Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ4:0561:0560
Extra
PDB:
ATOM 1 O3' G A 560 -12.436 94.988 128.222 1.00 90.77 O
ATOM 2 P A A 561 -12.023 93.815 129.247 1.00 92.74 P
ATOM 3 OP1 A A 561 -13.000 93.860 130.366 1.00 93.38 O
ATOM 4 OP2 A A 561 -10.569 93.929 129.539 1.00 91.66 O
ATOM 5 O5' A A 561 -12.260 92.469 128.427 1.00 90.82 O
ATOM 6 C5' A A 561 -13.563 91.866 128.347 1.00 90.03 C
ATOM 7 C4' A A 561 -13.441 90.444 127.867 1.00 90.80 C
ATOM 8 O4' A A 561 -12.866 90.454 126.532 1.00 91.37 O
ATOM 9 C3' A A 561 -12.486 89.569 128.665 1.00 91.67 C
ATOM 10 O3' A A 561 -13.068 89.038 129.851 1.00 93.99 O
ATOM 11 C2' A A 561 -12.105 88.502 127.648 1.00 91.10 C
ATOM 12 O2' A A 561 -13.093 87.503 127.477 1.00 89.76 O
ATOM 13 C1' A A 561 -11.987 89.345 126.376 1.00 90.24 C
ATOM 14 N9 A A 561 -10.627 89.859 126.181 1.00 88.27 N
ATOM 15 C8 A A 561 -10.105 91.058 126.611 1.00 87.74 C
ATOM 16 N7 A A 561 -8.839 91.222 126.309 1.00 86.48 N
ATOM 17 C5 A A 561 -8.505 90.059 125.629 1.00 86.06 C
ATOM 18 C6 A A 561 -7.304 89.616 125.046 1.00 84.93 C
ATOM 19 N6 A A 561 -6.174 90.323 125.053 1.00 84.42 N
ATOM 20 N1 A A 561 -7.305 88.406 124.448 1.00 84.47 N
ATOM 21 C2 A A 561 -8.440 87.697 124.437 1.00 85.53 C
ATOM 22 N3 A A 561 -9.632 88.005 124.948 1.00 86.38 N
ATOM 23 C4 A A 561 -9.597 89.213 125.538 1.00 86.82 C
ATOM 24 P C A 562 -12.130 88.697 131.119 1.00 95.84 P
ATOM 25 OP1 C A 562 -13.034 88.281 132.220 1.00 96.41 O
ATOM 26 OP2 C A 562 -11.189 89.830 131.338 1.00 95.41 O
ATOM 27 O5' C A 562 -11.298 87.420 130.647 1.00 94.13 O
TER
ATOM 1 O3' C B 559 -8.926 99.650 125.797 1.00 82.91 O
ATOM 2 P G B 560 -8.695 98.667 127.049 1.00 85.45 P
ATOM 3 OP1 G B 560 -9.142 99.417 128.253 1.00 84.74 O
ATOM 4 OP2 G B 560 -7.306 98.135 126.991 1.00 84.71 O
ATOM 5 O5' G B 560 -9.720 97.469 126.799 1.00 85.78 O
ATOM 6 C5' G B 560 -11.141 97.687 126.929 1.00 86.85 C
ATOM 7 C4' G B 560 -11.924 96.519 126.371 1.00 86.98 C
ATOM 8 O4' G B 560 -11.552 96.305 124.985 1.00 85.79 O
ATOM 9 C3' G B 560 -11.702 95.158 127.012 1.00 88.12 C
ATOM 10 O3' G B 560 -12.436 94.988 128.222 1.00 90.77 O
ATOM 11 C2' G B 560 -12.200 94.217 125.924 1.00 86.96 C
ATOM 12 O2' G B 560 -13.608 94.105 125.882 1.00 86.31 O
ATOM 13 C1' G B 560 -11.691 94.928 124.668 1.00 86.04 C
ATOM 14 N9 G B 560 -10.392 94.404 124.258 1.00 84.64 N
ATOM 15 C8 G B 560 -9.157 94.976 124.452 1.00 84.14 C
ATOM 16 N7 G B 560 -8.178 94.242 123.995 1.00 83.97 N
ATOM 17 C5 G B 560 -8.805 93.124 123.461 1.00 83.43 C
ATOM 18 C6 G B 560 -8.260 91.974 122.827 1.00 83.64 C
ATOM 19 O6 G B 560 -7.075 91.704 122.608 1.00 83.88 O
ATOM 20 N1 G B 560 -9.255 91.085 122.436 1.00 83.25 N
ATOM 21 C2 G B 560 -10.600 91.270 122.631 1.00 83.68 C
ATOM 22 N2 G B 560 -11.402 90.295 122.183 1.00 83.47 N
ATOM 23 N3 G B 560 -11.121 92.332 123.224 1.00 83.52 N
ATOM 24 C4 G B 560 -10.171 93.212 123.610 1.00 83.62 C
