 O
ATOM 20 N1 G B1271 13.479 128.860 52.231 1.00 40.88 N
ATOM 21 C2 G B1271 12.919 129.010 53.484 1.00 41.35 C
ATOM 22 N2 G B1271 13.519 129.882 54.319 1.00 41.78 N
ATOM 23 N3 G B1271 11.853 128.340 53.897 1.00 41.84 N
ATOM 24 C4 G B1271 11.412 127.459 52.966 1.00 41.18 C
ATOM 25 P A B1272 5.928 129.466 53.809 1.00 44.73 P
ATOM 26 OP1 A B1272 4.879 130.170 54.591 1.00 45.16 O
ATOM 27 OP2 A B1272 5.694 129.141 52.400 1.00 45.10 O
ATOM 28 O5' A B1272 7.273 130.299 53.943 1.00 44.58 O
TER
ATOM 2 P A A1272 5.928 129.466 53.809 1.00 44.73 P
ATOM 3 OP1 A A1272 4.879 130.170 54.591 1.00 45.16 O
ATOM 4 OP2 A A1272 5.694 129.141 52.400 1.00 45.10 O
ATOM 5 O5' A A1272 7.273 130.299 53.943 1.00 44.58 O
ATOM 6 C5' A A1272 7.676 130.810 55.217 1.00 43.57 C
ATOM 7 C4' A A1272 8.756 131.833 55.045 1.00 41.98 C
ATOM 8 O4' A A1272 9.985 131.209 54.616 1.00 40.59 O
ATOM 9 C3' A A1272 8.488 132.865 53.981 1.00 41.69 C
ATOM 10 O3' A A1272 7.640 133.852 54.503 1.00 44.93 O
ATOM 11 C2' A A1272 9.885 133.395 53.713 1.00 40.99 C
ATOM 12 O2' A A1272 10.321 134.263 54.737 1.00 39.50 O
ATOM 13 C1' A A1272 10.703 132.111 53.799 1.00 39.85 C
ATOM 14 N9 A A1272 10.888 131.477 52.504 1.00 39.99 N
ATOM 15 C8 A A1272 10.231 130.373 52.012 1.00 40.74 C
ATOM 16 N7 A A1272 10.648 129.991 50.833 1.00 39.72 N
ATOM 17 C5 A A1272 11.636 130.911 50.524 1.00 39.93 C
ATOM 18 C6 A A1272 12.468 131.035 49.431 1.00 41.29 C
ATOM 19 N6 A A1272 12.437 130.191 48.400 1.00 40.50 N
ATOM 20 N1 A A1272 13.350 132.066 49.424 1.00 41.97 N
ATOM 21 C2 A A1272 13.367 132.908 50.466 1.00 40.51 C
ATOM 22 N3 A A1272 12.630 132.890 51.562 1.00 39.11 N
ATOM 23 C4 A A1272 11.779 131.848 51.533 1.00 39.49 C
ATOM 24 P U A1273 6.668 134.655 53.530 1.00 47.85 P
ATOM 25 OP1 U A1273 5.275 134.351 53.936 1.00 45.97 O
ATOM 26 OP2 U A1273 7.094 134.453 52.108 1.00 47.28 O
ATOM 27 O5' U A1273 6.978 136.153 53.936 1.00 46.59 O
TER
ATOM 1 O3' G B1270 6.006 122.989 51.000 1.00 46.70 O
ATOM 2 P G B1271 5.768 124.571 50.848 1.00 48.32 P
ATOM 3 OP1 G B1271 4.324 124.762 51.171 1.00 49.16 O
ATOM 4 OP2 G B1271 6.307 125.071 49.556 1.00 45.79 O
ATOM 5 O5' G B1271 6.660 125.227 51.997 1.00 47.61 O
ATOM 6 C5' G B1271 6.315 125.054 53.382 1.00 45.00 C
ATOM 7 C4' G B1271 7.252 125.840 54.258 1.00 43.55 C
ATOM 8 O4' G B1271 8.609 125.360 54.082 1.00 42.48 O
ATOM 9 C3' G B1271 7.373 127.314 53.939 1.00 42.07 C
ATOM 10 O3' G B1271 6.303 128.064 54.475 1.00 43.84 O
ATOM 11 C2' G B1271 8.680 127.666 54.624 1.00 41.59 C
ATOM 12 O2' G B1271 8.524 127.774 56.027 1.00 39.68 O
ATOM 13 C1' G B1271 9.517 126.429 54.302 1.00 41.19 C
ATOM 14 N9 G B1271 10.353 126.587 53.114 1.00 41.07 N
ATOM 15 C8 G B1271 10.259 125.891 51.934 1.00 40.71 C
ATOM 16 N7 G B1271 11.179 126.221 51.067 1.00 39.62 N
ATOM 17 C5 G B1271 11.909 127.219 51.702 1.00 40.54 C
ATOM 18 C6 G B1271 13.026 127.979 51.251 1.00 40.21 C
ATOM 19 O6 G B1271 13.584 127.947 50.154 1.00 41.36 O
ATOM 20 N1 G B1271 13.479 128.860 52.231 1.00 40.88 N
