Doublet info:
Details
Nucleotide types:
UG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YXP:A10:A9
Extra
PDB:
ATOM 1 O3' G A 9 -10.694 -53.117 109.451 1.00 44.26 O
ATOM 2 P U A 10 -11.102 -54.532 108.819 1.00 46.33 P
ATOM 3 OP1 U A 10 -12.350 -55.013 109.459 1.00 45.91 O
ATOM 4 OP2 U A 10 -9.922 -55.413 108.792 1.00 48.32 O
ATOM 5 O5' U A 10 -11.484 -54.163 107.322 1.00 47.32 O
ATOM 6 C5' U A 10 -12.653 -53.383 107.040 1.00 48.48 C
ATOM 7 C4' U A 10 -12.660 -52.962 105.598 1.00 47.77 C
ATOM 8 O4' U A 10 -11.468 -52.181 105.317 1.00 47.94 O
ATOM 9 C3' U A 10 -12.570 -54.087 104.593 1.00 48.09 C
ATOM 10 O3' U A 10 -13.817 -54.709 104.398 1.00 47.59 O
ATOM 11 C2' U A 10 -12.085 -53.355 103.353 1.00 47.88 C
ATOM 12 O2' U A 10 -13.093 -52.595 102.715 1.00 50.56 O
ATOM 13 C1' U A 10 -11.075 -52.387 103.967 1.00 47.02 C
ATOM 14 N1 U A 10 -9.708 -52.929 103.948 1.00 44.71 N
ATOM 15 C2 U A 10 -9.022 -52.934 102.731 1.00 43.61 C
ATOM 16 O2 U A 10 -9.503 -52.531 101.691 1.00 41.81 O
ATOM 17 N3 U A 10 -7.749 -53.433 102.786 1.00 39.45 N
ATOM 18 C4 U A 10 -7.107 -53.919 103.893 1.00 40.16 C
ATOM 19 O4 U A 10 -5.936 -54.284 103.796 1.00 37.49 O
ATOM 20 C5 U A 10 -7.885 -53.892 105.103 1.00 39.07 C
ATOM 21 C6 U A 10 -9.125 -53.409 105.086 1.00 41.14 C
ATOM 22 P G A 11 -13.867 -56.265 104.021 1.00 49.20 P
ATOM 23 OP1 G A 11 -15.289 -56.712 104.136 1.00 53.04 O
ATOM 24 OP2 G A 11 -12.815 -56.954 104.802 1.00 52.97 O
ATOM 25 O5' G A 11 -13.445 -56.299 102.482 1.00 52.25 O
TER
ATOM 1 O3' A B 8 -6.720 -55.281 112.264 1.00 42.22 O
ATOM 2 P G B 9 -5.895 -54.310 111.291 1.00 44.98 P
ATOM 3 OP1 G B 9 -5.202 -55.147 110.283 1.00 45.03 O
ATOM 4 OP2 G B 9 -5.117 -53.358 112.142 1.00 43.81 O
ATOM 5 O5' G B 9 -7.018 -53.455 110.561 1.00 46.06 O
ATOM 6 C5' G B 9 -8.030 -52.766 111.320 1.00 45.54 C
ATOM 7 C4' G B 9 -8.834 -51.872 110.411 1.00 44.70 C
ATOM 8 O4' G B 9 -7.952 -50.842 109.892 1.00 44.85 O
ATOM 9 C3' G B 9 -9.422 -52.549 109.174 1.00 45.58 C
ATOM 10 O3' G B 9 -10.694 -53.117 109.451 1.00 44.26 O
ATOM 11 C2' G B 9 -9.533 -51.384 108.208 1.00 44.01 C
ATOM 12 O2' G B 9 -10.646 -50.576 108.496 1.00 45.59 O
ATOM 13 C1' G B 9 -8.265 -50.594 108.541 1.00 44.54 C
ATOM 14 N9 G B 9 -7.104 -50.986 107.749 1.00 44.25 N
ATOM 15 C8 G B 9 -5.909 -51.482 108.212 1.00 44.24 C
ATOM 16 N7 G B 9 -5.035 -51.672 107.265 1.00 43.99 N
ATOM 17 C5 G B 9 -5.696 -51.290 106.108 1.00 41.82 C
ATOM 18 C6 G B 9 -5.241 -51.237 104.758 1.00 41.07 C
ATOM 19 O6 G B 9 -4.134 -51.551 104.307 1.00 38.90 O
ATOM 20 N1 G B 9 -6.235 -50.756 103.905 1.00 38.11 N
ATOM 21 C2 G B 9 -7.512 -50.393 104.300 1.00 41.54 C
ATOM 22 N2 G B 9 -8.341 -49.934 103.348 1.00 38.83 N
ATOM 23 N3 G B 9 -7.945 -50.463 105.547 1.00 41.35 N
ATOM 24 C4 G B 9 -6.987 -50.895 106.391 1.00 42.74 C