ATOM 25 P A B 561 -12.023 93.815 129.247 1.00 92.74 P
ATOM 26 OP1 A B 561 -13.000 93.860 130.366 1.00 93.38 O
ATOM 27 OP2 A B 561 -10.569 93.929 129.539 1.00 91.66 O
ATOM 28 O5' A B 561 -12.260 92.469 128.427 1.00 90.82 O
TER
ATOM 2 P A A 561 -12.023 93.815 129.247 1.00 92.74 P
ATOM 3 OP1 A A 561 -13.000 93.860 130.366 1.00 93.38 O
ATOM 4 OP2 A A 561 -10.569 93.929 129.539 1.00 91.66 O
ATOM 5 O5' A A 561 -12.260 92.469 128.427 1.00 90.82 O
ATOM 6 C5' A A 561 -13.563 91.866 128.347 1.00 90.03 C
ATOM 7 C4' A A 561 -13.441 90.444 127.867 1.00 90.80 C
ATOM 8 O4' A A 561 -12.866 90.454 126.532 1.00 91.37 O
ATOM 9 C3' A A 561 -12.486 89.569 128.665 1.00 91.67 C
ATOM 10 O3' A A 561 -13.068 89.038 129.851 1.00 93.99 O
ATOM 11 C2' A A 561 -12.105 88.502 127.648 1.00 91.10 C
ATOM 12 O2' A A 561 -13.093 87.503 127.477 1.00 89.76 O
ATOM 13 C1' A A 561 -11.987 89.345 126.376 1.00 90.24 C
ATOM 14 N9 A A 561 -10.627 89.859 126.181 1.00 88.27 N
ATOM 15 C8 A A 561 -10.105 91.058 126.611 1.00 87.74 C
ATOM 16 N7 A A 561 -8.839 91.222 126.309 1.00 86.48 N
ATOM 17 C5 A A 561 -8.505 90.059 125.629 1.00 86.06 C
ATOM 18 C6 A A 561 -7.304 89.616 125.046 1.00 84.93 C
ATOM 19 N6 A A 561 -6.174 90.323 125.053 1.00 84.42 N
ATOM 20 N1 A A 561 -7.305 88.406 124.448 1.00 84.47 N
ATOM 21 C2 A A 561 -8.440 87.697 124.437 1.00 85.53 C
ATOM 22 N3 A A 561 -9.632 88.005 124.948 1.00 86.38 N
ATOM 23 C4 A A 561 -9.597 89.213 125.538 1.00 86.82 C
ATOM 24 P C A 562 -12.130 88.697 131.119 1.00 95.84 P
ATOM 25 OP1 C A 562 -13.034 88.281 132.220 1.00 96.41 O
ATOM 26 OP2 C A 562 -11.189 89.830 131.338 1.00 95.41 O
ATOM 27 O5' C A 562 -11.298 87.420 130.647 1.00 94.13 O
TER
ATOM 1 O3' C B 559 -8.926 99.650 125.797 1.00 82.91 O
ATOM 2 P G B 560 -8.695 98.667 127.049 1.00 85.45 P
ATOM 3 OP1 G B 560 -9.142 99.417 128.253 1.00 84.74 O
ATOM 4 OP2 G B 560 -7.306 98.135 126.991 1.00 84.71 O
ATOM 5 O5' G B 560 -9.720 97.469 126.799 1.00 85.78 O
ATOM 6 C5' G B 560 -11.141 97.687 126.929 1.00 86.85 C
ATOM 7 C4' G B 560 -11.924 96.519 126.371 1.00 86.98 C
ATOM 8 O4' G B 560 -11.552 96.305 124.985 1.00 85.79 O
ATOM 9 C3' G B 560 -11.702 95.158 127.012 1.00 88.12 C
ATOM 10 O3' G B 560 -12.436 94.988 128.222 1.00 90.77 O
ATOM 11 C2' G B 560 -12.200 94.217 125.924 1.00 86.96 C
ATOM 12 O2' G B 560 -13.608 94.105 125.882 1.00 86.31 O
ATOM 13 C1' G B 560 -11.691 94.928 124.668 1.00 86.04 C
ATOM 14 N9 G B 560 -10.392 94.404 124.258 1.00 84.64 N
ATOM 15 C8 G B 560 -9.157 94.976 124.452 1.00 84.14 C
ATOM 16 N7 G B 560 -8.178 94.242 123.995 1.00 83.97 N
ATOM 17 C5 G B 560 -8.805 93.124 123.461 1.00 83.43 C
ATOM 18 C6 G B 560 -8.260 91.974 122.827 1.00 83.64 C
ATOM 19 O6 G B 560 -7.075 91.704 122.608 1.00 83.88 O
ATOM 20 N1 G B 560 -9.255 91.085 122.436 1.00 83.25 N
ATOM 21 C2 G B 560 -10.600 91.270 122.631 1.00 83.68 C
ATOM 22 N2 G B 560 -11.402 90.295 122.183 1.00 83.47 N
ATOM 23 N3 G B 560 -11.121 92.332 123.224 1.00 83.52 N