ATOM 21 C2 G B1271 12.919 129.010 53.484 1.00 41.35 C
ATOM 22 N2 G B1271 13.519 129.882 54.319 1.00 41.78 N
ATOM 23 N3 G B1271 11.853 128.340 53.897 1.00 41.84 N
ATOM 24 C4 G B1271 11.412 127.459 52.966 1.00 41.18 C
ATOM 25 P A B1272 5.928 129.466 53.809 1.00 44.73 P
ATOM 26 OP1 A B1272 4.879 130.170 54.591 1.00 45.16 O
ATOM 27 OP2 A B1272 5.694 129.141 52.400 1.00 45.10 O
ATOM 28 O5' A B1272 7.273 130.299 53.943 1.00 44.58 O
TER
Atoms:
OP1: (4.879,130.170,54.591)
OP2: (5.694,129.141,52.400)
C3': (8.488,132.865,53.981)
C1': (10.703,132.111,53.799)
C5': (7.676,130.810,55.217)
O4': (9.985,131.209,54.616)
C8: (10.231,130.373,52.012)
O2': (10.321,134.263,54.737)
C6: (12.468,131.035,49.431)
C5: (11.636,130.911,50.524)
C4: (11.779,131.848,51.533)
P: (5.928,129.466,53.809)
C4': (8.756,131.833,55.045)
C2': (9.885,133.395,53.713)
C2: (13.367,132.908,50.466)
N1: (13.350,132.066,49.424)
N3: (12.630,132.890,51.562)
N6: (12.437,130.191,48.400)
N7: (10.648,129.991,50.833)
N9: (10.888,131.477,52.504)
O5': (7.273,130.299,53.943)
O3': (7.640,133.852,54.503)
OP2: (5.694,129.141,52.400)
C3': (8.488,132.865,53.981)
C1': (10.703,132.111,53.799)
C5': (7.676,130.810,55.217)
O4': (9.985,131.209,54.616)
C8: (10.231,130.373,52.012)
O2': (10.321,134.263,54.737)
C6: (12.468,131.035,49.431)
C5: (11.636,130.911,50.524)
C4: (11.779,131.848,51.533)
P: (5.928,129.466,53.809)
C4': (8.756,131.833,55.045)
C2': (9.885,133.395,53.713)
C2: (13.367,132.908,50.466)
N1: (13.350,132.066,49.424)
N3: (12.630,132.890,51.562)
N6: (12.437,130.191,48.400)
N7: (10.648,129.991,50.833)
N9: (10.888,131.477,52.504)
O5': (7.273,130.299,53.943)
O3': (7.640,133.852,54.503)
OP1: (4.324,124.762,51.171)
OP2: (6.307,125.071,49.556)
C3': (7.373,127.314,53.939)
C1': (9.517,126.429,54.302)
C5': (6.315,125.054,53.382)
O6: (13.584,127.947,50.154)
O4': (8.609,125.360,54.082)
C8: (10.259,125.891,51.934)
C2: (12.919,129.010,53.484)
C6: (13.026,127.979,51.251)
C5: (11.909,127.219,51.702)
C4: (11.412,127.459,52.966)
P: (5.768,124.571,50.848)
C4': (7.252,125.840,54.258)
C2': (8.680,127.666,54.624)
O2': (8.524,127.774,56.027)
N1: (13.479,128.860,52.231)
N2: (13.519,129.882,54.319)
N3: (11.853,128.340,53.897)
N7: (11.179,126.221,51.067)
N9: (10.353,126.587,53.114)
O5': (6.660,125.227,51.997)
O3': (6.303,128.064,54.475)
OP2: (6.307,125.071,49.556)
C3': (7.373,127.314,53.939)
C1': (9.517,126.429,54.302)
C5': (6.315,125.054,53.382)
O6: (13.584,127.947,50.154)
O4': (8.609,125.360,54.082)
C8: (10.259,125.891,51.934)
C2: (12.919,129.010,53.484)
C6: (13.026,127.979,51.251)
C5: (11.909,127.219,51.702)
C4: (11.412,127.459,52.966)
P: (5.768,124.571,50.848)
C4': (7.252,125.840,54.258)
C2': (8.680,127.666,54.624)
O2': (8.524,127.774,56.027)
N1: (13.479,128.860,52.231)
N2: (13.519,129.882,54.319)
N3: (11.853,128.340,53.897)
N7: (11.179,126.221,51.067)
N9: (10.353,126.587,53.114)
O5': (6.660,125.227,51.997)
O3': (6.303,128.064,54.475)
Image (generated by PyMOL):