ATOM 25 P U B 10 -11.102 -54.532 108.819 1.00 46.33 P
ATOM 26 OP1 U B 10 -12.350 -55.013 109.459 1.00 45.91 O
ATOM 27 OP2 U B 10 -9.922 -55.413 108.792 1.00 48.32 O
ATOM 28 O5' U B 10 -11.484 -54.163 107.322 1.00 47.32 O
TER
ATOM 2 P U A 10 -11.102 -54.532 108.819 1.00 46.33 P
ATOM 3 OP1 U A 10 -12.350 -55.013 109.459 1.00 45.91 O
ATOM 4 OP2 U A 10 -9.922 -55.413 108.792 1.00 48.32 O
ATOM 5 O5' U A 10 -11.484 -54.163 107.322 1.00 47.32 O
ATOM 6 C5' U A 10 -12.653 -53.383 107.040 1.00 48.48 C
ATOM 7 C4' U A 10 -12.660 -52.962 105.598 1.00 47.77 C
ATOM 8 O4' U A 10 -11.468 -52.181 105.317 1.00 47.94 O
ATOM 9 C3' U A 10 -12.570 -54.087 104.593 1.00 48.09 C
ATOM 10 O3' U A 10 -13.817 -54.709 104.398 1.00 47.59 O
ATOM 11 C2' U A 10 -12.085 -53.355 103.353 1.00 47.88 C
ATOM 12 O2' U A 10 -13.093 -52.595 102.715 1.00 50.56 O
ATOM 13 C1' U A 10 -11.075 -52.387 103.967 1.00 47.02 C
ATOM 14 N1 U A 10 -9.708 -52.929 103.948 1.00 44.71 N
ATOM 15 C2 U A 10 -9.022 -52.934 102.731 1.00 43.61 C
ATOM 16 O2 U A 10 -9.503 -52.531 101.691 1.00 41.81 O
ATOM 17 N3 U A 10 -7.749 -53.433 102.786 1.00 39.45 N
ATOM 18 C4 U A 10 -7.107 -53.919 103.893 1.00 40.16 C
ATOM 19 O4 U A 10 -5.936 -54.284 103.796 1.00 37.49 O
ATOM 20 C5 U A 10 -7.885 -53.892 105.103 1.00 39.07 C
ATOM 21 C6 U A 10 -9.125 -53.409 105.086 1.00 41.14 C
ATOM 22 P G A 11 -13.867 -56.265 104.021 1.00 49.20 P
ATOM 23 OP1 G A 11 -15.289 -56.712 104.136 1.00 53.04 O
ATOM 24 OP2 G A 11 -12.815 -56.954 104.802 1.00 52.97 O
ATOM 25 O5' G A 11 -13.445 -56.299 102.482 1.00 52.25 O
TER
ATOM 1 O3' A B 8 -6.720 -55.281 112.264 1.00 42.22 O
ATOM 2 P G B 9 -5.895 -54.310 111.291 1.00 44.98 P
ATOM 3 OP1 G B 9 -5.202 -55.147 110.283 1.00 45.03 O
ATOM 4 OP2 G B 9 -5.117 -53.358 112.142 1.00 43.81 O
ATOM 5 O5' G B 9 -7.018 -53.455 110.561 1.00 46.06 O
ATOM 6 C5' G B 9 -8.030 -52.766 111.320 1.00 45.54 C
ATOM 7 C4' G B 9 -8.834 -51.872 110.411 1.00 44.70 C
ATOM 8 O4' G B 9 -7.952 -50.842 109.892 1.00 44.85 O
ATOM 9 C3' G B 9 -9.422 -52.549 109.174 1.00 45.58 C
ATOM 10 O3' G B 9 -10.694 -53.117 109.451 1.00 44.26 O
ATOM 11 C2' G B 9 -9.533 -51.384 108.208 1.00 44.01 C
ATOM 12 O2' G B 9 -10.646 -50.576 108.496 1.00 45.59 O
ATOM 13 C1' G B 9 -8.265 -50.594 108.541 1.00 44.54 C
ATOM 14 N9 G B 9 -7.104 -50.986 107.749 1.00 44.25 N
ATOM 15 C8 G B 9 -5.909 -51.482 108.212 1.00 44.24 C
ATOM 16 N7 G B 9 -5.035 -51.672 107.265 1.00 43.99 N
ATOM 17 C5 G B 9 -5.696 -51.290 106.108 1.00 41.82 C
ATOM 18 C6 G B 9 -5.241 -51.237 104.758 1.00 41.07 C
ATOM 19 O6 G B 9 -4.134 -51.551 104.307 1.00 38.90 O
ATOM 20 N1 G B 9 -6.235 -50.756 103.905 1.00 38.11 N
ATOM 21 C2 G B 9 -7.512 -50.393 104.300 1.00 41.54 C
ATOM 22 N2 G B 9 -8.341 -49.934 103.348 1.00 38.83 N
ATOM 23 N3 G B 9 -7.945 -50.463 105.547 1.00 41.35 N
ATOM 24 C4 G B 9 -6.987 -50.895 106.391 1.00 42.74 C