ATOM 24 C4 G B 560 -10.171 93.212 123.610 1.00 83.62 C
ATOM 25 P A B 561 -12.023 93.815 129.247 1.00 92.74 P
ATOM 26 OP1 A B 561 -13.000 93.860 130.366 1.00 93.38 O
ATOM 27 OP2 A B 561 -10.569 93.929 129.539 1.00 91.66 O
ATOM 28 O5' A B 561 -12.260 92.469 128.427 1.00 90.82 O
TER
Atoms:
OP1: (-13.000,93.860,130.366)
OP2: (-10.569,93.929,129.539)
C3': (-12.486,89.569,128.665)
C1': (-11.987,89.345,126.376)
C5': (-13.563,91.866,128.347)
O4': (-12.866,90.454,126.532)
C8: (-10.105,91.058,126.611)
O2': (-13.093,87.503,127.477)
C6: (-7.304,89.616,125.046)
C5: (-8.505,90.059,125.629)
C4: (-9.597,89.213,125.538)
P: (-12.023,93.815,129.247)
C4': (-13.441,90.444,127.867)
C2': (-12.105,88.502,127.648)
C2: (-8.440,87.697,124.437)
N1: (-7.305,88.406,124.448)
N3: (-9.632,88.005,124.948)
N6: (-6.174,90.323,125.053)
N7: (-8.839,91.222,126.309)
N9: (-10.627,89.859,126.181)
O5': (-12.260,92.469,128.427)
O3': (-13.068,89.038,129.851)
OP2: (-10.569,93.929,129.539)
C3': (-12.486,89.569,128.665)
C1': (-11.987,89.345,126.376)
C5': (-13.563,91.866,128.347)
O4': (-12.866,90.454,126.532)
C8: (-10.105,91.058,126.611)
O2': (-13.093,87.503,127.477)
C6: (-7.304,89.616,125.046)
C5: (-8.505,90.059,125.629)
C4: (-9.597,89.213,125.538)
P: (-12.023,93.815,129.247)
C4': (-13.441,90.444,127.867)
C2': (-12.105,88.502,127.648)
C2: (-8.440,87.697,124.437)
N1: (-7.305,88.406,124.448)
N3: (-9.632,88.005,124.948)
N6: (-6.174,90.323,125.053)
N7: (-8.839,91.222,126.309)
N9: (-10.627,89.859,126.181)
O5': (-12.260,92.469,128.427)
O3': (-13.068,89.038,129.851)
OP1: (-9.142,99.417,128.253)
OP2: (-7.306,98.135,126.991)
C3': (-11.702,95.158,127.012)
C1': (-11.691,94.928,124.668)
C5': (-11.141,97.687,126.929)
O6: (-7.075,91.704,122.608)
O4': (-11.552,96.305,124.985)
C8: (-9.157,94.976,124.452)
C2: (-10.600,91.270,122.631)
C6: (-8.260,91.974,122.827)
C5: (-8.805,93.124,123.461)
C4: (-10.171,93.212,123.610)
P: (-8.695,98.667,127.049)
C4': (-11.924,96.519,126.371)
C2': (-12.200,94.217,125.924)
O2': (-13.608,94.105,125.882)
N1: (-9.255,91.085,122.436)
N2: (-11.402,90.295,122.183)
N3: (-11.121,92.332,123.224)
N7: (-8.178,94.242,123.995)
N9: (-10.392,94.404,124.258)
O5': (-9.720,97.469,126.799)
O3': (-12.436,94.988,128.222)
OP2: (-7.306,98.135,126.991)
C3': (-11.702,95.158,127.012)
C1': (-11.691,94.928,124.668)
C5': (-11.141,97.687,126.929)
O6: (-7.075,91.704,122.608)
O4': (-11.552,96.305,124.985)
C8: (-9.157,94.976,124.452)
C2: (-10.600,91.270,122.631)
C6: (-8.260,91.974,122.827)
C5: (-8.805,93.124,123.461)
C4: (-10.171,93.212,123.610)
P: (-8.695,98.667,127.049)
C4': (-11.924,96.519,126.371)
C2': (-12.200,94.217,125.924)
O2': (-13.608,94.105,125.882)
N1: (-9.255,91.085,122.436)
N2: (-11.402,90.295,122.183)
N3: (-11.121,92.332,123.224)
N7: (-8.178,94.242,123.995)
N9: (-10.392,94.404,124.258)
O5': (-9.720,97.469,126.799)
O3': (-12.436,94.988,128.222)
Image (generated by PyMOL):