ATOM 25 P U B 10 -11.102 -54.532 108.819 1.00 46.33 P
ATOM 26 OP1 U B 10 -12.350 -55.013 109.459 1.00 45.91 O
ATOM 27 OP2 U B 10 -9.922 -55.413 108.792 1.00 48.32 O
ATOM 28 O5' U B 10 -11.484 -54.163 107.322 1.00 47.32 O
TER
Atoms:
C4: (-7.107,-53.919,103.893)
N3: (-7.749,-53.433,102.786)
OP1: (-12.350,-55.013,109.459)
OP2: (-9.922,-55.413,108.792)
C2: (-9.022,-52.934,102.731)
C1': (-11.075,-52.387,103.967)
C3': (-12.570,-54.087,104.593)
O5': (-11.484,-54.163,107.322)
O4': (-11.468,-52.181,105.317)
C5': (-12.653,-53.383,107.040)
P: (-11.102,-54.532,108.819)
C4': (-12.660,-52.962,105.598)
C2': (-12.085,-53.355,103.353)
O2': (-13.093,-52.595,102.715)
N1: (-9.708,-52.929,103.948)
O4: (-5.936,-54.284,103.796)
O2: (-9.503,-52.531,101.691)
C6: (-9.125,-53.409,105.086)
C5: (-7.885,-53.892,105.103)
O3': (-13.817,-54.709,104.398)
N3: (-7.749,-53.433,102.786)
OP1: (-12.350,-55.013,109.459)
OP2: (-9.922,-55.413,108.792)
C2: (-9.022,-52.934,102.731)
C1': (-11.075,-52.387,103.967)
C3': (-12.570,-54.087,104.593)
O5': (-11.484,-54.163,107.322)
O4': (-11.468,-52.181,105.317)
C5': (-12.653,-53.383,107.040)
P: (-11.102,-54.532,108.819)
C4': (-12.660,-52.962,105.598)
C2': (-12.085,-53.355,103.353)
O2': (-13.093,-52.595,102.715)
N1: (-9.708,-52.929,103.948)
O4: (-5.936,-54.284,103.796)
O2: (-9.503,-52.531,101.691)
C6: (-9.125,-53.409,105.086)
C5: (-7.885,-53.892,105.103)
O3': (-13.817,-54.709,104.398)
OP1: (-5.202,-55.147,110.283)
OP2: (-5.117,-53.358,112.142)
C3': (-9.422,-52.549,109.174)
C1': (-8.265,-50.594,108.541)
C5': (-8.030,-52.766,111.320)
O6: (-4.134,-51.551,104.307)
O4': (-7.952,-50.842,109.892)
C8: (-5.909,-51.482,108.212)
C2: (-7.512,-50.393,104.300)
C6: (-5.241,-51.237,104.758)
C5: (-5.696,-51.290,106.108)
C4: (-6.987,-50.895,106.391)
P: (-5.895,-54.310,111.291)
C4': (-8.834,-51.872,110.411)
C2': (-9.533,-51.384,108.208)
O2': (-10.646,-50.576,108.496)
N1: (-6.235,-50.756,103.905)
N2: (-8.341,-49.934,103.348)
N3: (-7.945,-50.463,105.547)
N7: (-5.035,-51.672,107.265)
N9: (-7.104,-50.986,107.749)
O5': (-7.018,-53.455,110.561)
O3': (-10.694,-53.117,109.451)
OP2: (-5.117,-53.358,112.142)
C3': (-9.422,-52.549,109.174)
C1': (-8.265,-50.594,108.541)
C5': (-8.030,-52.766,111.320)
O6: (-4.134,-51.551,104.307)
O4': (-7.952,-50.842,109.892)
C8: (-5.909,-51.482,108.212)
C2: (-7.512,-50.393,104.300)
C6: (-5.241,-51.237,104.758)
C5: (-5.696,-51.290,106.108)
C4: (-6.987,-50.895,106.391)
P: (-5.895,-54.310,111.291)
C4': (-8.834,-51.872,110.411)
C2': (-9.533,-51.384,108.208)
O2': (-10.646,-50.576,108.496)
N1: (-6.235,-50.756,103.905)
N2: (-8.341,-49.934,103.348)
N3: (-7.945,-50.463,105.547)
N7: (-5.035,-51.672,107.265)
N9: (-7.104,-50.986,107.749)
O5': (-7.018,-53.455,110.561)
O3': (-10.694,-53.117,109.451)
Image (generated by PyMOL):